CX295610

Overview
NameCX295610
Unique NameCX295610
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length493
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_BURP1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia pseudomallei (strain 1710b) GN=dxs PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.124e-16
Identity = 41/65 (63.08%), Postives = 52/65 (80.00%), Query Frame = 3
Query:  297 LLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            LL TI+ P  ++ L +  L+ LA ELRA +++SVSKTGGHLS+NLG VELT+ALH VFNTPDD+I
Sbjct:    4 LLKTIDDPADLRRLDRRQLQPLADELRAFVLDSVSKTGGHLSSNLGTVELTIALHYVFNTPDDRI 68          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_BURP0 (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia pseudomallei (strain 1106a) GN=dxs PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.124e-16
Identity = 41/65 (63.08%), Postives = 52/65 (80.00%), Query Frame = 3
Query:  297 LLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            LL TI+ P  ++ L +  L+ LA ELRA +++SVSKTGGHLS+NLG VELT+ALH VFNTPDD+I
Sbjct:    4 LLKTIDDPADLRRLDRRQLQPLADELRAFVLDSVSKTGGHLSSNLGTVELTIALHYVFNTPDDRI 68          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_BURMA (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia mallei GN=dxs PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.124e-16
Identity = 41/65 (63.08%), Postives = 52/65 (80.00%), Query Frame = 3
Query:  297 LLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            LL TI+ P  ++ L +  L+ LA ELRA +++SVSKTGGHLS+NLG VELT+ALH VFNTPDD+I
Sbjct:    4 LLKTIDDPADLRRLDRRQLQPLADELRAFVLDSVSKTGGHLSSNLGTVELTIALHYVFNTPDDRI 68          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_AZOSB (1-deoxy-D-xylulose-5-phosphate synthase OS=Azoarcus sp. (strain BH72) GN=dxs PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.124e-16
Identity = 40/68 (58.82%), Postives = 52/68 (76.47%), Query Frame = 3
Query:  288 PTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            P P L+ I  P  ++   + +L Q+A+ELRA ++ SVSKTGGHLS+NLG VELT+ALH VFNTPDD+I
Sbjct:    3 PYPHLERIGSPADLRATERRELAQVASELRAFLIESVSKTGGHLSSNLGTVELTIALHYVFNTPDDRI 70          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_XANP2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=dxs PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.080e-16
Identity = 41/67 (61.19%), Postives = 52/67 (77.61%), Query Frame = 3
Query:  291 TPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            TPLLDTI     ++ L ++ L QLAAELRA+ +++VS TGGHL A LGVVELT+ALH VFNTP D++
Sbjct:    6 TPLLDTIRDAADVRRLPQDKLAQLAAELRAETIDAVSVTGGHLGAGLGVVELTVALHHVFNTPHDRL 72          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_RHOCS (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=dxs PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.080e-16
Identity = 40/67 (59.70%), Postives = 49/67 (73.13%), Query Frame = 3
Query:  291 TPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            TPLLDT+N P  ++ L    L Q A ELR + +N+VS TGGHL A LGVVELT+ALH VFNTP D++
Sbjct:    7 TPLLDTVNTPEDLRKLDPSQLRQFADELRTETINAVSVTGGHLGAGLGVVELTVALHYVFNTPADRL 73          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_PSEPK (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas putida (strain KT2440) GN=dxs PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 4.080e-16
Identity = 38/75 (50.67%), Postives = 55/75 (73.33%), Query Frame = 3
Query:  267 DFSEEKPPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            +   E+P TPLLD  + P  ++ L++ DLE LA ELR +++ +V +TGGH  A LGV+ELT+ALH VF+TPDD++
Sbjct:    7 EIPRERPVTPLLDRADTPAGLRRLAEADLETLADELRQELLYTVGQTGGHFGAGLGVIELTIALHYVFDTPDDRL 81          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_PSEPG (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas putida (strain GB-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.080e-16
Identity = 38/75 (50.67%), Postives = 55/75 (73.33%), Query Frame = 3
Query:  267 DFSEEKPPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            +   E+P TPLLD  + P  ++ L++ DLE LA ELR +++ +V +TGGH  A LGV+ELT+ALH VF+TPDD++
Sbjct:    7 EIPRERPVTPLLDRADTPAGLRRLAEADLETLADELRQELLYTVGQTGGHFGAGLGVIELTIALHYVFDTPDDRL 81          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_PSEP1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=dxs PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.080e-16
Identity = 38/75 (50.67%), Postives = 55/75 (73.33%), Query Frame = 3
Query:  267 DFSEEKPPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            +   E+P TPLLD  + P  ++ L++ DLE LA ELR +++ +V +TGGH  A LGV+ELT+ALH VF+TPDD++
Sbjct:    7 EIPRERPVTPLLDRADTPAGLRRLAEADLETLADELRQELLYTVGQTGGHFGAGLGVIELTIALHYVFDTPDDRL 81          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_PSEMY (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas mendocina (strain ymp) GN=dxs PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.080e-16
Identity = 39/75 (52.00%), Postives = 55/75 (73.33%), Query Frame = 3
Query:  267 DFSEEKPPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            +   E+P TPLLD+ N P  ++ L++ DLE LA ELR  ++ SV ++GGH  A LGV+ELT+ALH VF+TPDD++
Sbjct:    7 EIPRERPLTPLLDSANTPDELRRLAEADLETLADELRQYLLYSVGQSGGHFGAGLGVIELTIALHYVFDTPDDRL 81          
The following BLAST results are available for this feature:
BLAST of CX295610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 303
Match NameE-valueIdentityDescription
DXS_BURP13.124e-1663.081-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_BURP03.124e-1663.081-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_BURMA3.124e-1663.081-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_AZOSB3.124e-1658.821-deoxy-D-xylulose-5-phosphate synthase OS=Azoarcu... [more]
DXS_XANP24.080e-1661.191-deoxy-D-xylulose-5-phosphate synthase OS=Xanthob... [more]
DXS_RHOCS4.080e-1659.701-deoxy-D-xylulose-5-phosphate synthase OS=Rhodosp... [more]
DXS_PSEPK4.080e-1650.671-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_PSEPG4.080e-1650.671-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_PSEP14.080e-1650.671-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_PSEMY4.080e-1652.001-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]

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Properties
Property NameValue
Genbank descriptionC05074A07SK DroRLeaf1 Citrus clementina cDNA clone C05074A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295610 ID=CX295610; Name=CX295610; organism=Citrus clementina; type=EST; length=493bp
CTTCCCTCTCTGTCTCTTTCACTTCCTCCTTCGTTATTCATCTCGCGCTC
ACTACTGAATATTGGATCGCACCAACTATGGCTCTCTCTTCCGGGATTGC
TATTGGAGCTAAACAATCTATTTCTCCATTTTTCACTGTTTCACAACCAA
GCCTTAGTTACAGAAAACAGAATTTCTGTTTGAGAGCGTCCGCTGAGAAG
AATAGCTCAGATGGCGAGGAAGCGACGAAGATGGTGATGAGGAAACAAAA
AGGCGGCTGGAAAATTGATTTTTCTGAAGAGAAGCCACCAACACCATTGT
TGGACACGATTAATTACCCAATTCATATGAAGAATCTCTCTAAAGAGGAT
CTTGAACAACTGGCAGCAGAGCTTAGAGCAGATATTGTTAACAGTGTATC
GAAGACAGGTGGGCATCTTAGTGCAAACTTAGGAGTGGTGGAGCTAACAC
TTGCTTTGCATCGTGTTTTCAACACACCTGACGATAAAATTAT
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