CX295610

Overview
NameCX295610
Unique NameCX295610
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length493
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_HYPNA (1-deoxy-D-xylulose-5-phosphate synthase OS=Hyphomonas neptunium (strain ATCC 15444) GN=dxs PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.080e-16
Identity = 40/71 (56.34%), Postives = 54/71 (76.06%), Query Frame = 3
Query:  279 EKPPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            E  P  LLD I+ P  +K  S+ DL+Q+AAE+R ++V+ VS TGGHL + LGVVELT+A+H VF+TPDDK+
Sbjct:    3 ETRPNRLLDAIDTPSDLKGRSRADLKQIAAEVREEVVDVVSVTGGHLGSGLGVVELTVAIHSVFDTPDDKL 73          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_OCHA4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=dxs PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.329e-16
Identity = 41/70 (58.57%), Postives = 52/70 (74.29%), Query Frame = 3
Query:  282 KPPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            +P TPLLD    P  ++ L + DL QLA ELRA++++ VS TGGHL A LGVVELT+ALH VF+TP D+I
Sbjct:    3 RPTTPLLDKAPIPEALRALPESDLPQLAQELRAELIDVVSTTGGHLGAGLGVVELTVALHHVFDTPHDRI 72          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_PSEAE (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas aeruginosa GN=dxs PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.960e-16
Identity = 39/75 (52.00%), Postives = 53/75 (70.67%), Query Frame = 3
Query:  267 DFSEEKPPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            +   E+P TPLLD  + P  ++ L + DLE LA ELR  ++ +V +TGGH  A LGVVELT+ALH VF+TPDD++
Sbjct:    7 EIPRERPATPLLDRASSPAELRRLGEADLETLADELRQYLLYTVGQTGGHFGAGLGVVELTIALHYVFDTPDDRL 81          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_PSEAB (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=dxs PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.960e-16
Identity = 39/75 (52.00%), Postives = 53/75 (70.67%), Query Frame = 3
Query:  267 DFSEEKPPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            +   E+P TPLLD  + P  ++ L + DLE LA ELR  ++ +V +TGGH  A LGVVELT+ALH VF+TPDD++
Sbjct:    7 EIPRERPATPLLDRASSPAELRRLGEADLETLADELRQYLLYTVGQTGGHFGAGLGVVELTIALHYVFDTPDDRL 81          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_PSEA8 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas aeruginosa (strain LESB58) GN=dxs PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.960e-16
Identity = 39/75 (52.00%), Postives = 53/75 (70.67%), Query Frame = 3
Query:  267 DFSEEKPPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            +   E+P TPLLD  + P  ++ L + DLE LA ELR  ++ +V +TGGH  A LGVVELT+ALH VF+TPDD++
Sbjct:    7 EIPRERPATPLLDRASSPAELRRLGEADLETLADELRQYLLYTVGQTGGHFGAGLGVVELTIALHYVFDTPDDRL 81          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_PSEA7 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas aeruginosa (strain PA7) GN=dxs PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.960e-16
Identity = 39/75 (52.00%), Postives = 53/75 (70.67%), Query Frame = 3
Query:  267 DFSEEKPPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            +   E+P TPLLD  + P  ++ L + DLE LA ELR  ++ +V +TGGH  A LGVVELT+ALH VF+TPDD++
Sbjct:    7 EIPRERPATPLLDRASSPAELRRLGEADLETLADELRQYLLYTVGQTGGHFGAGLGVVELTIALHYVFDTPDDRL 81          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_CLOD6 (1-deoxy-D-xylulose-5-phosphate synthase OS=Clostridium difficile (strain 630) GN=dxs PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.960e-16
Identity = 39/64 (60.94%), Postives = 54/64 (84.38%), Query Frame = 3
Query:  300 LDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            LD +N P ++KN+S E+++ LA ++R  +V SVSKTGGHL++NLGVVELTLALH+VF++P DKI
Sbjct:    5 LDKVNSPKNIKNMSIEEMDLLAKDIRKFLVKSVSKTGGHLASNLGVVELTLALHKVFDSPKDKI 68          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_SACD2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=dxs PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 9.090e-16
Identity = 38/71 (53.52%), Postives = 53/71 (74.65%), Query Frame = 3
Query:  279 EKPPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            ++P TPLLD ++ P  ++ LS++ L QLA ELR  ++ +V +TGGH  A LGVVELT+ALH V NTPDD++
Sbjct:    8 QRPNTPLLDVVDTPARLRELSEKQLPQLAKELREYLLYTVGQTGGHFGAGLGVVELTVALHYVLNTPDDRL 78          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_BEII9 (1-deoxy-D-xylulose-5-phosphate synthase OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=dxs PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 9.090e-16
Identity = 40/67 (59.70%), Postives = 51/67 (76.12%), Query Frame = 3
Query:  291 TPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            TPLLDTI  P  ++ L + DL QLA ELR + +++VS TGGHL A LGVVELT+ALH VF+TP D++
Sbjct:    7 TPLLDTIATPTDLRRLKESDLAQLADELRTETIDAVSVTGGHLGAGLGVVELTVALHYVFDTPHDRL 73          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_PSEU2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=dxs PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.187e-15
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = 3
Query:  267 DFSEEKPPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            +   E+P TPLLD  + P  ++ L + +LE LA ELR +++ SV +TGGH  A LGV+ELT+ALH VF+TPDD++
Sbjct:    7 EIPRERPVTPLLDRADTPHGLRRLGEAELETLADELRLELLYSVGQTGGHFGAGLGVIELTIALHYVFDTPDDRL 81          
The following BLAST results are available for this feature:
BLAST of CX295610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 303
Match NameE-valueIdentityDescription
DXS_HYPNA4.080e-1656.341-deoxy-D-xylulose-5-phosphate synthase OS=Hyphomo... [more]
DXS_OCHA45.329e-1658.571-deoxy-D-xylulose-5-phosphate synthase OS=Ochroba... [more]
DXS_PSEAE6.960e-1652.001-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_PSEAB6.960e-1652.001-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_PSEA86.960e-1652.001-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_PSEA76.960e-1652.001-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_CLOD66.960e-1660.941-deoxy-D-xylulose-5-phosphate synthase OS=Clostri... [more]
DXS_SACD29.090e-1653.521-deoxy-D-xylulose-5-phosphate synthase OS=Sacchar... [more]
DXS_BEII99.090e-1659.701-deoxy-D-xylulose-5-phosphate synthase OS=Beijeri... [more]
DXS_PSEU21.187e-1550.671-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]

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Properties
Property NameValue
Genbank descriptionC05074A07SK DroRLeaf1 Citrus clementina cDNA clone C05074A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295610 ID=CX295610; Name=CX295610; organism=Citrus clementina; type=EST; length=493bp
CTTCCCTCTCTGTCTCTTTCACTTCCTCCTTCGTTATTCATCTCGCGCTC
ACTACTGAATATTGGATCGCACCAACTATGGCTCTCTCTTCCGGGATTGC
TATTGGAGCTAAACAATCTATTTCTCCATTTTTCACTGTTTCACAACCAA
GCCTTAGTTACAGAAAACAGAATTTCTGTTTGAGAGCGTCCGCTGAGAAG
AATAGCTCAGATGGCGAGGAAGCGACGAAGATGGTGATGAGGAAACAAAA
AGGCGGCTGGAAAATTGATTTTTCTGAAGAGAAGCCACCAACACCATTGT
TGGACACGATTAATTACCCAATTCATATGAAGAATCTCTCTAAAGAGGAT
CTTGAACAACTGGCAGCAGAGCTTAGAGCAGATATTGTTAACAGTGTATC
GAAGACAGGTGGGCATCTTAGTGCAAACTTAGGAGTGGTGGAGCTAACAC
TTGCTTTGCATCGTGTTTTCAACACACCTGACGATAAAATTAT
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