CX295610

Overview
NameCX295610
Unique NameCX295610
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length493
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_PSESM (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas syringae pv. tomato GN=dxs PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.187e-15
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = 3
Query:  267 DFSEEKPPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            +   E+P TPLLD  + P  ++ L + +LE LA ELR +++ SV +TGGH  A LGV+ELT+ALH VF+TPDD++
Sbjct:    7 EIPRERPVTPLLDQADTPHGLRRLGEAELETLADELRLELLYSVGQTGGHFGAGLGVIELTIALHYVFDTPDDRL 81          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_PSE14 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=dxs PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.187e-15
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = 3
Query:  267 DFSEEKPPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            +   E+P TPLLD  + P  ++ L + +LE LA ELR +++ SV +TGGH  A LGV+ELT+ALH VF+TPDD++
Sbjct:    7 EIPRERPVTPLLDRADTPHGLRRLGEAELETLADELRLELLYSVGQTGGHFGAGLGVIELTIALHYVFDTPDDRL 81          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_NITEC (1-deoxy-D-xylulose-5-phosphate synthase OS=Nitrosomonas eutropha (strain C91) GN=dxs PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.187e-15
Identity = 37/66 (56.06%), Postives = 51/66 (77.27%), Query Frame = 3
Query:  294 PLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            PLLD I  P  ++NL +  L QLA ELR+ ++ SV+KTGGHLS+NLG +ELT+ALH +F+TP D++
Sbjct:    3 PLLDRIEIPAQLRNLKRSQLPQLADELRSFLIESVAKTGGHLSSNLGTIELTIALHYIFDTPFDRL 68          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_DEHSC (1-deoxy-D-xylulose-5-phosphate synthase OS=Dehalococcoides sp. (strain CBDB1) GN=dxs PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.187e-15
Identity = 40/79 (50.63%), Postives = 56/79 (70.89%), Query Frame = 3
Query:  255 GWKIDFSEEKPPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            G +I        + LLDTIN P  +K LS ++L +LA ++R ++VN V+  GGHL+++LGVVELT+ALHRVF +P DKI
Sbjct:    4 GLEISILHNLEMSKLLDTINSPSDLKKLSLDELRELAVQIREELVNRVTLNGGHLASSLGVVELTIALHRVFESPKDKI 82          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_CAUCR (1-deoxy-D-xylulose-5-phosphate synthase OS=Caulobacter crescentus GN=dxs PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.187e-15
Identity = 41/65 (63.08%), Postives = 50/65 (76.92%), Query Frame = 3
Query:  291 TPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDD 485
            TPLLDTI  P   + LS  +L+QLAAE+RA+ +++VS TGGHL A LGVVELT+ALH VF TP D
Sbjct:    5 TPLLDTIASPADTRGLSLAELKQLAAEVRAETIDAVSVTGGHLGAGLGVVELTVALHHVFETPKD 69          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_CAUCN (1-deoxy-D-xylulose-5-phosphate synthase OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=dxs PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.187e-15
Identity = 41/65 (63.08%), Postives = 50/65 (76.92%), Query Frame = 3
Query:  291 TPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDD 485
            TPLLDTI  P   + LS  +L+QLAAE+RA+ +++VS TGGHL A LGVVELT+ALH VF TP D
Sbjct:    5 TPLLDTIASPADTRGLSLAELKQLAAEVRAETIDAVSVTGGHLGAGLGVVELTVALHHVFETPKD 69          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_BURS3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia sp. (strain 383) GN=dxs PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.187e-15
Identity = 40/65 (61.54%), Postives = 52/65 (80.00%), Query Frame = 3
Query:  297 LLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            LL TI+ P  ++ L +  L+ LA ELRA +++SVSKTGGHLS+NLG VELT+ALH VFNTP+D+I
Sbjct:    4 LLKTIDDPADLRRLDRRQLQPLADELRAFVLDSVSKTGGHLSSNLGTVELTIALHYVFNTPNDRI 68          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_BURCM (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=dxs PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.187e-15
Identity = 40/65 (61.54%), Postives = 52/65 (80.00%), Query Frame = 3
Query:  297 LLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            LL TI+ P  ++ L +  L+ LA ELRA +++SVSKTGGHLS+NLG VELT+ALH VFNTP+D+I
Sbjct:   16 LLKTIDDPADLRRLDRRQLQPLADELRAFVLDSVSKTGGHLSSNLGTVELTIALHYVFNTPNDRI 80          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_BURCJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=dxs PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.187e-15
Identity = 40/65 (61.54%), Postives = 52/65 (80.00%), Query Frame = 3
Query:  297 LLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            LL TI+ P  ++ L +  L+ LA ELRA +++SVSKTGGHLS+NLG VELT+ALH VFNTP+D+I
Sbjct:    4 LLKTIDDPADLRRLDRRQLQPLADELRAFVLDSVSKTGGHLSSNLGTVELTIALHYVFNTPNDRI 68          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_BURCH (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia cenocepacia (strain HI2424) GN=dxs PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.187e-15
Identity = 40/65 (61.54%), Postives = 52/65 (80.00%), Query Frame = 3
Query:  297 LLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            LL TI+ P  ++ L +  L+ LA ELRA +++SVSKTGGHLS+NLG VELT+ALH VFNTP+D+I
Sbjct:   16 LLKTIDDPADLRRLDRRQLQPLADELRAFVLDSVSKTGGHLSSNLGTVELTIALHYVFNTPNDRI 80          
The following BLAST results are available for this feature:
BLAST of CX295610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 303
Match NameE-valueIdentityDescription
DXS_PSESM1.187e-1550.671-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_PSE141.187e-1550.671-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_NITEC1.187e-1556.061-deoxy-D-xylulose-5-phosphate synthase OS=Nitroso... [more]
DXS_DEHSC1.187e-1550.631-deoxy-D-xylulose-5-phosphate synthase OS=Dehaloc... [more]
DXS_CAUCR1.187e-1563.081-deoxy-D-xylulose-5-phosphate synthase OS=Cauloba... [more]
DXS_CAUCN1.187e-1563.081-deoxy-D-xylulose-5-phosphate synthase OS=Cauloba... [more]
DXS_BURS31.187e-1561.541-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_BURCM1.187e-1561.541-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_BURCJ1.187e-1561.541-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_BURCH1.187e-1561.541-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]

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Properties
Property NameValue
Genbank descriptionC05074A07SK DroRLeaf1 Citrus clementina cDNA clone C05074A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295610 ID=CX295610; Name=CX295610; organism=Citrus clementina; type=EST; length=493bp
CTTCCCTCTCTGTCTCTTTCACTTCCTCCTTCGTTATTCATCTCGCGCTC
ACTACTGAATATTGGATCGCACCAACTATGGCTCTCTCTTCCGGGATTGC
TATTGGAGCTAAACAATCTATTTCTCCATTTTTCACTGTTTCACAACCAA
GCCTTAGTTACAGAAAACAGAATTTCTGTTTGAGAGCGTCCGCTGAGAAG
AATAGCTCAGATGGCGAGGAAGCGACGAAGATGGTGATGAGGAAACAAAA
AGGCGGCTGGAAAATTGATTTTTCTGAAGAGAAGCCACCAACACCATTGT
TGGACACGATTAATTACCCAATTCATATGAAGAATCTCTCTAAAGAGGAT
CTTGAACAACTGGCAGCAGAGCTTAGAGCAGATATTGTTAACAGTGTATC
GAAGACAGGTGGGCATCTTAGTGCAAACTTAGGAGTGGTGGAGCTAACAC
TTGCTTTGCATCGTGTTTTCAACACACCTGACGATAAAATTAT
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