CX295610

Overview
NameCX295610
Unique NameCX295610
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length493
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_BURCC (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia cenocepacia (strain MC0-3) GN=dxs PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.187e-15
Identity = 40/65 (61.54%), Postives = 52/65 (80.00%), Query Frame = 3
Query:  297 LLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            LL TI+ P  ++ L +  L+ LA ELRA +++SVSKTGGHLS+NLG VELT+ALH VFNTP+D+I
Sbjct:    4 LLKTIDDPADLRRLDRRQLQPLADELRAFVLDSVSKTGGHLSSNLGTVELTIALHYVFNTPNDRI 68          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_BURCA (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia cenocepacia (strain AU 1054) GN=dxs PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.187e-15
Identity = 40/65 (61.54%), Postives = 52/65 (80.00%), Query Frame = 3
Query:  297 LLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            LL TI+ P  ++ L +  L+ LA ELRA +++SVSKTGGHLS+NLG VELT+ALH VFNTP+D+I
Sbjct:    4 LLKTIDDPADLRRLDRRQLQPLADELRAFVLDSVSKTGGHLSSNLGTVELTIALHYVFNTPNDRI 68          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_BURA4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia ambifaria (strain MC40-6) GN=dxs PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.187e-15
Identity = 40/65 (61.54%), Postives = 52/65 (80.00%), Query Frame = 3
Query:  297 LLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            LL TI+ P  ++ L +  L+ LA ELRA +++SVSKTGGHLS+NLG VELT+ALH VFNTP+D+I
Sbjct:    4 LLKTIDDPADLRRLDRRQLQPLADELRAFVLDSVSKTGGHLSSNLGTVELTIALHYVFNTPNDRI 68          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_AZOC5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=dxs PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.187e-15
Identity = 40/67 (59.70%), Postives = 51/67 (76.12%), Query Frame = 3
Query:  291 TPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            TPLLDT+     ++ L +E L QLA ELRA+ +++VS TGGHL A LGVVELT+ALH VFNTP D++
Sbjct:    6 TPLLDTVRDASDVRRLPEEKLSQLADELRAETISAVSVTGGHLGAGLGVVELTVALHHVFNTPHDRL 72          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS2_RHOS4 (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=dxs2 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.187e-15
Identity = 38/71 (53.52%), Postives = 52/71 (73.24%), Query Frame = 3
Query:  279 EKPPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            ++P TP LD +  P+ +K L+  +L  LA ELRA+ +++VS TGGHL A LGVVELT+ALH +F+ P DKI
Sbjct:    3 DRPCTPTLDRVTLPVDIKGLTDRELRSLADELRAETISAVSVTGGHLGAGLGVVELTVALHAIFDAPRDKI 73          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_PSEPF (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas fluorescens (strain Pf0-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.551e-15
Identity = 37/75 (49.33%), Postives = 54/75 (72.00%), Query Frame = 3
Query:  267 DFSEEKPPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            +   ++P TPLLD  N P  ++ L + +LE LA ELR +++ +V +TGGH  A LGV+ELT+ALH VF+TPDD++
Sbjct:    7 EIPRKRPTTPLLDRANTPDGLRRLGEAELETLADELRLELLYTVGQTGGHFGAGLGVIELTIALHYVFDTPDDRL 81          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_CELJU (1-deoxy-D-xylulose-5-phosphate synthase OS=Cellvibrio japonicus (strain Ueda107) GN=dxs PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.551e-15
Identity = 38/70 (54.29%), Postives = 55/70 (78.57%), Query Frame = 3
Query:  282 KPPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            +P TPLLD+I+ P  ++ LS++ L QLA ELRA ++ +V +TGGH  A LGVVELT+ALH V++TP+D++
Sbjct:    9 RPATPLLDSIDSPAELRALSEKQLPQLADELRAFLLYTVGQTGGHFGAGLGVVELTIALHYVYDTPEDRL 78          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_BORPD (1-deoxy-D-xylulose-5-phosphate synthase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=dxs PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.551e-15
Identity = 40/67 (59.70%), Postives = 52/67 (77.61%), Query Frame = 3
Query:  291 TPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            T LLD I+ P  ++ L + +L+ LA ELR  ++ SVS+TGGHLS+NLG VELTLALHRVF+TP D+I
Sbjct:    3 TELLDRIHSPDDVRQLDRRELKALAEELRGFVLESVSRTGGHLSSNLGTVELTLALHRVFDTPHDRI 69          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_VEREI (1-deoxy-D-xylulose-5-phosphate synthase OS=Verminephrobacter eiseniae (strain EF01-2) GN=dxs PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.025e-15
Identity = 38/66 (57.58%), Postives = 52/66 (78.79%), Query Frame = 3
Query:  294 PLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            PLL+TI+ P  ++ L++  L+ LAAELR  ++ SVS+TGGHLS+NLG VELT+ALH VF TP D++
Sbjct:    7 PLLETIDDPAQLRQLARAQLKVLAAELRGFVLESVSRTGGHLSSNLGTVELTVALHHVFQTPHDRL 72          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_DIAST (1-deoxy-D-xylulose-5-phosphate synthase OS=Diaphorobacter sp. (strain TPSY) GN=dxs PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.025e-15
Identity = 38/66 (57.58%), Postives = 52/66 (78.79%), Query Frame = 3
Query:  294 PLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            PLL+ +N P  ++ L + +L+ LA ELRA ++ SVSKTGGHLS+NLG VELT+ALH VF+TP D++
Sbjct:    7 PLLERVNDPADLRRLPRAELKALATELRAFVLESVSKTGGHLSSNLGTVELTVALHAVFDTPRDRL 72          
The following BLAST results are available for this feature:
BLAST of CX295610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 303
Match NameE-valueIdentityDescription
DXS_BURCC1.187e-1561.541-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_BURCA1.187e-1561.541-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_BURA41.187e-1561.541-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_AZOC51.187e-1559.701-deoxy-D-xylulose-5-phosphate synthase OS=Azorhiz... [more]
DXS2_RHOS41.187e-1553.521-deoxy-D-xylulose-5-phosphate synthase 2 OS=Rhodo... [more]
DXS_PSEPF1.551e-1549.331-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_CELJU1.551e-1554.291-deoxy-D-xylulose-5-phosphate synthase OS=Cellvib... [more]
DXS_BORPD1.551e-1559.701-deoxy-D-xylulose-5-phosphate synthase OS=Bordete... [more]
DXS_VEREI2.025e-1557.581-deoxy-D-xylulose-5-phosphate synthase OS=Vermine... [more]
DXS_DIAST2.025e-1557.581-deoxy-D-xylulose-5-phosphate synthase OS=Diaphor... [more]

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Properties
Property NameValue
Genbank descriptionC05074A07SK DroRLeaf1 Citrus clementina cDNA clone C05074A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295610 ID=CX295610; Name=CX295610; organism=Citrus clementina; type=EST; length=493bp
CTTCCCTCTCTGTCTCTTTCACTTCCTCCTTCGTTATTCATCTCGCGCTC
ACTACTGAATATTGGATCGCACCAACTATGGCTCTCTCTTCCGGGATTGC
TATTGGAGCTAAACAATCTATTTCTCCATTTTTCACTGTTTCACAACCAA
GCCTTAGTTACAGAAAACAGAATTTCTGTTTGAGAGCGTCCGCTGAGAAG
AATAGCTCAGATGGCGAGGAAGCGACGAAGATGGTGATGAGGAAACAAAA
AGGCGGCTGGAAAATTGATTTTTCTGAAGAGAAGCCACCAACACCATTGT
TGGACACGATTAATTACCCAATTCATATGAAGAATCTCTCTAAAGAGGAT
CTTGAACAACTGGCAGCAGAGCTTAGAGCAGATATTGTTAACAGTGTATC
GAAGACAGGTGGGCATCTTAGTGCAAACTTAGGAGTGGTGGAGCTAACAC
TTGCTTTGCATCGTGTTTTCAACACACCTGACGATAAAATTAT
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