CX295615

Overview
NameCX295615
Unique NameCX295615
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295615 vs. ExPASy Swiss-Prot
Match: UCRI_GORGO (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Gorilla gorilla gorilla GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.406e-30
Identity = 59/123 (47.97%), Postives = 86/123 (69.92%), Query Frame = 1
Query:  304 SKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVKNPEWLVVVGVCTHLGCIPLPNAGDF 672
            +++ F+Y +        A   +  + +FV SMSAS DVLALA +E+ LS I  G  +  KWRGKP+F+R RT+++I+   +V+++ LRDPQ D  RVK PEW++++GVCTHLGC+P+ NAGDF
Sbjct:  109 ARKGFSYLVTGVTTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDF 231          
BLAST of CX295615 vs. ExPASy Swiss-Prot
Match: UCRI_BOVIN (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Bos taurus GN=UQCRFS1 PE=1 SV=3)

HSP 1 Score: 131.339 bits (329), Expect = 4.406e-30
Identity = 58/123 (47.15%), Postives = 86/123 (69.92%), Query Frame = 1
Query:  304 SKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVKNPEWLVVVGVCTHLGCIPLPNAGDF 672
            +++ F+Y +        A   + ++ +FV SMSAS DVLA++ +E+ LS I  G  +  KWRGKP+F+R RT+++I    +V+V+ LRDPQ D  RVK PEW++++GVCTHLGC+P+ NAGDF
Sbjct:  109 ARKGFSYLVTATTTVGVAYAAKNVVSQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANAGDF 231          
BLAST of CX295615 vs. ExPASy Swiss-Prot
Match: UCRI_MOUSE (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Mus musculus GN=Uqcrfs1 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.754e-30
Identity = 58/123 (47.15%), Postives = 86/123 (69.92%), Query Frame = 1
Query:  304 SKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVKNPEWLVVVGVCTHLGCIPLPNAGDF 672
            +++ F+Y +        A   + ++ +FV SMSAS DVLA++ +E+ LS I  G  +  KWRGKP+F+R RT+++I    +V+V+ LRDPQ D  RVK PEW++++GVCTHLGC+P+ NAGDF
Sbjct:  109 ARKGFSYLVTATTTVGVAYAAKNVVSQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDF 231          
BLAST of CX295615 vs. ExPASy Swiss-Prot
Match: UCRI_AOTAZ (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Aotus azarai GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.754e-30
Identity = 56/123 (45.53%), Postives = 86/123 (69.92%), Query Frame = 1
Query:  304 SKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVKNPEWLVVVGVCTHLGCIPLPNAGDF 672
            +++ F+Y +            + ++ +FV SMSAS DVLA++ +E+ LS I  G  +  KWRGKP+F+R RT+++I+   +V+++ LRDPQ D  RVK PEW++++GVCTHLGC+P+ NAGDF
Sbjct:  109 ARKGFSYLVTATTAVGVTYAAKSIVTQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWMILIGVCTHLGCVPIANAGDF 231          
BLAST of CX295615 vs. ExPASy Swiss-Prot
Match: UCRIL_HUMAN (Cytochrome b-c1 complex subunit Rieske-like protein 1 OS=Homo sapiens GN=UQCRFSL1 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.754e-30
Identity = 59/123 (47.97%), Postives = 86/123 (69.92%), Query Frame = 1
Query:  304 SKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVKNPEWLVVVGVCTHLGCIPLPNAGDF 672
            +++ F+Y +        A   +  + +FV SMSAS DVLALA +E+ LS I  G  +  KWRGKP+F+R RT+++I+   +V+++ LRDPQ D  RVK PEW++++GVCTHLGC+P+ NAGDF
Sbjct:  118 ARKGFSYLVTGVTTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIKQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDF 240          
BLAST of CX295615 vs. ExPASy Swiss-Prot
Match: UCRI_SAISC (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Saimiri sciureus GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.515e-30
Identity = 55/123 (44.72%), Postives = 86/123 (69.92%), Query Frame = 1
Query:  304 SKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVKNPEWLVVVGVCTHLGCIPLPNAGDF 672
            +++ F+Y +            + ++ +F+ SMSAS DVLA++ +E+ LS I  G  +  KWRGKP+F+R RT+++I+   +V+++ LRDPQ D  RVK PEW++++GVCTHLGC+P+ NAGDF
Sbjct:  109 ARKVFSYMVTATTAVGVTYAAKSIVTQFISSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWMILIGVCTHLGCVPIANAGDF 231          
BLAST of CX295615 vs. ExPASy Swiss-Prot
Match: UCRI_RAT (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Rattus norvegicus GN=Uqcrfs1 PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 7.515e-30
Identity = 58/123 (47.15%), Postives = 85/123 (69.11%), Query Frame = 1
Query:  304 SKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVKNPEWLVVVGVCTHLGCIPLPNAGDF 672
            +++ F+Y +        A   +  + +FV SMSAS DVLA++ +E+ LS I  G  +  KWRGKP+F+R RT+++I    +V+V+ LRDPQ D  RVK PEW++++GVCTHLGC+P+ NAGDF
Sbjct:  109 ARKGFSYLVTATTTVGVAYAAKNAVSQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANAGDF 231          
BLAST of CX295615 vs. ExPASy Swiss-Prot
Match: UCRI_RHORU (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rhodospirillum rubrum GN=petA PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 3.730e-29
Identity = 67/128 (52.34%), Postives = 89/128 (69.53%), Query Frame = 1
Query:  289 PPGDASKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVKNPEWLVVVGVCTHLGCIPL-PNAGD 669
            P G++S+R F   ++ G   V A  + L +  F+  M+ + D LALAS EVD+S+I  G  +TV WRGKPVF+R RT+++I +A +VD ASLRDPQ D  RV+  +WLV+VGVCTHLGCIPL   AGD
Sbjct:   11 PGGESSRRDF---LIYGTTAVGAVGVALAVWPFIDFMNPAADTLALASTEVDVSAIAEGQAITVTWRGKPVFVRHRTQKEIVVARAVDPASLRDPQTDEARVQQAQWLVMVGVCTHLGCIPLGQKAGD 135          
BLAST of CX295615 vs. ExPASy Swiss-Prot
Match: UCRI_RICBR (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia bellii (strain RML369-C) GN=petA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.583e-26
Identity = 63/138 (45.65%), Postives = 86/138 (62.32%), Query Frame = 1
Query:  265 DEHNHERYPPGDASKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVK--NPEWLVVVGVCTHLGCIPLPNAGDF 672
            D +N  +    D SK +   F++     V A      +   + S++ S DVLAL+S+EVDLS+I  G TVTVKW+GKPVFI  RT + I  A +V ++ L DP+ED  RVK  +  WLV +G+CTHLGC+PL N GD+
Sbjct:    6 DTNNDNKVEFEDRSKTSRRDFMVLTASSVAAVGAACTLWPLINSLNPSADVLALSSIEVDLSNIAVGQTVTVKWQGKPVFITNRTPDKIAEARAVKMSELIDPEEDQDRVKAGHDNWLVTIGICTHLGCVPLANQGDY 143          
BLAST of CX295615 vs. ExPASy Swiss-Prot
Match: UCRI_RICTY (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia typhi GN=petA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.573e-25
Identity = 54/95 (56.84%), Postives = 72/95 (75.79%), Query Frame = 1
Query:  394 SMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVK--NPEWLVVVGVCTHLGCIPLPNAGDF 672
            S++ S DVLAL+S+EVDLSSI  G TVTVKW+GKP+FI  RT + I  A +V ++ L DP++D VRVK  +  WLV +G+CTHLGC+PL N G++
Sbjct:   40 SLNPSTDVLALSSIEVDLSSIAIGQTVTVKWQGKPIFITNRTPDGIASARAVKMSELIDPEKDEVRVKAGHDNWLVTIGICTHLGCVPLSNQGEY 134          
The following BLAST results are available for this feature:
BLAST of CX295615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
UCRI_GORGO4.406e-3047.97Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_BOVIN4.406e-3047.15Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_MOUSE5.754e-3047.15Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_AOTAZ5.754e-3045.53Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRIL_HUMAN5.754e-3047.97Cytochrome b-c1 complex subunit Rieske-like protei... [more]
UCRI_SAISC7.515e-3044.72Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_RAT7.515e-3047.15Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_RHORU3.730e-2952.34Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RICBR6.583e-2645.65Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RICTY5.573e-2556.84Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]

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Properties
Property NameValue
Genbank descriptionC05074A12SK DroRLeaf1 Citrus clementina cDNA clone C05074A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295615 ID=CX295615; Name=CX295615; organism=Citrus clementina; type=EST; length=673bp
TTACGCTGGAACTTGCAGCAGACAACCTCCGCCTTCCTATCTGGGAACTA
TCTTAATGACGGCGGCTGCGACGCTGCCGCTGCCGCTCAATCTCTCTCCA
GATCCGTCAATTCCCCGCTTCCTTTCTCTTTCACTTCCCACATTCCGCAT
CTCATCAGAGGTTTGTCTGCTGAAGCCCTCAGTCTAGGACGTGATTTGGG
TCTGATCTCAGACCTTCCAGCTACTGTGGCAGCTGTGAAGAACCCAACTT
CAAAAATTGTCTATGATGAGCACAATCATGAGCGTTATCCACCTGGTGAC
GCCAGCAAGCGTGCATTTGCTTATTTTATCTTGACAGGTGGCAGGTTTGT
GTATGCCTCCTTAATTCGTCTTTTGATCCTCAAGTTTGTTCTTAGCATGT
CTGCGAGCAAAGATGTCCTTGCCCTTGCCTCCCTTGAGGTTGACCTATCC
AGCATTGAACCCGGGACTACTGTTACAGTCAAGTGGCGTGGGAAGCCAGT
TTTCATCAGGCGTCGGACTGAAGAGGATATTCAGTTGGCTAACAGTGTTG
ATGTAGCGTCACTCCGGGACCCACAGGAAGATTCTGTCAGGGTTAAGAAT
CCAGAATGGCTTGTCGTTGTTGGTGTGTGCACACATTTGGGGTGCATTCC
TTTACCAAATGCTGGTGACTTTG
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