CX295615

Overview
NameCX295615
Unique NameCX295615
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295615 vs. ExPASy Swiss-Prot
Match: UCRI_RICPR (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia prowazekii GN=petA PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.766e-24
Identity = 52/95 (54.74%), Postives = 71/95 (74.74%), Query Frame = 1
Query:  394 SMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVK--NPEWLVVVGVCTHLGCIPLPNAGDF 672
            S + S DVLAL+S+EVDLS+I  G TVTVKW+GKP+FI  RT ++I  A +V ++ L DP+ D VRVK  +  WLV +G+CTHLGC+PL + G++
Sbjct:   40 SFNPSADVLALSSIEVDLSNIAIGQTVTVKWQGKPIFITNRTHDEIAAARAVKMSELIDPERDEVRVKAGHDNWLVTIGICTHLGCVPLSHKGEY 134          
BLAST of CX295615 vs. ExPASy Swiss-Prot
Match: UCRI_RICFE (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia felis GN=petA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.718e-24
Identity = 53/95 (55.79%), Postives = 70/95 (73.68%), Query Frame = 1
Query:  394 SMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVK--NPEWLVVVGVCTHLGCIPLPNAGDF 672
            S++ S DVLAL+S+EVDLS+I  G TVTVKW+GKPVFI  RT + I  A +V ++ L DP+ D  RVK  +  WLV +G+CTHLGC+PL N G++
Sbjct:   40 SLNPSADVLALSSIEVDLSNIAVGQTVTVKWQGKPVFITNRTPDKIAEARAVKMSELIDPETDEARVKAGHDNWLVTIGICTHLGCVPLANQGEY 134          
BLAST of CX295615 vs. ExPASy Swiss-Prot
Match: UCRI_RICCN (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia conorii GN=petA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.718e-24
Identity = 53/95 (55.79%), Postives = 70/95 (73.68%), Query Frame = 1
Query:  394 SMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVK--NPEWLVVVGVCTHLGCIPLPNAGDF 672
            S++ S DVLAL+S+EVDLS+I  G TVTVKW+GKPVFI  RT + I  A +V ++ L DP+ D  RVK  +  WLV +G+CTHLGC+PL N G++
Sbjct:   40 SLNPSADVLALSSIEVDLSNIAVGQTVTVKWQGKPVFITNRTPDKIAEARAVKMSELIDPEADQARVKAGHDNWLVTIGICTHLGCVPLANQGEY 134          
BLAST of CX295615 vs. ExPASy Swiss-Prot
Match: UCRI_PARDE (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Paracoccus denitrificans GN=petA PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.793e-23
Identity = 64/148 (43.24%), Postives = 83/148 (56.08%), Query Frame = 1
Query:  271 HNHERYPPGDASKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRD-----------PQEDSVRVKNP--EWLVVVGVCTHLGCIPL-PNAGDF 672
            H  E      A++R F Y+   G   V A      ++     M+ S DV ALAS++VD+S +E GT +TVKW GKPVFIRRRTE++IQ    VD+  L D           P  D  R  +   EWLV++GVCTHLGC+P+   AGDF
Sbjct:    3 HADEHAGDHGATRRDFLYYATAGAGTVAAGAAAWTLVN---QMNPSADVQALASIQVDVSGVETGTQLTVKWLGKPVFIRRRTEDEIQAGREVDLGQLIDRSAQNSNKPDAPATDENRTMDEAGEWLVMIGVCTHLGCVPIGDGAGDF 147          
BLAST of CX295615 vs. ExPASy Swiss-Prot
Match: UCRI_RHOCA (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rhodobacter capsulatus GN=petA PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.532e-22
Identity = 54/111 (48.65%), Postives = 72/111 (64.86%), Query Frame = 1
Query:  397 MSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVR------------------VKNPEWLVVVGVCTHLGCIPL-PNAGDF 672
            M+AS DV A+AS+ VD+S++E GT +TVKWRGKPVFIRRR E+DI+LA SV + +LRD   ++                        EWLV++GVCTHLGC+P+   +GDF
Sbjct:   38 MNASADVKAMASIFVDVSAVEVGTQLTVKWRGKPVFIRRRDEKDIELARSVPLGALRDTSAENANKPGAEATDENRTLPAFDGTNTGEWLVMLGVCTHLGCVPMGDKSGDF 148          
BLAST of CX295615 vs. ExPASy Swiss-Prot
Match: UCRI_BRAJA (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Bradyrhizobium japonicum GN=petA PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.423e-20
Identity = 48/99 (48.48%), Postives = 67/99 (67.68%), Query Frame = 1
Query:  385 FVLSMSASKDVLAL-ASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVK--NPEWLVVVGVCTHLGCIPLPNAGDF 672
            F+  M+     +A  A +EVDLS I  G  + V WRGKP++I  RT++ I  A +V+VASL DPQ D  RVK  + +WLVV+G+CTHLGCIP+ + G++
Sbjct:   35 FISQMNPDASTIAAGAPIEVDLSPIAEGQDIKVFWRGKPIYISHRTKKQIDEARAVNVASLPDPQSDEARVKSGHEQWLVVIGICTHLGCIPIAHEGNY 133          
BLAST of CX295615 vs. ExPASy Swiss-Prot
Match: UCRI_RHOVI (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rhodopseudomonas viridis GN=petA PE=3 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 5.398e-20
Identity = 54/128 (42.19%), Postives = 75/128 (58.59%), Query Frame = 1
Query:  298 DASKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLAL-ASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVK--NPEWLVVVGVCTHLGCIPLPNAGDF 672
            +A++R F Y        V A+ +  +   F+  M+     +A  A +++D+S +  G  V V WRGKP+FIR RT ++IQ   + DV +L DPQ DS RVK    EWLVV   CTHLGCIPL + GD+
Sbjct:    8 EATRRDFLYVATAA---VGAAGVAAVAWPFITQMNPDAATIAAGAPIDIDISPVTEGQIVRVFWRGKPIFIRHRTAKEIQSEEAADVGALIDPQPDSARVKPGKAEWLVVYASCTHLGCIPLGHQGDW 132          
BLAST of CX295615 vs. ExPASy Swiss-Prot
Match: UCRI_RHOSH (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rhodobacter sphaeroides GN=petA PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.208e-20
Identity = 56/138 (40.58%), Postives = 77/138 (55.80%), Query Frame = 1
Query:  304 SKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRV--------------KNPEWLVVVGVCTHLGCIPLPN-AGDF 672
            ++R F Y+   G   V        +   +  M+ S DV ALAS+ VD+SS+EPG  +TVK+ GKP+FIRRRTE DI+L  SV +  L D    +  +              +  EWLV+ GVCTHLGC+P+   +GDF
Sbjct:   10 TRRDFLYYATAGAGAVATGAA---VWPLINQMNPSADVQALASIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWGVCTHLGCVPIGGVSGDF 144          
BLAST of CX295615 vs. ExPASy Swiss-Prot
Match: UCRI_CHRVI (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Chromatium vinosum GN=petA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.685e-11
Identity = 39/102 (38.24%), Postives = 56/102 (54.90%), Query Frame = 1
Query:  376 ILKFVLSMSASKDVLAL-ASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVD---------VASLRDPQEDSVRVKNPEWLVVVGVCTHLGCIP 651
            ++ FV SM+ S    A  A +E D+S +EPG  + VKWRG PV++  R+ E +   +S D         V    D  ++  R   PE+LV +G+CTHLGC P
Sbjct:   40 LVPFVASMNPSARARAAGAPVEADISKLEPGALLRVKWRGMPVWVVHRSSEMLAALSSNDPKLVDPTSEVPQQPDYCKNPTRSIKPEYLVAIGICTHLGCSP 141          
The following BLAST results are available for this feature:
BLAST of CX295615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
UCRI_RICPR2.766e-2454.74Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RICFE4.718e-2455.79Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RICCN4.718e-2455.79Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_PARDE1.793e-2343.24Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RHOCA7.532e-2248.65Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_BRAJA2.423e-2048.48Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RHOVI5.398e-2042.19Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RHOSH9.208e-2040.58Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_CHRVI2.685e-1138.24Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]

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Properties
Property NameValue
Genbank descriptionC05074A12SK DroRLeaf1 Citrus clementina cDNA clone C05074A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295615 ID=CX295615; Name=CX295615; organism=Citrus clementina; type=EST; length=673bp
TTACGCTGGAACTTGCAGCAGACAACCTCCGCCTTCCTATCTGGGAACTA
TCTTAATGACGGCGGCTGCGACGCTGCCGCTGCCGCTCAATCTCTCTCCA
GATCCGTCAATTCCCCGCTTCCTTTCTCTTTCACTTCCCACATTCCGCAT
CTCATCAGAGGTTTGTCTGCTGAAGCCCTCAGTCTAGGACGTGATTTGGG
TCTGATCTCAGACCTTCCAGCTACTGTGGCAGCTGTGAAGAACCCAACTT
CAAAAATTGTCTATGATGAGCACAATCATGAGCGTTATCCACCTGGTGAC
GCCAGCAAGCGTGCATTTGCTTATTTTATCTTGACAGGTGGCAGGTTTGT
GTATGCCTCCTTAATTCGTCTTTTGATCCTCAAGTTTGTTCTTAGCATGT
CTGCGAGCAAAGATGTCCTTGCCCTTGCCTCCCTTGAGGTTGACCTATCC
AGCATTGAACCCGGGACTACTGTTACAGTCAAGTGGCGTGGGAAGCCAGT
TTTCATCAGGCGTCGGACTGAAGAGGATATTCAGTTGGCTAACAGTGTTG
ATGTAGCGTCACTCCGGGACCCACAGGAAGATTCTGTCAGGGTTAAGAAT
CCAGAATGGCTTGTCGTTGTTGGTGTGTGCACACATTTGGGGTGCATTCC
TTTACCAAATGCTGGTGACTTTG
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