CX295620

Overview
NameCX295620
Unique NameCX295620
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ARP3_DROME (Actin-related protein 3 OS=Drosophila melanogaster GN=Arp66B PE=1 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 1.954e-23
Identity = 54/112 (48.21%), Postives = 75/112 (66.96%), Query Frame = 1
Query:  352 PAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            PA VID GTGY+K+GFAGN EP FI+P+ +A+ ES      ++ +         G+  DLDFFIGDEA      ++ Y++ YP+RHG V++WD MER+ +QC+F YLR +PE
Sbjct:    6 PACVIDVGTGYSKLGFAGNKEPQFIIPSAIAIKESARVGDTNTRRIT------KGI-EDLDFFIGDEAF----DATGYSIKYPVRHGLVEDWDLMERFLEQCVFKYLRAEPE 106          
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ARP3_RAT (Actin-related protein 3 OS=Rattus norvegicus GN=Actr3 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.427e-23
Identity = 59/114 (51.75%), Postives = 74/114 (64.91%), Query Frame = 1
Query:  352 PAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNA--GVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            PA V+D GTGYTK+G+AGN EP FI+P+ +A+ E        S+K    AQ     GV  DLDFFIGDEA+ K     TY   +PIRHG V++WD MER+ +Q IF YLR +PE
Sbjct:    6 PACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKE--------SAKVGDQAQRRVMKGV-DDLDFFIGDEAIEK----PTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPE 106          
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ARP3_PONAB (Actin-related protein 3 OS=Pongo abelii GN=ACTR3 PE=2 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 7.427e-23
Identity = 59/114 (51.75%), Postives = 74/114 (64.91%), Query Frame = 1
Query:  352 PAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNA--GVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            PA V+D GTGYTK+G+AGN EP FI+P+ +A+ E        S+K    AQ     GV  DLDFFIGDEA+ K     TY   +PIRHG V++WD MER+ +Q IF YLR +PE
Sbjct:    6 PACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKE--------SAKVGDQAQRRVMKGV-DDLDFFIGDEAIEK----PTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPE 106          
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ARP3_MOUSE (Actin-related protein 3 OS=Mus musculus GN=Actr3 PE=1 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 7.427e-23
Identity = 59/114 (51.75%), Postives = 74/114 (64.91%), Query Frame = 1
Query:  352 PAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNA--GVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            PA V+D GTGYTK+G+AGN EP FI+P+ +A+ E        S+K    AQ     GV  DLDFFIGDEA+ K     TY   +PIRHG V++WD MER+ +Q IF YLR +PE
Sbjct:    6 PACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKE--------SAKVGDQAQRRVMKGV-DDLDFFIGDEAIEK----PTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPE 106          
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ARP3_HUMAN (Actin-related protein 3 OS=Homo sapiens GN=ACTR3 PE=1 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 7.427e-23
Identity = 59/114 (51.75%), Postives = 74/114 (64.91%), Query Frame = 1
Query:  352 PAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNA--GVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            PA V+D GTGYTK+G+AGN EP FI+P+ +A+ E        S+K    AQ     GV  DLDFFIGDEA+ K     TY   +PIRHG V++WD MER+ +Q IF YLR +PE
Sbjct:    6 PACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKE--------SAKVGDQAQRRVMKGV-DDLDFFIGDEAIEK----PTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPE 106          
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ARP3_BOVIN (Actin-related protein 3 OS=Bos taurus GN=ACTR3 PE=1 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 7.427e-23
Identity = 59/114 (51.75%), Postives = 74/114 (64.91%), Query Frame = 1
Query:  352 PAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNA--GVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            PA V+D GTGYTK+G+AGN EP FI+P+ +A+ E        S+K    AQ     GV  DLDFFIGDEA+ K     TY   +PIRHG V++WD MER+ +Q IF YLR +PE
Sbjct:    6 PACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKE--------SAKVGDQAQRRVMKGV-DDLDFFIGDEAIEK----PTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPE 106          
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ARP3_CHICK (Actin-related protein 3 OS=Gallus gallus GN=ACTR3 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.699e-23
Identity = 57/115 (49.57%), Postives = 73/115 (63.48%), Query Frame = 1
Query:  352 PAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMA---DLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            PA V+D GTGYTK+G+AGN EP FI+P+ +A+ ES          A  + Q    V+    DLDFFIGDEA+ K     TY   +PIRHG V++WD MER+ +Q IF YLR +PE
Sbjct:    6 PACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKES----------AKVVDQAQRRVLKGVDDLDFFIGDEAIEK----PTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPE 106          
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ARP3_TAKRU (Actin-related protein 3 OS=Takifugu rubripes GN=actr3 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.161e-22
Identity = 57/112 (50.89%), Postives = 74/112 (66.07%), Query Frame = 1
Query:  352 PAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            PA V+D GTGYTK+G+AGN EP FI+P+ +A+ ES    S+   +A    +   GV  DLDFFIGDEA+ K      Y   +PIRHG V++WD MER+ +Q IF YLR +PE
Sbjct:    6 PACVVDCGTGYTKLGYAGNTEPQFIMPSCIAIKES----SKVGDQAQ--RRMMRGV-DDLDFFIGDEAIDK----PPYATKWPIRHGIVEDWDLMERFMEQIIFKYLRAEPE 106          
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ARP3B_MOUSE (Actin-related protein 3B OS=Mus musculus GN=Actr3b PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.822e-22
Identity = 56/117 (47.86%), Postives = 73/117 (62.39%), Query Frame = 1
Query:  346 SRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMA---DLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            S P  V+D GTGYTK+G+AGN EP FI+P+ +A+ ES          A  + Q    V+    DLDFFIGDEA+ K     TY   +PIRHG V++WD MER+ +Q +F YLR +PE
Sbjct:    4 SLPPCVVDCGTGYTKLGYAGNTEPQFIIPSCIAIRES----------AKVVDQAQRRVLRGVDDLDFFIGDEAIDK----PTYATKWPIRHGIVEDWDLMERFMEQVVFKYLRAEPE 106          
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ARP3B_HUMAN (Actin-related protein 3B OS=Homo sapiens GN=ACTR3B PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.686e-22
Identity = 55/117 (47.01%), Postives = 73/117 (62.39%), Query Frame = 1
Query:  346 SRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMA---DLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            S P  V+D GTGYTK+G+AGN EP FI+P+ +A+ ES          A  + Q    V+    DLDFFIGDEA+ K     TY   +PIRHG +++WD MER+ +Q +F YLR +PE
Sbjct:    4 SLPPCVVDCGTGYTKLGYAGNTEPQFIIPSCIAIRES----------AKVVDQAQRRVLRGVDDLDFFIGDEAIDK----PTYATKWPIRHGIIEDWDLMERFMEQVVFKYLRAEPE 106          
The following BLAST results are available for this feature:
BLAST of CX295620 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 280
Match NameE-valueIdentityDescription
ARP3_DROME1.954e-2348.21Actin-related protein 3 OS=Drosophila melanogaster... [more]
ARP3_RAT7.427e-2351.75Actin-related protein 3 OS=Rattus norvegicus GN=Ac... [more]
ARP3_PONAB7.427e-2351.75Actin-related protein 3 OS=Pongo abelii GN=ACTR3 P... [more]
ARP3_MOUSE7.427e-2351.75Actin-related protein 3 OS=Mus musculus GN=Actr3 P... [more]
ARP3_HUMAN7.427e-2351.75Actin-related protein 3 OS=Homo sapiens GN=ACTR3 P... [more]
ARP3_BOVIN7.427e-2351.75Actin-related protein 3 OS=Bos taurus GN=ACTR3 PE=... [more]
ARP3_CHICK9.699e-2349.57Actin-related protein 3 OS=Gallus gallus GN=ACTR3 ... [more]
ARP3_TAKRU2.161e-2250.89Actin-related protein 3 OS=Takifugu rubripes GN=ac... [more]
ARP3B_MOUSE2.822e-2247.86Actin-related protein 3B OS=Mus musculus GN=Actr3b... [more]
ARP3B_HUMAN3.686e-2247.01Actin-related protein 3B OS=Homo sapiens GN=ACTR3B... [more]

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Properties
Property NameValue
Genbank descriptionC05074B05SK DroRLeaf1 Citrus clementina cDNA clone C05074B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295620 ID=CX295620; Name=CX295620; organism=Citrus clementina; type=EST; length=704bp
GAGGGGAAACAGAGAGGGAGAAAAAAAAAAGAAAAAAAAAAGAAAGAGGA
AAATGAAAAGACAGTGATAGCAATGATGAAGAAGTTGATGAGAGAGGCTT
ATCATTTCCATTATCGATGTTGTTGTTGAAATGGGTGTTGGATTTTGTAC
CAACTTACAAAGCTGCCGTGCGTTGAGTCGCTCCTTTCACTTGCGATTCA
AGTCTTTCGTATATCACCATCACCAACACTTTCTTCACGATCATGTTCCA
TTGCCTTAACCCTTCTCTCGGATCTCAGTTGCGGATCCCTCGTTACCACC
ACCACCACGATTCTCACCTCCTTTCTCTTTACAATGGACCCCACTTCTCG
TCCTGCCGTCGTCATCGACAACGGCACCGGGTATACTAAGATGGGTTTTG
CGGGTAATGTAGAGCCGTGTTTTATTCTTCCGACTGTAGTAGCTGTAAAC
GAGTCGTTTTTAAATCAATCAAGATCTTCGTCAAAGGCCAATTGGCTTGC
ACAGTACAACGCAGGCGTAATGGCCGACCTTGACTTCTTTATTGGAGATG
AAGCAGTCACAAAATCGCGATCTAGTAGTACCTATAACCTTAGTTATCCT
ATTAGGCATGGTCAGGTTGATAATTGGGATGCTATGGAGAGGTATTGGCA
GCAGTGTATATTTAATTACTTGCGTTGTGATCCAGAGATCACTACTTTCT
GTTG
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