CX295620

Overview
NameCX295620
Unique NameCX295620
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACT_GIALA (Actin OS=Giardia lamblia PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.658e-14
Identity = 45/111 (40.54%), Postives = 56/111 (50.45%), Query Frame = 1
Query:  352 PAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDP 684
            PA+VIDNG+G  K GFAG+  P  + PTVV   +       S+ K                 +IGDEA+ K        LSYPI HGQ+ +WD ME+ W  C FN LR  P
Sbjct:    6 PAIVIDNGSGMCKAGFAGDDAPRAVFPTVVGRPKRETVLVGSTHKEE---------------YIGDEALAKR---GVLKLSYPIEHGQIKDWDMMEKVWHHCYFNELRAQP 98          
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACT_EUPCR (Actin, cytoplasmic OS=Euplotes crassus PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.127e-13
Identity = 38/117 (32.48%), Postives = 60/117 (51.28%), Query Frame = 1
Query:  337 DPTSRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            +  ++ A+V+DNG+G  K GFAG  +PC + P+VVA  ++               Q   G   + D F+GDE   + +      LSYPI+ G + +WD M++ W    +N LR + E
Sbjct:    4 EENAKEAIVVDNGSGVVKAGFAGENQPCSVFPSVVAKPKT--------------KQVIVGGAGNKDCFVGDE---RQQKRGVCTLSYPIKSGMIKDWDGMQKIWDYTFYNELRIETE 103          
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACT5_ARATH (Putative actin-5 OS=Arabidopsis thaliana GN=ACT5 PE=5 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.552e-12
Identity = 43/114 (37.72%), Postives = 55/114 (48.25%), Query Frame = 1
Query:  355 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLD---FFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            A+V DNGTG  K GFAG+  P  + P+VV                      + GVM  +D    F+GDEA  +       +L YPI HG V NWD ME+ W    +N LR +PE
Sbjct:   10 AIVCDNGTGMVKAGFAGDDAPRAVFPSVVG------------------RPRHRGVMVGMDEKDTFVGDEAQARR---GILSLKYPIEHGVVSNWDDMEKIWHHTFYNELRLEPE 102          
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACT_PHYME (Actin OS=Phytophthora megasperma PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.458e-12
Identity = 43/114 (37.72%), Postives = 56/114 (49.12%), Query Frame = 1
Query:  355 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            AVVIDNG+G  K GFAG+  P  + P++V + +                  + G+M  +   D +IGDEA  K        L YPI HG V NWD ME+ W    +N LR  PE
Sbjct:    7 AVVIDNGSGMCKAGFAGDDAPRAVFPSIVGMPK------------------HLGIMVGMNQKDAYIGDEAQAKR---GVLTLRYPIEHGIVTNWDDMEKIWSHTFYNELRVAPE 99          
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACT2_PHYIN (Actin-2 OS=Phytophthora infestans GN=ACTB PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.458e-12
Identity = 43/114 (37.72%), Postives = 56/114 (49.12%), Query Frame = 1
Query:  355 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            AVVIDNG+G  K GFAG+  P  + P++V + +                  + G+M  +   D +IGDEA  K        L YPI HG V NWD ME+ W    +N LR  PE
Sbjct:    7 AVVIDNGSGMCKAGFAGDDAPRAVFPSIVGMPK------------------HLGIMVGMNQKDAYIGDEAQAKR---GVLTLRYPIEHGIVTNWDDMEKIWSHTFYNELRVAPE 99          
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACT_TRYCR (Actin OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.516e-12
Identity = 40/118 (33.90%), Postives = 57/118 (48.31%), Query Frame = 1
Query:  334 MDPTSRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            M    + A+V DNG+G  K GF+G+   C + P++V   ++      S+SK                 F+GDEA  K       +L YPI HG V NWD ME+ W    +N +R +PE
Sbjct:    1 MSDEEQSAIVCDNGSGMVKAGFSGDDALCHVFPSIVGRPKNEQAMMGSASKK---------------LFVGDEAQAKR---GVLSLKYPIEHGIVTNWDDMEKIWHHTFYNDVRVNPE 100          
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACT2_SCHCO (Actin-2 OS=Schizophyllum commune GN=ACT2 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.516e-12
Identity = 44/114 (38.60%), Postives = 54/114 (47.37%), Query Frame = 1
Query:  355 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            AVVIDNG+G  K GFAG+  P  + P++V                      + GVM  L   D ++GDEA  K        L YPI HG V NWD ME+ W    +N LR  PE
Sbjct:    7 AVVIDNGSGMCKAGFAGDDAPRAVFPSIVG------------------RPRHHGVMVGLSNKDSYVGDEAQAKR---GVLTLKYPIEHGTVTNWDDMEKIWHHTYYNELRVAPE 99          
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACT22_DICDI (Putative actin-22 OS=Dictyostelium discoideum GN=act22 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.516e-12
Identity = 44/121 (36.36%), Postives = 57/121 (47.11%), Query Frame = 1
Query:  334 MDPTSRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            MD     A+VIDNG+G  K GFAG+  P  + P++V                      + GVM  +   D ++GDEA +K        L YPI HG V NWD ME+ W    +N LR  PE
Sbjct:    1 MDGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVG------------------RPRHTGVMVGMGQKDSYVGDEAQSKR---GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 100          
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACT1_PLAYO (Actin-1 OS=Plasmodium yoelii yoelii GN=PY02240 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.516e-12
Identity = 43/114 (37.72%), Postives = 55/114 (48.25%), Query Frame = 1
Query:  355 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            A+VIDNG+G  K G AG+  P  + P++V   +                  N G+M  +   D F+GDEA TK        L YPI HG V NWD ME+ W    +N LR  PE
Sbjct:    8 ALVIDNGSGNVKAGVAGDDAPRSVFPSIVGRPK------------------NPGIMVGMEEKDAFVGDEAQTKR---GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRAAPE 100          
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACT1_PLABA (Actin-1 OS=Plasmodium berghei (strain Anka) GN=PB000323.01.0 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.516e-12
Identity = 43/114 (37.72%), Postives = 55/114 (48.25%), Query Frame = 1
Query:  355 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            A+VIDNG+G  K G AG+  P  + P++V   +                  N G+M  +   D F+GDEA TK        L YPI HG V NWD ME+ W    +N LR  PE
Sbjct:    8 ALVIDNGSGNVKAGVAGDDAPRSVFPSIVGRPK------------------NPGIMVGMEEKDAFVGDEAQTKR---GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRAAPE 100          
The following BLAST results are available for this feature:
BLAST of CX295620 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 280
Match NameE-valueIdentityDescription
ACT_GIALA1.658e-1440.54Actin OS=Giardia lamblia PE=3 SV=1[more]
ACT_EUPCR3.127e-1332.48Actin, cytoplasmic OS=Euplotes crassus PE=3 SV=1[more]
ACT5_ARATH1.552e-1237.72Putative actin-5 OS=Arabidopsis thaliana GN=ACT5 P... [more]
ACT_PHYME3.458e-1237.72Actin OS=Phytophthora megasperma PE=3 SV=1[more]
ACT2_PHYIN3.458e-1237.72Actin-2 OS=Phytophthora infestans GN=ACTB PE=2 SV=... [more]
ACT_TRYCR4.516e-1233.90Actin OS=Trypanosoma cruzi PE=3 SV=1[more]
ACT2_SCHCO4.516e-1238.60Actin-2 OS=Schizophyllum commune GN=ACT2 PE=3 SV=1[more]
ACT22_DICDI4.516e-1236.36Putative actin-22 OS=Dictyostelium discoideum GN=a... [more]
ACT1_PLAYO4.516e-1237.72Actin-1 OS=Plasmodium yoelii yoelii GN=PY02240 PE=... [more]
ACT1_PLABA4.516e-1237.72Actin-1 OS=Plasmodium berghei (strain Anka) GN=PB0... [more]

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Properties
Property NameValue
Genbank descriptionC05074B05SK DroRLeaf1 Citrus clementina cDNA clone C05074B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295620 ID=CX295620; Name=CX295620; organism=Citrus clementina; type=EST; length=704bp
GAGGGGAAACAGAGAGGGAGAAAAAAAAAAGAAAAAAAAAAGAAAGAGGA
AAATGAAAAGACAGTGATAGCAATGATGAAGAAGTTGATGAGAGAGGCTT
ATCATTTCCATTATCGATGTTGTTGTTGAAATGGGTGTTGGATTTTGTAC
CAACTTACAAAGCTGCCGTGCGTTGAGTCGCTCCTTTCACTTGCGATTCA
AGTCTTTCGTATATCACCATCACCAACACTTTCTTCACGATCATGTTCCA
TTGCCTTAACCCTTCTCTCGGATCTCAGTTGCGGATCCCTCGTTACCACC
ACCACCACGATTCTCACCTCCTTTCTCTTTACAATGGACCCCACTTCTCG
TCCTGCCGTCGTCATCGACAACGGCACCGGGTATACTAAGATGGGTTTTG
CGGGTAATGTAGAGCCGTGTTTTATTCTTCCGACTGTAGTAGCTGTAAAC
GAGTCGTTTTTAAATCAATCAAGATCTTCGTCAAAGGCCAATTGGCTTGC
ACAGTACAACGCAGGCGTAATGGCCGACCTTGACTTCTTTATTGGAGATG
AAGCAGTCACAAAATCGCGATCTAGTAGTACCTATAACCTTAGTTATCCT
ATTAGGCATGGTCAGGTTGATAATTGGGATGCTATGGAGAGGTATTGGCA
GCAGTGTATATTTAATTACTTGCGTTGTGATCCAGAGATCACTACTTTCT
GTTG
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