CX295620

Overview
NameCX295620
Unique NameCX295620
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACTH_CHICK (Actin, gamma-enteric smooth muscle OS=Gallus gallus GN=ACTG2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 40/114 (35.09%), Postives = 54/114 (47.37%), Query Frame = 1 
Query:  355 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            A+V DNG+G  K GFAG+  P  + P++V                      + GVM  +   D ++GDEA +K        L YPI HG + NWD ME+ W    +N LR  PE
Sbjct:    8 ALVCDNGSGLCKAGFAGDDAPRAVFPSIVG------------------RPRHQGVMVGMGQKDSYVGDEAQSKR---GILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPE 100
[Close]
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACTH_BOVIN (Actin, gamma-enteric smooth muscle OS=Bos taurus GN=ACTG2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 40/114 (35.09%), Postives = 54/114 (47.37%), Query Frame = 1 
Query:  355 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            A+V DNG+G  K GFAG+  P  + P++V                      + GVM  +   D ++GDEA +K        L YPI HG + NWD ME+ W    +N LR  PE
Sbjct:    8 ALVCDNGSGLCKAGFAGDDAPRAVFPSIVG------------------RPRHQGVMVGMGQKDSYVGDEAQSKR---GILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPE 100
[Close]
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACTA_RAT (Actin, aortic smooth muscle OS=Rattus norvegicus GN=Acta2 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 40/114 (35.09%), Postives = 54/114 (47.37%), Query Frame = 1 
Query:  355 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            A+V DNG+G  K GFAG+  P  + P++V                      + GVM  +   D ++GDEA +K        L YPI HG + NWD ME+ W    +N LR  PE
Sbjct:    9 ALVCDNGSGLCKAGFAGDDAPRAVFPSIVG------------------RPRHQGVMVGMGQKDSYVGDEAQSKR---GILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPE 101
[Close]
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACTA_RABIT (Actin, aortic smooth muscle OS=Oryctolagus cuniculus GN=ACTA2 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 40/114 (35.09%), Postives = 54/114 (47.37%), Query Frame = 1 
Query:  355 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            A+V DNG+G  K GFAG+  P  + P++V                      + GVM  +   D ++GDEA +K        L YPI HG + NWD ME+ W    +N LR  PE
Sbjct:    9 ALVCDNGSGLCKAGFAGDDAPRAVFPSIVG------------------RPRHQGVMVGMGQKDSYVGDEAQSKR---GILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPE 101
[Close]
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACTA_MOUSE (Actin, aortic smooth muscle OS=Mus musculus GN=Acta2 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 40/114 (35.09%), Postives = 54/114 (47.37%), Query Frame = 1 
Query:  355 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            A+V DNG+G  K GFAG+  P  + P++V                      + GVM  +   D ++GDEA +K        L YPI HG + NWD ME+ W    +N LR  PE
Sbjct:    9 ALVCDNGSGLCKAGFAGDDAPRAVFPSIVG------------------RPRHQGVMVGMGQKDSYVGDEAQSKR---GILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPE 101
[Close]
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACTA_HUMAN (Actin, aortic smooth muscle OS=Homo sapiens GN=ACTA2 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 40/114 (35.09%), Postives = 54/114 (47.37%), Query Frame = 1 
Query:  355 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            A+V DNG+G  K GFAG+  P  + P++V                      + GVM  +   D ++GDEA +K        L YPI HG + NWD ME+ W    +N LR  PE
Sbjct:    9 ALVCDNGSGLCKAGFAGDDAPRAVFPSIVG------------------RPRHQGVMVGMGQKDSYVGDEAQSKR---GILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPE 101
[Close]
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACTA_CHICK (Actin, aortic smooth muscle OS=Gallus gallus GN=ACTA2 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 40/114 (35.09%), Postives = 54/114 (47.37%), Query Frame = 1 
Query:  355 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            A+V DNG+G  K GFAG+  P  + P++V                      + GVM  +   D ++GDEA +K        L YPI HG + NWD ME+ W    +N LR  PE
Sbjct:    9 ALVCDNGSGLCKAGFAGDDAPRAVFPSIVG------------------RPRHQGVMVGMGQKDSYVGDEAQSKR---GILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPE 101
[Close]
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACTA_BOVIN (Actin, aortic smooth muscle OS=Bos taurus GN=ACTA2 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 40/114 (35.09%), Postives = 54/114 (47.37%), Query Frame = 1 
Query:  355 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            A+V DNG+G  K GFAG+  P  + P++V                      + GVM  +   D ++GDEA +K        L YPI HG + NWD ME+ W    +N LR  PE
Sbjct:    9 ALVCDNGSGLCKAGFAGDDAPRAVFPSIVG------------------RPRHQGVMVGMGQKDSYVGDEAQSKR---GILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPE 101
[Close]
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACT1_HALRO (Actin, muscle 1A OS=Halocynthia roretzi GN=MA1A PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 40/114 (35.09%), Postives = 53/114 (46.49%), Query Frame = 1 
Query:  355 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            A+V DNG+G  K GFAG+  P  + P+ V                      + GVM  +   D ++GDEA +K        L YPI HG + NWD ME+ W    +N LR  PE
Sbjct:   10 AIVCDNGSGLVKSGFAGDDAPRAVFPSTVG------------------RPRHQGVMVGMGQKDSYVGDEAQSKR---GILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPE 102
[Close]
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACT1_ECHGR (Actin-1 OS=Echinococcus granulosus GN=ACTI PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 39/110 (35.45%), Postives = 55/110 (50.00%), Query Frame = 1 
Query:  358 VVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            +V+DNG+G  K GFAG+  P  + P++V          R   ++  +       M + D ++GDEA +K        L YPI HG V NWD ME+ W    +N LR  PE
Sbjct:    8 LVVDNGSGMCKAGFAGDDSPRAVFPSLVG---------RPRQQSIMVG------MGNKDSYVGDEAQSKR---GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 99
The following BLAST results are available for this feature:
BLAST of CX295620 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 280
Match NameE-valueIdentityDescription
ACTH_CHICK8.517e-1135.09Actin, gamma-enteric smooth muscle OS=Gallus gallu... [more]
ACTH_BOVIN8.517e-1135.09Actin, gamma-enteric smooth muscle OS=Bos taurus G... [more]
ACTA_RAT8.517e-1135.09Actin, aortic smooth muscle OS=Rattus norvegicus G... [more]
ACTA_RABIT8.517e-1135.09Actin, aortic smooth muscle OS=Oryctolagus cunicul... [more]
ACTA_MOUSE8.517e-1135.09Actin, aortic smooth muscle OS=Mus musculus GN=Act... [more]
ACTA_HUMAN8.517e-1135.09Actin, aortic smooth muscle OS=Homo sapiens GN=ACT... [more]
ACTA_CHICK8.517e-1135.09Actin, aortic smooth muscle OS=Gallus gallus GN=AC... [more]
ACTA_BOVIN8.517e-1135.09Actin, aortic smooth muscle OS=Bos taurus GN=ACTA2... [more]
ACT1_HALRO8.517e-1135.09Actin, muscle 1A OS=Halocynthia roretzi GN=MA1A PE... [more]
ACT1_ECHGR8.517e-1135.45Actin-1 OS=Echinococcus granulosus GN=ACTI PE=3 SV... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05074B05SK DroRLeaf1 Citrus clementina cDNA clone C05074B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295620 ID=CX295620; Name=CX295620; organism=Citrus clementina; type=EST; length=704bp
GAGGGGAAACAGAGAGGGAGAAAAAAAAAAGAAAAAAAAAAGAAAGAGGA
AAATGAAAAGACAGTGATAGCAATGATGAAGAAGTTGATGAGAGAGGCTT
ATCATTTCCATTATCGATGTTGTTGTTGAAATGGGTGTTGGATTTTGTAC
CAACTTACAAAGCTGCCGTGCGTTGAGTCGCTCCTTTCACTTGCGATTCA
AGTCTTTCGTATATCACCATCACCAACACTTTCTTCACGATCATGTTCCA
TTGCCTTAACCCTTCTCTCGGATCTCAGTTGCGGATCCCTCGTTACCACC
ACCACCACGATTCTCACCTCCTTTCTCTTTACAATGGACCCCACTTCTCG
TCCTGCCGTCGTCATCGACAACGGCACCGGGTATACTAAGATGGGTTTTG
CGGGTAATGTAGAGCCGTGTTTTATTCTTCCGACTGTAGTAGCTGTAAAC
GAGTCGTTTTTAAATCAATCAAGATCTTCGTCAAAGGCCAATTGGCTTGC
ACAGTACAACGCAGGCGTAATGGCCGACCTTGACTTCTTTATTGGAGATG
AAGCAGTCACAAAATCGCGATCTAGTAGTACCTATAACCTTAGTTATCCT
ATTAGGCATGGTCAGGTTGATAATTGGGATGCTATGGAGAGGTATTGGCA
GCAGTGTATATTTAATTACTTGCGTTGTGATCCAGAGATCACTACTTTCT
GTTG
back to top