CX295620

Overview
NameCX295620
Unique NameCX295620
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACT1_DICDI (Major actin OS=Dictyostelium discoideum GN=act1 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.516e-12
Identity = 44/121 (36.36%), Postives = 57/121 (47.11%), Query Frame = 1
Query:  334 MDPTSRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            MD     A+VIDNG+G  K GFAG+  P  + P++V                      + GVM  +   D ++GDEA +K        L YPI HG V NWD ME+ W    +N LR  PE
Sbjct:    1 MDGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVG------------------RPRHTGVMVGMGQKDSYVGDEAQSKR---GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 100          
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACT_PICPG (Actin OS=Pichia pastoris (strain GS115) GN=ACT1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.898e-12
Identity = 45/121 (37.19%), Postives = 57/121 (47.11%), Query Frame = 1
Query:  334 MDPTSRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            MD     A+VIDNG+G  K G+AG+  P  + P+VV                      + GVM  +   D F+GDEA +K        L YPI HG V NWD ME+ W    +N LR  PE
Sbjct:    1 MDGEDVAALVIDNGSGMCKAGYAGDDAPHTVFPSVVG------------------RPRHQGVMVGMGQKDSFVGDEAQSKR---GILTLRYPIEHGIVTNWDDMEKIWHHTFYNELRLAPE 100          
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACT_CYAME (Actin OS=Cyanidioschyzon merolae PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.898e-12
Identity = 42/111 (37.84%), Postives = 56/111 (50.45%), Query Frame = 1
Query:  355 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            A+VIDNG+G  K GFAG+  P  + P++V          R   +A  +       M   D ++GDEA +K       +L YPI HG V NWD ME+ W    +N LR  PE
Sbjct:    8 ALVIDNGSGMVKAGFAGDDAPRAVFPSIVG---------RPRHQAVMVG------MGQKDSYVGDEAQSKR---GILSLKYPIEHGIVTNWDDMEKIWYHTFYNELRISPE 100          
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACT1_PLAFX (Actin-1 OS=Plasmodium falciparum (isolate HB3) PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.898e-12
Identity = 42/114 (36.84%), Postives = 55/114 (48.25%), Query Frame = 1
Query:  355 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            A+V+DNG+G  K G AG+  P  + P++V   +                  N G+M  +   D F+GDEA TK        L YPI HG V NWD ME+ W    +N LR  PE
Sbjct:    8 ALVVDNGSGNVKAGVAGDDAPRSVFPSIVGRPK------------------NPGIMVGMEEKDAFVGDEAQTKR---GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRAAPE 100          
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACT1_PLAFO (Actin-1 OS=Plasmodium falciparum (isolate NF54) PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.898e-12
Identity = 42/114 (36.84%), Postives = 55/114 (48.25%), Query Frame = 1
Query:  355 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            A+V+DNG+G  K G AG+  P  + P++V   +                  N G+M  +   D F+GDEA TK        L YPI HG V NWD ME+ W    +N LR  PE
Sbjct:    8 ALVVDNGSGNVKAGVAGDDAPRSVFPSIVGRPK------------------NPGIMVGMEEKDAFVGDEAQTKR---GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRAAPE 100          
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACT1_PLAF7 (Actin-1 OS=Plasmodium falciparum (isolate 3D7) GN=PFL2215w PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.898e-12
Identity = 42/114 (36.84%), Postives = 55/114 (48.25%), Query Frame = 1
Query:  355 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            A+V+DNG+G  K G AG+  P  + P++V   +                  N G+M  +   D F+GDEA TK        L YPI HG V NWD ME+ W    +N LR  PE
Sbjct:    8 ALVVDNGSGNVKAGVAGDDAPRSVFPSIVGRPK------------------NPGIMVGMEEKDAFVGDEAQTKR---GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRAAPE 100          
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACT_ASHGO (Actin OS=Ashbya gossypii GN=ACT1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 43/121 (35.54%), Postives = 57/121 (47.11%), Query Frame = 1
Query:  334 MDPTSRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            MD     A+VIDNG+G  K GFAG+  P  + P++V                      + G+M  +   D ++GDEA +K        L YPI HG V NWD ME+ W    +N LR  PE
Sbjct:    1 MDSGEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVG------------------RPRHQGIMVGMGQKDSYVGDEAQSKR---GILTLRYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 100          
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACT_CANDC (Actin OS=Candida dubliniensis (strain CD36 / CBS 7987 / NCPF 3949 / NRRL Y-17841) GN=ACT1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.314e-11
Identity = 43/121 (35.54%), Postives = 57/121 (47.11%), Query Frame = 1
Query:  334 MDPTSRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            MD     A+VIDNG+G  K GFAG+  P  + P++V                      + G+M  +   D ++GDEA +K        L YPI HG V NWD ME+ W    +N LR  PE
Sbjct:    1 MDGEEVAALVIDNGSGMCKAGFAGDDAPRAVFPSLVG------------------RPRHQGIMVGMGQKDSYVGDEAQSKR---GILTLRYPIEHGIVSNWDDMEKIWHHTFYNELRVAPE 100          
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACTD_STRPU (Actin, cytoskeletal 2B OS=Strongylocentrotus purpuratus GN=CYIIB PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.314e-11
Identity = 42/114 (36.84%), Postives = 55/114 (48.25%), Query Frame = 1
Query:  355 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            A+VIDNG+G  K GFAG+  P  + P++V                      + GVM  +   D ++GDEA +K        L YPI HG V NWD ME+ W    +N LR  PE
Sbjct:    8 ALVIDNGSGMVKAGFAGDDAPRAVFPSIVG------------------RPRHQGVMVGMGQKDSYVGDEAQSKR---GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 100          
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACTA_PHYPO (Actin, plasmodial isoform OS=Physarum polycephalum GN=ARDA PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.314e-11
Identity = 42/114 (36.84%), Postives = 55/114 (48.25%), Query Frame = 1
Query:  355 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            A+VIDNG+G  K GFAG+  P  + P++V                      + GVM  +   D ++GDEA +K        L YPI HG V NWD ME+ W    +N LR  PE
Sbjct:    8 ALVIDNGSGMCKAGFAGDDAPRAVFPSIVG------------------RPRHTGVMVGMGQKDSYVGDEAQSKR---GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 100          
The following BLAST results are available for this feature:
BLAST of CX295620 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 280
Match NameE-valueIdentityDescription
ACT1_DICDI4.516e-1236.36Major actin OS=Dictyostelium discoideum GN=act1 PE... [more]
ACT_PICPG5.898e-1237.19Actin OS=Pichia pastoris (strain GS115) GN=ACT1 PE... [more]
ACT_CYAME5.898e-1237.84Actin OS=Cyanidioschyzon merolae PE=3 SV=1[more]
ACT1_PLAFX5.898e-1236.84Actin-1 OS=Plasmodium falciparum (isolate HB3) PE=... [more]
ACT1_PLAFO5.898e-1236.84Actin-1 OS=Plasmodium falciparum (isolate NF54) PE... [more]
ACT1_PLAF75.898e-1236.84Actin-1 OS=Plasmodium falciparum (isolate 3D7) GN=... [more]
ACT_ASHGO1.006e-1135.54Actin OS=Ashbya gossypii GN=ACT1 PE=2 SV=1[more]
ACT_CANDC1.314e-1135.54Actin OS=Candida dubliniensis (strain CD36 / CBS 7... [more]
ACTD_STRPU1.314e-1136.84Actin, cytoskeletal 2B OS=Strongylocentrotus purpu... [more]
ACTA_PHYPO1.314e-1136.84Actin, plasmodial isoform OS=Physarum polycephalum... [more]

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Properties
Property NameValue
Genbank descriptionC05074B05SK DroRLeaf1 Citrus clementina cDNA clone C05074B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295620 ID=CX295620; Name=CX295620; organism=Citrus clementina; type=EST; length=704bp
GAGGGGAAACAGAGAGGGAGAAAAAAAAAAGAAAAAAAAAAGAAAGAGGA
AAATGAAAAGACAGTGATAGCAATGATGAAGAAGTTGATGAGAGAGGCTT
ATCATTTCCATTATCGATGTTGTTGTTGAAATGGGTGTTGGATTTTGTAC
CAACTTACAAAGCTGCCGTGCGTTGAGTCGCTCCTTTCACTTGCGATTCA
AGTCTTTCGTATATCACCATCACCAACACTTTCTTCACGATCATGTTCCA
TTGCCTTAACCCTTCTCTCGGATCTCAGTTGCGGATCCCTCGTTACCACC
ACCACCACGATTCTCACCTCCTTTCTCTTTACAATGGACCCCACTTCTCG
TCCTGCCGTCGTCATCGACAACGGCACCGGGTATACTAAGATGGGTTTTG
CGGGTAATGTAGAGCCGTGTTTTATTCTTCCGACTGTAGTAGCTGTAAAC
GAGTCGTTTTTAAATCAATCAAGATCTTCGTCAAAGGCCAATTGGCTTGC
ACAGTACAACGCAGGCGTAATGGCCGACCTTGACTTCTTTATTGGAGATG
AAGCAGTCACAAAATCGCGATCTAGTAGTACCTATAACCTTAGTTATCCT
ATTAGGCATGGTCAGGTTGATAATTGGGATGCTATGGAGAGGTATTGGCA
GCAGTGTATATTTAATTACTTGCGTTGTGATCCAGAGATCACTACTTTCT
GTTG
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