CX295620

Overview
NameCX295620
Unique NameCX295620
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACT7_ORYSJ (Actin-7 OS=Oryza sativa subsp. japonica GN=ACT7 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.314e-11
Identity = 41/113 (36.28%), Postives = 54/113 (47.79%), Query Frame = 1
Query:  358 VVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            +V DNGTG  K GFAG+  P  + P++V                      + GVM  +   D ++GDEA +K        L YPI HG V+NWD ME+ W    +N LR  PE
Sbjct:    9 IVCDNGTGMVKAGFAGDDAPRAVFPSIVG------------------RPRHTGVMVGMGQKDAYVGDEAQSKR---GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPE 100          
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACT7_ORYSI (Actin-7 OS=Oryza sativa subsp. indica GN=ACT7 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.314e-11
Identity = 41/113 (36.28%), Postives = 54/113 (47.79%), Query Frame = 1
Query:  358 VVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            +V DNGTG  K GFAG+  P  + P++V                      + GVM  +   D ++GDEA +K        L YPI HG V+NWD ME+ W    +N LR  PE
Sbjct:    9 IVCDNGTGMVKAGFAGDDAPRAVFPSIVG------------------RPRHTGVMVGMGQKDAYVGDEAQSKR---GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPE 100          
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACT2_TRYBB (Actin B OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.314e-11
Identity = 41/118 (34.75%), Postives = 57/118 (48.31%), Query Frame = 1
Query:  334 MDPTSRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            M    + A+V DNG+G  K GF+G+  P  + P++V   ++   Q+   S             A  + F+GDEA  K        L YPI HG V NWD ME+ W    +N LR +PE
Sbjct:    1 MSDEEQTAIVCDNGSGMVKSGFSGDDAPRHLFPSIVGPPKN--EQAMMGS-------------AKQEMFVGDEAQAKR---GVLALKYPIEHGIVTNWDDMEKVWHHTFYNELRVNPE 100          
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACT2_STRFN (Actin-15B OS=Strongylocentrotus franciscanus PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.314e-11
Identity = 42/114 (36.84%), Postives = 55/114 (48.25%), Query Frame = 1
Query:  355 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            A+VIDNG+G  K GFAG+  P  + P++V                      + GVM  +   D ++GDEA +K        L YPI HG V NWD ME+ W    +N LR  PE
Sbjct:    8 ALVIDNGSGMVKAGFAGDDAPRAVFPSIVG------------------RPRHQGVMVGMGQKDSYVGDEAQSKR---GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 100          
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACT1_TRYBB (Actin A OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.314e-11
Identity = 40/118 (33.90%), Postives = 56/118 (47.46%), Query Frame = 1
Query:  334 MDPTSRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            M    + A+V DNG+G  K GF+G+  P  + P++V   ++      S++K                 F+GDEA  K        L YPI HG V NWD ME+ W    +N LR +PE
Sbjct:    1 MSDEEQTAIVCDNGSGMVKSGFSGDDAPRHVFPSIVGRPKNEQAMMGSANKK---------------LFVGDEAQAKR---GVLALKYPIEHGIVTNWDDMEKVWHHTFYNELRVNPE 100          
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACT1_STRFN (Actin-15A OS=Strongylocentrotus franciscanus PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.314e-11
Identity = 42/114 (36.84%), Postives = 55/114 (48.25%), Query Frame = 1
Query:  355 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            A+VIDNG+G  K GFAG+  P  + P++V                      + GVM  +   D ++GDEA +K        L YPI HG V NWD ME+ W    +N LR  PE
Sbjct:    8 ALVIDNGSGMVKAGFAGDDAPRAVFPSIVG------------------RPRHQGVMVGMGQKDSYVGDEAQSKR---GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 100          
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACT1_HELTB (Actin CyI, cytoplasmic OS=Heliocidaris tuberculata PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.314e-11
Identity = 42/114 (36.84%), Postives = 55/114 (48.25%), Query Frame = 1
Query:  355 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            A+VIDNG+G  K GFAG+  P  + P++V                      + GVM  +   D ++GDEA +K        L YPI HG V NWD ME+ W    +N LR  PE
Sbjct:    8 ALVIDNGSGMVKAGFAGDDAPRAVFPSIVG------------------RPRHQGVMVGMGQKDSYVGDEAQSKR---GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 100          
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACT1_HELER (Actin CyI, cytoplasmic OS=Heliocidaris erythrogramma PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.314e-11
Identity = 42/114 (36.84%), Postives = 55/114 (48.25%), Query Frame = 1
Query:  355 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            A+VIDNG+G  K GFAG+  P  + P++V                      + GVM  +   D ++GDEA +K        L YPI HG V NWD ME+ W    +N LR  PE
Sbjct:    8 ALVIDNGSGMVKAGFAGDDAPRAVFPSIVG------------------RPRHQGVMVGMGQKDSYVGDEAQSKR---GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 100          
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACT1_ACACA (Actin-1 OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.314e-11
Identity = 42/114 (36.84%), Postives = 55/114 (48.25%), Query Frame = 1
Query:  355 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            A+VIDNG+G  K GFAG+  P  + P++V                      + GVM  +   D ++GDEA +K        L YPI HG V NWD ME+ W    +N LR  PE
Sbjct:    7 ALVIDNGSGMCKAGFAGDDAPRAVFPSIVG------------------RPRHTGVMVGMGQKDSYVGDEAQSKR---GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 99          
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACT10_DICDI (Actin-10 OS=Dictyostelium discoideum GN=act10 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.314e-11
Identity = 42/114 (36.84%), Postives = 55/114 (48.25%), Query Frame = 1
Query:  355 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            A+VIDNG+G  K GFAG+  P  + P++V                      + GVM  +   D ++GDEA +K        L YPI HG V NWD ME+ W    +N LR  PE
Sbjct:    8 ALVIDNGSGMCKAGFAGDDAPRAVFPSIVG------------------RPRHTGVMVGMGQKDSYVGDEAQSKR---GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 100          
The following BLAST results are available for this feature:
BLAST of CX295620 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 280
Match NameE-valueIdentityDescription
ACT7_ORYSJ1.314e-1136.28Actin-7 OS=Oryza sativa subsp. japonica GN=ACT7 PE... [more]
ACT7_ORYSI1.314e-1136.28Actin-7 OS=Oryza sativa subsp. indica GN=ACT7 PE=3... [more]
ACT2_TRYBB1.314e-1134.75Actin B OS=Trypanosoma brucei brucei PE=3 SV=1[more]
ACT2_STRFN1.314e-1136.84Actin-15B OS=Strongylocentrotus franciscanus PE=2 ... [more]
ACT1_TRYBB1.314e-1133.90Actin A OS=Trypanosoma brucei brucei PE=3 SV=1[more]
ACT1_STRFN1.314e-1136.84Actin-15A OS=Strongylocentrotus franciscanus PE=3 ... [more]
ACT1_HELTB1.314e-1136.84Actin CyI, cytoplasmic OS=Heliocidaris tuberculata... [more]
ACT1_HELER1.314e-1136.84Actin CyI, cytoplasmic OS=Heliocidaris erythrogram... [more]
ACT1_ACACA1.314e-1136.84Actin-1 OS=Acanthamoeba castellanii PE=3 SV=1[more]
ACT10_DICDI1.314e-1136.84Actin-10 OS=Dictyostelium discoideum GN=act10 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionC05074B05SK DroRLeaf1 Citrus clementina cDNA clone C05074B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295620 ID=CX295620; Name=CX295620; organism=Citrus clementina; type=EST; length=704bp
GAGGGGAAACAGAGAGGGAGAAAAAAAAAAGAAAAAAAAAAGAAAGAGGA
AAATGAAAAGACAGTGATAGCAATGATGAAGAAGTTGATGAGAGAGGCTT
ATCATTTCCATTATCGATGTTGTTGTTGAAATGGGTGTTGGATTTTGTAC
CAACTTACAAAGCTGCCGTGCGTTGAGTCGCTCCTTTCACTTGCGATTCA
AGTCTTTCGTATATCACCATCACCAACACTTTCTTCACGATCATGTTCCA
TTGCCTTAACCCTTCTCTCGGATCTCAGTTGCGGATCCCTCGTTACCACC
ACCACCACGATTCTCACCTCCTTTCTCTTTACAATGGACCCCACTTCTCG
TCCTGCCGTCGTCATCGACAACGGCACCGGGTATACTAAGATGGGTTTTG
CGGGTAATGTAGAGCCGTGTTTTATTCTTCCGACTGTAGTAGCTGTAAAC
GAGTCGTTTTTAAATCAATCAAGATCTTCGTCAAAGGCCAATTGGCTTGC
ACAGTACAACGCAGGCGTAATGGCCGACCTTGACTTCTTTATTGGAGATG
AAGCAGTCACAAAATCGCGATCTAGTAGTACCTATAACCTTAGTTATCCT
ATTAGGCATGGTCAGGTTGATAATTGGGATGCTATGGAGAGGTATTGGCA
GCAGTGTATATTTAATTACTTGCGTTGTGATCCAGAGATCACTACTTTCT
GTTG
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