CX295620

Overview
NameCX295620
Unique NameCX295620
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: FGR_FSVGR (Tyrosine-protein kinase transforming protein Fgr OS=Feline sarcoma virus (strain Gardner-Rasheed) GN=V-FGR PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 42/114 (36.84%), Postives = 55/114 (48.25%), Query Frame = 1 
Query:  355 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            A+VIDNG+G  K GFAG+  P  + P++V                      + GVM  +   D ++GDEA +K        L YPI HG V NWD ME+ W    +N LR  PE
Sbjct:   29 ALVIDNGSGMCKAGFAGDDAPRAVFPSIVG------------------RPRHQGVMVGMGQKDSYVGDEAQSKR---GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 121
[Close]
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACT_SCHPO (Actin OS=Schizosaccharomyces pombe GN=act1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 41/114 (35.96%), Postives = 56/114 (49.12%), Query Frame = 1 
Query:  355 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            A+VIDNG+G  K GFAG+  P  + P++V                      + G+M  +   D ++GDEA +K        L YPI HG V+NWD ME+ W    +N LR  PE
Sbjct:    7 ALVIDNGSGMCKAGFAGDDAPRAVFPSIVG------------------RPRHHGIMVGMGQKDSYVGDEAQSKR---GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPE 99
[Close]
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACT_PHARH (Actin OS=Phaffia rhodozyma PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 42/114 (36.84%), Postives = 55/114 (48.25%), Query Frame = 1 
Query:  355 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            A+VIDNG+G  K GFAG+  P  + P++V                      + GVM  +   D ++GDEA +K        L YPI HG V NWD ME+ W    +N LR  PE
Sbjct:    7 ALVIDNGSGMCKAGFAGDDAPRAVFPSIVG------------------RPRHQGVMVGMGQKDSYVGDEAQSKR---GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 99
[Close]
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACT_ENTHI (Actin OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 41/114 (35.96%), Postives = 56/114 (49.12%), Query Frame = 1 
Query:  355 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            A+V+DNG+G  K GFAG+  P  + P++V                      +  VMA +   D ++GDEA +K        L YPI HG V+NWD ME+ W    +N LR  PE
Sbjct:    8 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVG------------------RPRHVSVMAGMGQKDAYVGDEAQSKR---GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPE 100
[Close]
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACT_CRYNV (Actin OS=Cryptococcus neoformans var. grubii PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 42/114 (36.84%), Postives = 55/114 (48.25%), Query Frame = 1 
Query:  355 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            A+VIDNG+G  K GFAG+  P  + P++V                      + GVM  +   D ++GDEA +K        L YPI HG V NWD ME+ W    +N LR  PE
Sbjct:    7 ALVIDNGSGMCKAGFAGDDAPRAVFPSIVG------------------RPRHQGVMVGMGQKDSYVGDEAQSKR---GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 99
[Close]
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACT_COPC7 (Actin OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=ACT1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 42/114 (36.84%), Postives = 55/114 (48.25%), Query Frame = 1 
Query:  355 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            A+VIDNG+G  K GFAG+  P  + P++V                      + GVM  +   D ++GDEA +K        L YPI HG V NWD ME+ W    +N LR  PE
Sbjct:    7 ALVIDNGSGMCKAGFAGDDAPRAVFPSIVG------------------RPRHQGVMVGMGQKDSYVGDEAQSKR---GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 99
[Close]
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACT_CANAL (Actin OS=Candida albicans GN=ACT1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 42/121 (34.71%), Postives = 57/121 (47.11%), Query Frame = 1 
Query:  334 MDPTSRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            MD     A++IDNG+G  K GFAG+  P  + P++V                      + G+M  +   D ++GDEA +K        L YPI HG V NWD ME+ W    +N LR  PE
Sbjct:    1 MDGEEVAALIIDNGSGMCKAGFAGDDAPRAVFPSLVG------------------RPRHQGIMVGMGQKDSYVGDEAQSKR---GILTLRYPIEHGIVSNWDDMEKIWHHTFYNELRVAPE 100
[Close]
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACT_BRUMA (Actin OS=Brugia malayi PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 42/114 (36.84%), Postives = 55/114 (48.25%), Query Frame = 1 
Query:  355 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            A+VIDNG+G  K GFAG+  P  + P++V                      + GVM  +   D ++GDEA +K        L YPI HG V NWD ME+ W    +N LR  PE
Sbjct:    8 ALVIDNGSGMCKAGFAGDDAPRAVFPSIVG------------------RPRHQGVMVGMGQKDSYVGDEAQSKR---GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 100
[Close]
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACTM_APLCA (Actin, muscle OS=Aplysia californica PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 41/114 (35.96%), Postives = 55/114 (48.25%), Query Frame = 1 
Query:  355 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            A+V+DNG+G  K GFAG+  P  + P++V                      + GVM  +   D ++GDEA +K        L YPI HG V NWD ME+ W    +N LR  PE
Sbjct:    8 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVG------------------RPRHQGVMVGMGQKDSYVGDEAQSKR---GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVPPE 100
[Close]
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACTG_XENLA (Actin, cytoplasmic 2 OS=Xenopus laevis GN=actg1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 42/114 (36.84%), Postives = 55/114 (48.25%), Query Frame = 1 
Query:  355 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            A+VIDNG+G  K GFAG+  P  + P++V                      + GVM  +   D ++GDEA +K        L YPI HG V NWD ME+ W    +N LR  PE
Sbjct:    7 ALVIDNGSGMCKAGFAGDDAPRAVFPSIVG------------------RPRHQGVMVGMGQKDSYVGDEAQSKR---GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 99
The following BLAST results are available for this feature:
BLAST of CX295620 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 280
Match NameE-valueIdentityDescription
FGR_FSVGR1.716e-1136.84Tyrosine-protein kinase transforming protein Fgr O... [more]
ACT_SCHPO1.716e-1135.96Actin OS=Schizosaccharomyces pombe GN=act1 PE=1 SV... [more]
ACT_PHARH1.716e-1136.84Actin OS=Phaffia rhodozyma PE=3 SV=1[more]
ACT_ENTHI1.716e-1135.96Actin OS=Entamoeba histolytica PE=2 SV=1[more]
ACT_CRYNV1.716e-1136.84Actin OS=Cryptococcus neoformans var. grubii PE=3 ... [more]
ACT_COPC71.716e-1136.84Actin OS=Coprinopsis cinerea (strain Okayama-7 / 1... [more]
ACT_CANAL1.716e-1134.71Actin OS=Candida albicans GN=ACT1 PE=3 SV=1[more]
ACT_BRUMA1.716e-1136.84Actin OS=Brugia malayi PE=1 SV=1[more]
ACTM_APLCA1.716e-1135.96Actin, muscle OS=Aplysia californica PE=2 SV=1[more]
ACTG_XENLA1.716e-1136.84Actin, cytoplasmic 2 OS=Xenopus laevis GN=actg1 PE... [more]

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Properties
Property NameValue
Genbank descriptionC05074B05SK DroRLeaf1 Citrus clementina cDNA clone C05074B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295620 ID=CX295620; Name=CX295620; organism=Citrus clementina; type=EST; length=704bp
GAGGGGAAACAGAGAGGGAGAAAAAAAAAAGAAAAAAAAAAGAAAGAGGA
AAATGAAAAGACAGTGATAGCAATGATGAAGAAGTTGATGAGAGAGGCTT
ATCATTTCCATTATCGATGTTGTTGTTGAAATGGGTGTTGGATTTTGTAC
CAACTTACAAAGCTGCCGTGCGTTGAGTCGCTCCTTTCACTTGCGATTCA
AGTCTTTCGTATATCACCATCACCAACACTTTCTTCACGATCATGTTCCA
TTGCCTTAACCCTTCTCTCGGATCTCAGTTGCGGATCCCTCGTTACCACC
ACCACCACGATTCTCACCTCCTTTCTCTTTACAATGGACCCCACTTCTCG
TCCTGCCGTCGTCATCGACAACGGCACCGGGTATACTAAGATGGGTTTTG
CGGGTAATGTAGAGCCGTGTTTTATTCTTCCGACTGTAGTAGCTGTAAAC
GAGTCGTTTTTAAATCAATCAAGATCTTCGTCAAAGGCCAATTGGCTTGC
ACAGTACAACGCAGGCGTAATGGCCGACCTTGACTTCTTTATTGGAGATG
AAGCAGTCACAAAATCGCGATCTAGTAGTACCTATAACCTTAGTTATCCT
ATTAGGCATGGTCAGGTTGATAATTGGGATGCTATGGAGAGGTATTGGCA
GCAGTGTATATTTAATTACTTGCGTTGTGATCCAGAGATCACTACTTTCT
GTTG
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