CX295620

Overview
NameCX295620
Unique NameCX295620
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACT1_SCHMA (Actin-1 OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 42/114 (36.84%), Postives = 55/114 (48.25%), Query Frame = 1 
Query:  355 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            A+VIDNG+G  K GFAG+  P  + P++V                      + GVM  +   D ++GDEA +K        L YPI HG V NWD ME+ W    +N LR  PE
Sbjct:    8 ALVIDNGSGMCKAGFAGDDAPRAVFPSIVG------------------RPRHQGVMVGMGQKDSYVGDEAQSKR---GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 100
[Close]
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACT1_SCHCO (Actin-1 OS=Schizophyllum commune GN=ACT1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 42/114 (36.84%), Postives = 55/114 (48.25%), Query Frame = 1 
Query:  355 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            A+VIDNG+G  K GFAG+  P  + P++V                      + GVM  +   D ++GDEA +K        L YPI HG V NWD ME+ W    +N LR  PE
Sbjct:    7 ALVIDNGSGMCKAGFAGDDAPRAVFPSIVG------------------RPRHQGVMVGMGQKDSYVGDEAQSKR---GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 99
[Close]
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACT1_SACKO (Actin-1 OS=Saccoglossus kowalevskii PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 42/114 (36.84%), Postives = 55/114 (48.25%), Query Frame = 1 
Query:  355 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            A+V+DNG+G  K GFAG+  P  I P++V                      + GVM  +   D ++GDEA +K        L YPI HG V NWD ME+ W    +N LR  PE
Sbjct:    8 ALVVDNGSGMCKAGFAGDDAPRAIFPSIVG------------------RPRHQGVMVGMGQKDSYVGDEAQSKR---GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 100
[Close]
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACT1_PNECA (Actin-1 OS=Pneumocystis carinii PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 41/114 (35.96%), Postives = 55/114 (48.25%), Query Frame = 1 
Query:  355 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            A+VIDNG+G  K GFAG+  P  + P++V                      + G+M  +   D ++GDEA +K        L YPI HG V NWD ME+ W    +N LR  PE
Sbjct:    7 ALVIDNGSGMCKAGFAGDDAPRAVFPSIVG------------------RPRHQGIMVGMGQKDSYVGDEAQSKR---GILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPE 99
[Close]
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACT_YARLI (Actin OS=Yarrowia lipolytica GN=ACT1 PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11
Identity = 42/114 (36.84%), Postives = 55/114 (48.25%), Query Frame = 1 
Query:  355 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            A+VIDNG+G  K GFAG+  P  + P++V                      + GVM  +   D ++GDEA +K        L YPI HG V NWD ME+ W    +N LR  PE
Sbjct:    7 ALVIDNGSGMCKAGFAGDDAPRAVFPSIVG------------------RPRHQGVMVGMGQKDSYVGDEAQSKR---GILTLRYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 99
[Close]
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACT_VOLCA (Actin OS=Volvox carteri PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11
Identity = 42/114 (36.84%), Postives = 54/114 (47.37%), Query Frame = 1 
Query:  355 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            A+V DNG+G  K GFAG+  P  + P++V                      + GVM  +   D ++GDEA +K        L YPI HG V NWD ME+ W    FN LR  PE
Sbjct:    9 ALVCDNGSGMVKAGFAGDDAPRAVFPSIVG------------------RPRHTGVMVGMGQKDSYVGDEAQSKR---GILTLRYPIEHGIVTNWDDMEKIWHHTFFNELRVAPE 101
[Close]
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACT_THELA (Actin OS=Thermomyces lanuginosus PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11
Identity = 41/114 (35.96%), Postives = 56/114 (49.12%), Query Frame = 1 
Query:  355 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            A+VIDNG+G  K GFAG+  P  + P++V                      + G+M  +   D ++GDEA +K       +L YPI HG V NWD ME+ W    +N LR  PE
Sbjct:    7 ALVIDNGSGMCKAGFAGDDAPRAVFPSIVG------------------RPRHHGIMIGMGQKDSYVGDEAQSKR---GVLSLRYPIEHGVVTNWDDMEKIWHHTFYNELRVAPE 99
[Close]
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACT_TAESO (Actin OS=Taenia solium GN=ACT1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11
Identity = 41/114 (35.96%), Postives = 55/114 (48.25%), Query Frame = 1 
Query:  355 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            A+V+DNG+G  K GFAG+  P  + P++V                      + GVM  +   D ++GDEA +K        L YPI HG V NWD ME+ W    +N LR  PE
Sbjct:    8 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVG------------------RPRHQGVMVGMGQKDSYVGDEAQSKR---GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 100
[Close]
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACT_PLAMG (Actin, adductor muscle OS=Placopecten magellanicus PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11
Identity = 41/114 (35.96%), Postives = 55/114 (48.25%), Query Frame = 1 
Query:  355 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            A+V+DNG+G  K GFAG+  P  + P++V                      + GVM  +   D ++GDEA +K        L YPI HG V NWD ME+ W    +N LR  PE
Sbjct:    8 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVG------------------RPRHQGVMVGMGQKDSYVGDEAQSKR---GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 100
[Close]
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ACT_LUMRU (Actin (Fragment) OS=Lumbricus rubellus PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11
Identity = 41/114 (35.96%), Postives = 55/114 (48.25%), Query Frame = 1 
Query:  355 AVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL---DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            A+V+DNG+G  K GFAG+  P  + P++V                      + GVM  +   D ++GDEA +K        L YPI HG V NWD ME+ W    +N LR  PE
Sbjct:    4 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVG------------------RPRHQGVMVGMGQKDSYVGDEAQSKR---GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 96
The following BLAST results are available for this feature:
BLAST of CX295620 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 280
Match NameE-valueIdentityDescription
ACT1_SCHMA1.716e-1136.84Actin-1 OS=Schistosoma mansoni PE=2 SV=1[more]
ACT1_SCHCO1.716e-1136.84Actin-1 OS=Schizophyllum commune GN=ACT1 PE=2 SV=1[more]
ACT1_SACKO1.716e-1136.84Actin-1 OS=Saccoglossus kowalevskii PE=2 SV=1[more]
ACT1_PNECA1.716e-1135.96Actin-1 OS=Pneumocystis carinii PE=2 SV=1[more]
ACT_YARLI2.241e-1136.84Actin OS=Yarrowia lipolytica GN=ACT1 PE=3 SV=2[more]
ACT_VOLCA2.241e-1136.84Actin OS=Volvox carteri PE=3 SV=1[more]
ACT_THELA2.241e-1135.96Actin OS=Thermomyces lanuginosus PE=3 SV=1[more]
ACT_TAESO2.241e-1135.96Actin OS=Taenia solium GN=ACT1 PE=3 SV=1[more]
ACT_PLAMG2.241e-1135.96Actin, adductor muscle OS=Placopecten magellanicus... [more]
ACT_LUMRU2.241e-1135.96Actin (Fragment) OS=Lumbricus rubellus PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC05074B05SK DroRLeaf1 Citrus clementina cDNA clone C05074B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295620 ID=CX295620; Name=CX295620; organism=Citrus clementina; type=EST; length=704bp
GAGGGGAAACAGAGAGGGAGAAAAAAAAAAGAAAAAAAAAAGAAAGAGGA
AAATGAAAAGACAGTGATAGCAATGATGAAGAAGTTGATGAGAGAGGCTT
ATCATTTCCATTATCGATGTTGTTGTTGAAATGGGTGTTGGATTTTGTAC
CAACTTACAAAGCTGCCGTGCGTTGAGTCGCTCCTTTCACTTGCGATTCA
AGTCTTTCGTATATCACCATCACCAACACTTTCTTCACGATCATGTTCCA
TTGCCTTAACCCTTCTCTCGGATCTCAGTTGCGGATCCCTCGTTACCACC
ACCACCACGATTCTCACCTCCTTTCTCTTTACAATGGACCCCACTTCTCG
TCCTGCCGTCGTCATCGACAACGGCACCGGGTATACTAAGATGGGTTTTG
CGGGTAATGTAGAGCCGTGTTTTATTCTTCCGACTGTAGTAGCTGTAAAC
GAGTCGTTTTTAAATCAATCAAGATCTTCGTCAAAGGCCAATTGGCTTGC
ACAGTACAACGCAGGCGTAATGGCCGACCTTGACTTCTTTATTGGAGATG
AAGCAGTCACAAAATCGCGATCTAGTAGTACCTATAACCTTAGTTATCCT
ATTAGGCATGGTCAGGTTGATAATTGGGATGCTATGGAGAGGTATTGGCA
GCAGTGTATATTTAATTACTTGCGTTGTGATCCAGAGATCACTACTTTCT
GTTG
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