CX295628

Overview
NameCX295628
Unique NameCX295628
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295628 vs. ExPASy Swiss-Prot
Match: NAC61_ARATH (Putative NAC domain-containing protein 61 OS=Arabidopsis thaliana GN=NAC061 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.083e-14
Identity = 50/143 (34.97%), Postives = 75/143 (52.45%), Query Frame = 1
Query:  124 GLKLPIGYRFRPTDEELVVHYLKRKVFGLPLPA-SIIPELDVFQSHPLGLPGDMKEKKR------YFFSNIRNESAIANDGKCKIAAGSGYWKPVGKNRQILASGTKQVVGIRKTLIFCEGKRGHETKTQWVMHQYHLVAIAT 531
            G +L +G+RF PT+ EL+ +YL+ ++ G      S+IP LDVF   P  LP    E+ R       FF  +  +   A  G+     GSGYWK  G    +  S   +V+G++KT++F  GK     KT+W M++Y  V  A+
Sbjct:    2 GEELSVGFRFYPTEVELLTYYLRIQLGGGNATIHSLIPILDVFSVEPTQLPNLAGERCRGDAEQWIFF--VPRQEREARGGRPSRTTGSGYWKATGSPGPVF-SPDNRVIGVKKTMVFYTGKAPTGRKTKWKMNEYKAVETAS 141          
BLAST of CX295628 vs. ExPASy Swiss-Prot
Match: NAC5_ARATH (NAC domain-containing protein 5 OS=Arabidopsis thaliana GN=NAC005 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.260e-11
Identity = 46/155 (29.68%), Postives = 73/155 (47.10%), Query Frame = 1
Query:  136 PIGYRFRPTDEELVVHYLKRKVF--GLPLPASIIPELDVFQSHPLGLPGDMKEKKR----YFFSNIRNESAIANDGKCKIAAGSGYWKPVGKNRQIL-ASGTKQVVGIRKTLIFCEGKRGHETKTQWVMHQYHLVAIATNTNLTQPVFKMVIIGD 579
            P+G+RFRPTD E+V  YL+ K           +I  +D+    P  LP   + K R    YFF   R E+      +      SG+WK  G    I+  +G ++ +G ++ L+F   K    +K+ W MH+YH    + N  +T  + K+   G+
Sbjct:    4 PVGFRFRPTDGEIVDIYLRPKNLESNTSHVDEVISTVDICSFDPWDLPSHSRMKTRDQVWYFFG--RKENKYGKGDRQIRKTKSGFWKKTGVTMDIMRKTGDREKIGEKRVLVF---KNHGGSKSDWAMHEYHATFSSPNQIMTYTLCKVKFKGE 153          
The following BLAST results are available for this feature:
BLAST of CX295628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
NAC61_ARATH5.083e-1434.97Putative NAC domain-containing protein 61 OS=Arabi... [more]
NAC5_ARATH5.260e-1129.68NAC domain-containing protein 5 OS=Arabidopsis tha... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05074C01SK DroRLeaf1 Citrus clementina cDNA clone C05074C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295628 ID=CX295628; Name=CX295628; organism=Citrus clementina; type=EST; length=727bp
GATTCGGCCGAGGGGATTGTTACATTTTCTTTGCTTTGATTTGGTCCATC
ATCAGTTCAGTTTGAGAGAGGGATTTATACATATATAAATATGGAGAAAC
AAAACAACTTCGTTGTGAATGGTGGGTTAAAGCTGCCTATTGGGTATAGG
TTTCGCCCCACAGATGAAGAGCTTGTGGTTCATTACTTGAAGCGTAAGGT
GTTTGGCTTGCCATTGCCTGCTTCCATTATTCCTGAGCTTGATGTGTTTC
AGTCTCATCCTCTGGGTTTGCCAGGTGATATGAAGGAGAAGAAGAGGTAT
TTTTTTAGCAATATTAGAAATGAGAGTGCGATTGCTAATGACGGCAAATG
CAAAATAGCTGCTGGTTCTGGTTACTGGAAACCTGTTGGCAAAAATAGGC
AAATTTTGGCTTCTGGGACTAAGCAAGTAGTTGGAATAAGAAAGACTCTG
ATTTTCTGCGAAGGCAAGCGCGGCCATGAGACCAAAACTCAATGGGTGAT
GCATCAATATCACCTTGTGGCCATTGCAACAAATACCAACTTAACCCAGC
CGGTATTTAAGATGGTGATCATAGGAGATTGGGTTGTGTATCGCATATTT
CAAAGGAAGAAAAAACCTAAAAAGCGTGGAGTTGTTTCTTCTAATAATCT
CAATATCACTAAGAACAGCCACAAAAATCAGCTGCAGGTTATTGATTTTA
GTGTTATTGAAGCTGATCAGACTGATT
back to top