CX295634

Overview
NameCX295634
Unique NameCX295634
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295634 vs. ExPASy Swiss-Prot
Match: PYGM_MOUSE (Glycogen phosphorylase, muscle form OS=Mus musculus GN=Pygm PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 4.884e-14
Identity = 39/104 (37.50%), Postives = 60/104 (57.69%), Query Frame = 1
Query:  358 SAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKD 669
            S +  N + H+ ++         P   +FA A +VRD L+ +W  T  H+ + DPK+ YYLS+EF  GRTL N + +L ++NA  +A   LG  +EE+ E E+D
Sbjct:   26 SELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQQHYYEKDPKRIYYLSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEED 129          
BLAST of CX295634 vs. ExPASy Swiss-Prot
Match: PYGB_PONAB (Glycogen phosphorylase, brain form OS=Pongo abelii GN=PYGB PE=2 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 6.379e-14
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = 1
Query:  427 PEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKD 669
            P    FA A +VRD L+ +W  T  H+ + DPK+ YYLS+EF  GRTL N + +L +QNA  +A+  LG  LEE+ E E+D
Sbjct:   49 PRDYLFALAHTVRDHLVGRWIRTQQHYYERDPKRIYYLSLEFYMGRTLQNTMVNLGLQNACDEAIYQLGLDLEELEEIEED 129          
BLAST of CX295634 vs. ExPASy Swiss-Prot
Match: PYGM_RABIT (Glycogen phosphorylase, muscle form OS=Oryctolagus cuniculus GN=PYGM PE=1 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 1.088e-13
Identity = 38/102 (37.25%), Postives = 59/102 (57.84%), Query Frame = 1
Query:  364 IASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKD 669
            +  N + H+ ++         P   +FA A +VRD L+ +W  T  H+ + DPK+ YYLS+EF  GRTL N + +L ++NA  +A   LG  +EE+ E E+D
Sbjct:   28 LKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQQHYYEKDPKRIYYLSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEED 129          
BLAST of CX295634 vs. ExPASy Swiss-Prot
Match: PYGM_MACFA (Glycogen phosphorylase, muscle form OS=Macaca fascicularis GN=PYGM PE=2 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 1.088e-13
Identity = 38/102 (37.25%), Postives = 59/102 (57.84%), Query Frame = 1
Query:  364 IASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKD 669
            +  N + H+ ++         P   +FA A +VRD L+ +W  T  H+ + DPK+ YYLS+EF  GRTL N + +L ++NA  +A   LG  +EE+ E E+D
Sbjct:   28 LKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQQHYYEKDPKRIYYLSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEED 129          
BLAST of CX295634 vs. ExPASy Swiss-Prot
Match: PYGM_HUMAN (Glycogen phosphorylase, muscle form OS=Homo sapiens GN=PYGM PE=1 SV=6)

HSP 1 Score: 77.0258 bits (188), Expect = 1.088e-13
Identity = 38/102 (37.25%), Postives = 59/102 (57.84%), Query Frame = 1
Query:  364 IASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKD 669
            +  N + H+ ++         P   +FA A +VRD L+ +W  T  H+ + DPK+ YYLS+EF  GRTL N + +L ++NA  +A   LG  +EE+ E E+D
Sbjct:   28 LKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQQHYYEKDPKRIYYLSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEED 129          
BLAST of CX295634 vs. ExPASy Swiss-Prot
Match: PYGB_RAT (Glycogen phosphorylase, brain form (Fragment) OS=Rattus norvegicus GN=Pygb PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.421e-13
Identity = 38/81 (46.91%), Postives = 51/81 (62.96%), Query Frame = 1
Query:  427 PEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKD 669
            P   FFA A +VRD L+ +W  T  H+ + DPK+ YYLS+EF  GRTL N + +L +Q A  +A   LG  LEE+ E E+D
Sbjct:   49 PRDYFFALAHTVRDHLVGRWIRTQQHYYERDPKRIYYLSLEFYMGRTLQNTMVNLGLQTACDEATYQLGLDLEELEEIEED 129          
BLAST of CX295634 vs. ExPASy Swiss-Prot
Match: PYGB_MOUSE (Glycogen phosphorylase, brain form OS=Mus musculus GN=Pygb PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.421e-13
Identity = 38/81 (46.91%), Postives = 51/81 (62.96%), Query Frame = 1
Query:  427 PEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKD 669
            P   FFA A +VRD L+ +W  T  H+ + DPK+ YYLS+EF  GRTL N + +L +Q A  +A   LG  LEE+ E E+D
Sbjct:   49 PRDYFFALAHTVRDHLVGRWIRTQQHYYERDPKRIYYLSLEFYMGRTLQNTMVNLGLQTACDEATYQLGLDLEELEEIEED 129          
BLAST of CX295634 vs. ExPASy Swiss-Prot
Match: PYGM_RAT (Glycogen phosphorylase, muscle form OS=Rattus norvegicus GN=Pygm PE=2 SV=5)

HSP 1 Score: 75.485 bits (184), Expect = 3.166e-13
Identity = 38/104 (36.54%), Postives = 58/104 (55.77%), Query Frame = 1
Query:  358 SAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKD 669
            S +  N + H+ ++         P   +FA A +VRD L+ +W  T  H+   DPK+ YYLS+E   GRTL N + +L ++NA  +A   LG  +EE+ E E+D
Sbjct:   26 SDLKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVDRWIRTQQHYYAKDPKRIYYLSLELYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEED 129          
BLAST of CX295634 vs. ExPASy Swiss-Prot
Match: PYGM_SHEEP (Glycogen phosphorylase, muscle form OS=Ovis aries GN=PYGM PE=2 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 4.135e-13
Identity = 38/102 (37.25%), Postives = 59/102 (57.84%), Query Frame = 1
Query:  364 IASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKD 669
            +  N + H+ ++         P   +FA A +VRD L+ +W  T  H+ + DPK+ YYLS+EF  GRTL N + +L ++NA  +A   LG  +EE+ E E+D
Sbjct:   28 LKKNFNRHLHFTLVKDRNVATPRDYYFALAYTVRDHLVGRWIRTQQHYYEKDPKRIYYLSLEFYIGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEED 129          
BLAST of CX295634 vs. ExPASy Swiss-Prot
Match: PYGM_BOVIN (Glycogen phosphorylase, muscle form OS=Bos taurus GN=PYGM PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 4.135e-13
Identity = 38/102 (37.25%), Postives = 59/102 (57.84%), Query Frame = 1
Query:  364 IASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKD 669
            +  N + H+ ++         P   +FA A +VRD L+ +W  T  H+ + DPK+ YYLS+EF  GRTL N + +L ++NA  +A   LG  +EE+ E E+D
Sbjct:   28 LKKNFNRHLHFTLVKDRNVATPRDYYFALAYTVRDHLVGRWIRTQQHYYEKDPKRIYYLSLEFYIGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEED 129          
The following BLAST results are available for this feature:
BLAST of CX295634 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
PYGM_MOUSE4.884e-1437.50Glycogen phosphorylase, muscle form OS=Mus musculu... [more]
PYGB_PONAB6.379e-1446.91Glycogen phosphorylase, brain form OS=Pongo abelii... [more]
PYGM_RABIT1.088e-1337.25Glycogen phosphorylase, muscle form OS=Oryctolagus... [more]
PYGM_MACFA1.088e-1337.25Glycogen phosphorylase, muscle form OS=Macaca fasc... [more]
PYGM_HUMAN1.088e-1337.25Glycogen phosphorylase, muscle form OS=Homo sapien... [more]
PYGB_RAT1.421e-1346.91Glycogen phosphorylase, brain form (Fragment) OS=R... [more]
PYGB_MOUSE1.421e-1346.91Glycogen phosphorylase, brain form OS=Mus musculus... [more]
PYGM_RAT3.166e-1336.54Glycogen phosphorylase, muscle form OS=Rattus norv... [more]
PYGM_SHEEP4.135e-1337.25Glycogen phosphorylase, muscle form OS=Ovis aries ... [more]
PYGM_BOVIN4.135e-1337.25Glycogen phosphorylase, muscle form OS=Bos taurus ... [more]

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Properties
Property NameValue
Genbank descriptionC05074C07SK DroRLeaf1 Citrus clementina cDNA clone C05074C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295634 ID=CX295634; Name=CX295634; organism=Citrus clementina; type=EST; length=712bp
GATTCGGCCGAGGCCTCGCTCTCGTAGCAATGACCTCTATTCACTCACTC
ACTCTCGTGCGATCGTGATCGTCAGTCTCTGATATTTTTTTTCCCTTTAG
AAACACAATCGCTTCAAAGCTCTTGTTCGCTTCCTCTTCTTAGCATATTC
TTTCTCACTCCAATACTTTCTTTATAACAATATCTTCTCTTACACTTCAT
TTACGTTTTAAACTGCTTGCCGTTTCGTGTAGCTTCTGAAACAAGCAAGT
AATTTAATTTGTGGAATCAAATGGCGGATGCGAAAGCAAACGGAAAGAAT
GAGGCGGCCAAACTGGCGAAAATTCCGGCGGCTGCGAATCCATTGGCTAA
TGAACCATCGGCGATTGCATCAAATATAAGTTACCACGTGCAGTACAGTC
CTCATTTCTCGCCGACTAAGTTCGAGCCGGAGCAAGCTTTCTTTGCCACG
GCGGAGAGTGTCCGCGATCGTCTTATTCAACAATGGAATGAGACATACCA
CCATTTTAATAAAGTTGATCCGAAGCAAACATACTACCTATCAATGGAAT
TTCTTCAAGGAAGGACTTTGACTAATGCAATTGGCAGTTTGGACATTCAG
AATGCATATGCTGATGCTTTAAATAATTTGGGGCATGTCCTTGAGGAGAT
AGCTGAACAGGAAAAAGATGCTGCACTAGGAAATGGTGGGCTGGGCAGGC
TAGCTTCATGCT
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