CX295634

Overview
NameCX295634
Unique NameCX295634
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295634 vs. ExPASy Swiss-Prot
Match: PYGL_RAT (Glycogen phosphorylase, liver form OS=Rattus norvegicus GN=Pygl PE=1 SV=5)

HSP 1 Score: 74.3294 bits (181), Expect = 7.053e-13
Identity = 36/81 (44.44%), Postives = 51/81 (62.96%), Query Frame = 1
Query:  427 PEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKD 669
            P   +FA A +VRD L+ +W  T  H+    PK+ YYLS+EF  GRTL N + +L +QNA  +A+  LG  +EE+ E E+D
Sbjct:   49 PRDYYFALAHTVRDHLVGRWIRTQQHYYDKCPKRVYYLSLEFYMGRTLQNTMINLGLQNACDEAIYQLGLDMEELEEIEED 129          
BLAST of CX295634 vs. ExPASy Swiss-Prot
Match: PYGL_MOUSE (Glycogen phosphorylase, liver form OS=Mus musculus GN=Pygl PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 7.053e-13
Identity = 36/81 (44.44%), Postives = 51/81 (62.96%), Query Frame = 1
Query:  427 PEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKD 669
            P   +FA A +VRD L+ +W  T  H+    PK+ YYLS+EF  GRTL N + +L +QNA  +A+  LG  +EE+ E E+D
Sbjct:   49 PRDYYFALAHTVRDHLVGRWIRTQQHYYDKCPKRVYYLSLEFYMGRTLQNTMINLGLQNACDEAIYQLGLDMEELEEIEED 129          
BLAST of CX295634 vs. ExPASy Swiss-Prot
Match: PYGL_SHEEP (Glycogen phosphorylase, liver form OS=Ovis aries GN=PYGL PE=2 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 9.211e-13
Identity = 36/81 (44.44%), Postives = 52/81 (64.20%), Query Frame = 1
Query:  427 PEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKD 669
            P   FFA A +VRD L+ +W  T  ++ +  PK+ YYLS+EF  GRTL N + +L +QNA  +A+  LG  +EE+ E E+D
Sbjct:   49 PRDYFFALAHTVRDHLVGRWIRTQQYYYEKCPKRVYYLSLEFYMGRTLQNTMINLGLQNACDEAIYQLGLDMEELEEIEED 129          
BLAST of CX295634 vs. ExPASy Swiss-Prot
Match: PYGL_BOVIN (Glycogen phosphorylase, liver form OS=Bos taurus GN=PYGL PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.211e-13
Identity = 36/81 (44.44%), Postives = 52/81 (64.20%), Query Frame = 1
Query:  427 PEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKD 669
            P   FFA A +VRD L+ +W  T  ++ +  PK+ YYLS+EF  GRTL N + +L +QNA  +A+  LG  +EE+ E E+D
Sbjct:   49 PRDYFFALAHTVRDHLVGRWIRTQQYYYEKCPKRVYYLSLEFYMGRTLQNTMINLGLQNACDEAIYQLGLDMEELEEIEED 129          
BLAST of CX295634 vs. ExPASy Swiss-Prot
Match: PYGL_HUMAN (Glycogen phosphorylase, liver form OS=Homo sapiens GN=PYGL PE=1 SV=4)

HSP 1 Score: 72.4034 bits (176), Expect = 2.680e-12
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 1
Query:  439 FFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKD 669
            +FA A +VRD L+ +W  T  H+    PK+ YYLS+EF  GRTL N + +L +QNA  +A+  LG  +EE+ E E+D
Sbjct:   53 YFALAHTVRDHLVGRWIRTQQHYYDKCPKRVYYLSLEFYMGRTLQNTMINLGLQNACDEAIYQLGLDIEELEEIEED 129          
BLAST of CX295634 vs. ExPASy Swiss-Prot
Match: PHS2_DICDI (Glycogen phosphorylase 2 OS=Dictyostelium discoideum GN=glpD PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.680e-12
Identity = 35/95 (36.84%), Postives = 61/95 (64.21%), Query Frame = 1
Query:  385 HVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKD 669
            HV+Y+   + ++     +F A +   RDRLI++W +T   F + + KQ  Y+S+EFL GR+L N++ +L +   Y+DAL +LG  LE++ ++E+D
Sbjct:  121 HVEYTLAQTKSECTDFSSFQALSYCTRDRLIERWKDTKLFFKQKNVKQVNYMSLEFLLGRSLQNSLSALGLVGKYSDALMDLGFKLEDLYDEERD 215          
BLAST of CX295634 vs. ExPASy Swiss-Prot
Match: PYG_DROME (Glycogen phosphorylase OS=Drosophila melanogaster GN=GlyP PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.500e-12
Identity = 34/102 (33.33%), Postives = 58/102 (56.86%), Query Frame = 1
Query:  364 IASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKD 669
            +  N + H+ Y+             +FA A +V+D ++ +W  T  H+ + DPK+ YYLS+E+  GR+LTN + +L IQ+   +A+  LG  +E + E E+D
Sbjct:   28 VKKNFNRHLHYTLVKDRNVSTLRDYYFALANTVKDNMVGRWIRTQQHYYEKDPKRVYYLSLEYYMGRSLTNTMINLGIQSECEEAMYQLGLDIENLEEMEED 129          
BLAST of CX295634 vs. ExPASy Swiss-Prot
Match: PYGB_SHEEP (Glycogen phosphorylase, brain form OS=Ovis aries GN=PYGB PE=2 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 4.571e-12
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 1
Query:  439 FFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKD 669
            + A A +VRD L+ +W  T   + + DPK+ YYLS+EF  GRTL N + +L +QNA  +A+  LG  LEE+ E E+D
Sbjct:   53 YLALAHTVRDHLVGRWIRTQQRYYERDPKRIYYLSLEFYMGRTLQNTMVNLGLQNACDEAIYQLGLDLEELEEIEED 129          
BLAST of CX295634 vs. ExPASy Swiss-Prot
Match: PYGB_BOVIN (Glycogen phosphorylase, brain form OS=Bos taurus GN=PYGB PE=2 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 4.571e-12
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 1
Query:  439 FFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKD 669
            + A A +VRD L+ +W  T   + + DPK+ YYLS+EF  GRTL N + +L +QNA  +A+  LG  LEE+ E E+D
Sbjct:   53 YLALAHTVRDHLVGRWIRTQQRYYERDPKRIYYLSLEFYMGRTLQNTMVNLGLQNACDEAIYQLGLDLEELEEIEED 129          
The following BLAST results are available for this feature:
BLAST of CX295634 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
PYGL_RAT7.053e-1344.44Glycogen phosphorylase, liver form OS=Rattus norve... [more]
PYGL_MOUSE7.053e-1344.44Glycogen phosphorylase, liver form OS=Mus musculus... [more]
PYGL_SHEEP9.211e-1344.44Glycogen phosphorylase, liver form OS=Ovis aries G... [more]
PYGL_BOVIN9.211e-1344.44Glycogen phosphorylase, liver form OS=Bos taurus G... [more]
PYGL_HUMAN2.680e-1245.45Glycogen phosphorylase, liver form OS=Homo sapiens... [more]
PHS2_DICDI2.680e-1236.84Glycogen phosphorylase 2 OS=Dictyostelium discoide... [more]
PYG_DROME3.500e-1233.33Glycogen phosphorylase OS=Drosophila melanogaster ... [more]
PYGB_SHEEP4.571e-1245.45Glycogen phosphorylase, brain form OS=Ovis aries G... [more]
PYGB_BOVIN4.571e-1245.45Glycogen phosphorylase, brain form OS=Bos taurus G... [more]

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Properties
Property NameValue
Genbank descriptionC05074C07SK DroRLeaf1 Citrus clementina cDNA clone C05074C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295634 ID=CX295634; Name=CX295634; organism=Citrus clementina; type=EST; length=712bp
GATTCGGCCGAGGCCTCGCTCTCGTAGCAATGACCTCTATTCACTCACTC
ACTCTCGTGCGATCGTGATCGTCAGTCTCTGATATTTTTTTTCCCTTTAG
AAACACAATCGCTTCAAAGCTCTTGTTCGCTTCCTCTTCTTAGCATATTC
TTTCTCACTCCAATACTTTCTTTATAACAATATCTTCTCTTACACTTCAT
TTACGTTTTAAACTGCTTGCCGTTTCGTGTAGCTTCTGAAACAAGCAAGT
AATTTAATTTGTGGAATCAAATGGCGGATGCGAAAGCAAACGGAAAGAAT
GAGGCGGCCAAACTGGCGAAAATTCCGGCGGCTGCGAATCCATTGGCTAA
TGAACCATCGGCGATTGCATCAAATATAAGTTACCACGTGCAGTACAGTC
CTCATTTCTCGCCGACTAAGTTCGAGCCGGAGCAAGCTTTCTTTGCCACG
GCGGAGAGTGTCCGCGATCGTCTTATTCAACAATGGAATGAGACATACCA
CCATTTTAATAAAGTTGATCCGAAGCAAACATACTACCTATCAATGGAAT
TTCTTCAAGGAAGGACTTTGACTAATGCAATTGGCAGTTTGGACATTCAG
AATGCATATGCTGATGCTTTAAATAATTTGGGGCATGTCCTTGAGGAGAT
AGCTGAACAGGAAAAAGATGCTGCACTAGGAAATGGTGGGCTGGGCAGGC
TAGCTTCATGCT
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