CX295636

Overview
NameCX295636
Unique NameCX295636
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length759
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: Y2105_DICDI (Probable protein phosphatase DDB_G0282105 OS=Dictyostelium discoideum GN=DDB_G0282105 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.743e-11
Identity = 41/117 (35.04%), Postives = 68/117 (58.12%), Query Frame = 1
Query:  187 LIVSNCGDSRAVLCRNGVAVPLSNDHKPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPY---VISEPEVTVTE-RTAEDECLILASDGLWDVVSNETACSVVRTCF 525
            L V N GDS A LCR   ++ L+ DHK + P E  RI+  G  +   D    +  +A+SR++G++++K     +IS P ++     T +D+ +I+ASDGLWDV++ + A   V + +
Sbjct:  810 LQVGNVGDSSAFLCRGNESIELTFDHKANDPSEKQRIKDQG--IPVSDNQTRINGVAVSRSLGNHFIKEQNIGMISTPHISNRYLLTPQDKFVIIASDGLWDVINGKDAIEKVSSLY 924          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: P2C72_ORYSJ (Probable protein phosphatase 2C 72 OS=Oryza sativa subsp. japonica GN=Os10g0544900 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.743e-11
Identity = 51/161 (31.68%), Postives = 76/161 (47.20%), Query Frame = 1
Query:  130 PQCDAVGSXXXXXXXXPGKLIVSNCGDSRAVLCR------NGVAVPLSNDHKPDRPDELLRIEAAGGR-----VIYWDGPRVLGVLAMSRAIGDNYLK---------------------PYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVR 516
            PQ  AVGS         G L ++N GDSRAVL R        +A+ LS +H     +    ++AA        V+  +  RV G++ ++R+IGD YLK                     P + SEP + V +    D+ +I ASDGLW+ +SN+ A  +V+
Sbjct:  145 PQLAAVGSCCLVGVICAGNLYIANLGDSRAVLGRLVKGTGEVLAMQLSAEHNASFEEVRRELQAAHPDDPHIVVLKHNVWRVKGIIQITRSIGDVYLKKPEFNREPLHSKFRLQETFRRPLLSSEPAIVVHQLQTTDQFIIFASDGLWEHISNQEAVDLVQ 305          
The following BLAST results are available for this feature:
BLAST of CX295636 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
Y2105_DICDI9.743e-1135.04Probable protein phosphatase DDB_G0282105 OS=Dicty... [more]
P2C72_ORYSJ9.743e-1131.68Probable protein phosphatase 2C 72 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionC05074C09SK DroRLeaf1 Citrus clementina cDNA clone C05074C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295636 ID=CX295636; Name=CX295636; organism=Citrus clementina; type=EST; length=759bp
AGGATTCGGCCGAGGGAATCCGTGAAGTGGAAGCAGACAATGCAGGCGAG
CTTTGGGAAGATGGATAAGGAGGTGCAAGATTGGAGTGTGAGTTCCAAGA
TCTCTAACTGCCGCTGCGAGTTACAGACTCCGCAGTGCGACGCCGTTGGA
TCTACCGCCGTCGTTGCTGTCGTCACTCCTGGAAAGCTTATCGTCTCTAA
CTGCGGCGACTCTCGTGCTGTGCTCTGCCGAAACGGCGTCGCGGTTCCTC
TGTCCAACGATCATAAACCTGATCGCCCGGATGAGTTGCTTAGAATCGAA
GCCGCCGGCGGCCGTGTGATTTACTGGGACGGTCCGAGAGTGCTTGGCGT
TCTCGCGATGTCGAGAGCGATCGGAGACAATTACTTAAAGCCGTATGTGA
TATCGGAGCCGGAGGTGACCGTGACTGAGCGTACGGCGGAGGATGAGTGT
TTGATTCTGGCGAGCGATGGGTTATGGGACGTGGTGTCGAACGAGACGGC
GTGCAGCGTGGTGCGCACGTGTTTCCGAGCTCAGAAGGCGGCGGCTGCAG
CTTCACCACCCGGATCGCCGGGGAGCGAGGTGGCAGTGTCTGGTCAAAGC
TCTGACAAAGCTTGCTTGGACGCATCAATTTTGTTGACCAAGCTGGCCTT
GGCTAGGCGGAGTTCGGATAATGTCAGCGTTGTGGTGGTCGATTTAGGAG
GAATCAAGTCAAAGCAGGGATTAGTAGTAATTAAATGAGTATATATATAT
ATACGCAAT
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