CX295636

Overview
NameCX295636
Unique NameCX295636
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length759
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: P2C42_ORYSJ (Probable protein phosphatase 2C 42 OS=Oryza sativa subsp. japonica GN=Os04g0500900 PE=2 SV=4)

HSP 1 Score: 92.4337 bits (228), Expect = 2.828e-18
Identity = 52/121 (42.98%), Postives = 74/121 (61.16%), Query Frame = 1
Query:  184 KLIVSNCGDSRAVLCRNGVAVPLSNDHKPDRPDELLRIEAAGGRVIYWDGP-RVLGVLAMSRAIGD------NYLKP---YVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVR 516
            +++V N GD+R V+ RNG A+ LSNDHKP+ P+E  RI AAGG V +  G  RV   +A+SRAIGD        L+P    +   PE+   + T + E L++A DG+WDV++N+     VR
Sbjct:  163 QIVVGNAGDARCVISRNGQAIALSNDHKPNFPEETQRIVAAGGSVSFSRGSHRVNNGIAVSRAIGDLSYKNNKKLRPEQQLLTCSPEIRADQLTDDTEFLVIACDGVWDVLANQAVVDFVR 283          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: P2C47_ORYSJ (Probable protein phosphatase 2C 47 OS=Oryza sativa subsp. japonica GN=Os05g0134200 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.824e-18
Identity = 51/121 (42.15%), Postives = 78/121 (64.46%), Query Frame = 1
Query:  184 KLIVSNCGDSRAVLCRNGVAVPLSNDHKPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLK------PYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVRTCFR 528
            +L+V+N GD RAVLCR GVA+ +S DH+ +  +E  R+ A+GG   Y +   + GVL+++RA+GD  +K        +I+EPE   T  T +DE LI+  DG+WDV++++ A S+VR   R
Sbjct:  197 QLLVANAGDCRAVLCRRGVAMEMSRDHRANYAEECERVAASGG---YIEDGYLNGVLSVTRALGDWDMKMPDGSISPLIAEPEFRQTMLTEDDEFLIMGCDGIWDVMTSQHAVSIVRRGLR 314          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: P2C77_ORYSJ (Probable protein phosphatase 2C 77 OS=Oryza sativa subsp. japonica GN=Os12g0198200 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.300e-18
Identity = 59/119 (49.58%), Postives = 70/119 (58.82%), Query Frame = 1
Query:  181 GKLIVSNCGDSRAVL-CRNGVAVPLSNDHKPDRPDELLRIEAAGGRVI-----YWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTAEDEC--LILASDGLWDVVSNETACSVV 513
            G+L VSN GD RAVL  R GVA  L++DH P R DE LRIE+ GG V       W   RV   LA+SRA GD  +K +V  EPE       A+ +C  L+LASDGLW  VSN+ A   V
Sbjct:  260 GELYVSNVGDCRAVLGSRGGVATALTSDHTPGREDERLRIESTGGYVSCGGSGVW---RVQDSLAVSRAFGDAGVKQWVTCEPETARVSLAADGDCRFLVLASDGLWCKVSNQEAVDAV 375          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: P2C74_ORYSJ (Probable protein phosphatase 2C 74 OS=Oryza sativa subsp. japonica GN=Os11g0242200 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.300e-18
Identity = 54/114 (47.37%), Postives = 72/114 (63.16%), Query Frame = 1
Query:  181 GKLIVSNCGDSRAVLCRNGVAVPLSNDHKPDRPDELLRIEAAGGRVIYWDGP--RVLGVLAMSRAIGDNYLKPYVISEPEVTVTERT-AEDECLILASDGLWDVVSNETACSVV 513
            G L V+N GD RAV+ R+G A  L++DH P R DE  RIE++GG V        RV   LA++R+ GD  LK +V++EPEV+ T    A  E L++ASDGLW+ VSN+ A   V
Sbjct:  245 GDLYVANLGDCRAVISRHGAAAALTSDHTPARDDERSRIESSGGYVSCGSNGVWRVQDCLAVTRSFGDGGLKRWVVAEPEVSRTPLAGAGCEFLVIASDGLWNKVSNQEAVDAV 358          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: P2C02_ORYSJ (Probable protein phosphatase 2C 2 OS=Oryza sativa subsp. japonica GN=Os01g0295700 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.300e-18
Identity = 53/121 (43.80%), Postives = 75/121 (61.98%), Query Frame = 1
Query:  184 KLIVSNCGDSRAVLCRNGVAVPLSNDHKPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLK------PYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVRTCFR 528
            +L+V+N GD RAVLCR GVAV +S DH+P    E  RI   GG   Y +   + GVL+++RA+GD  +K        +I+EPE   T  T +DE LI+  DG+WDV+S++ A ++VR   R
Sbjct:  190 QLLVANAGDCRAVLCRKGVAVEMSRDHRPTYDAEHERITECGG---YIEDGYLNGVLSVTRALGDWDMKMPQGSRSPLIAEPEFQQTTLTEDDEFLIIGCDGIWDVMSSQHAVTIVRKGLR 307          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: PPMBL_HUMAN (Probable protein phosphatase 1B-like OS=Homo sapiens PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.404e-17
Identity = 58/142 (40.85%), Postives = 74/142 (52.11%), Query Frame = 1
Query:  130 PQCDAVGSXXXXXXXXPGKLIVSNCGDSRAVLCRNGVAVPLSNDHKPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLK---------PYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVRTCFR 528
            P+ +  G         P  L +++CGDSRAVL R G     + DH+P RP E  RI AAGG +      RV G LA+SRA+GD   K           V +EPEV    R AEDE ++LASDG+WD VS      +V +  R
Sbjct:  156 PRVETGGCTAVVLLVSPRFLYLAHCGDSRAVLSRAGAVAFSTEDHRPLRPRERERIHAAGGTI---RRRRVEGSLAVSRALGDFTYKEAPGRPPELQLVSAEPEVAALARQAEDEFMLLASDGVWDTVSGAALAGLVASRLR 294          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: PPM1A_BOVIN (Protein phosphatase 1A OS=Bos taurus GN=PPM1A PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.404e-17
Identity = 59/137 (43.07%), Postives = 71/137 (51.82%), Query Frame = 1
Query:  139 DAVGSXXXXXXXXPGKLIVSNCGDSRAVLCRNGVAVPLSNDHKPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLK---------PYVISEPEVTVTERTAE-DECLILASDGLWDVVSNETACSVVRT 519
            D  GS        P      NCGDSR +LCRN      + DHKP  P E  RI+ AGG V+     RV G LA+SRA+GD   K           V  EPEV   ER+ E D+ +ILA DG+WDV+ NE  C  VR+
Sbjct:  123 DRSGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVYFFTQDHKPSNPLEKERIQNAGGSVMI---QRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRS 256          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: PP2C1_CAEEL (Probable protein phosphatase 2C F42G9.1 OS=Caenorhabditis elegans GN=F42G9.1 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.404e-17
Identity = 52/120 (43.33%), Postives = 72/120 (60.00%), Query Frame = 1
Query:  184 KLIVSNCGDSRAVLCRNGVAVPLSNDHKPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLK---------PYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVR 516
            K+IV+N GDSRAVLCRNG AV LS DHKP+   E  RI AAGG++   +  RV G L +SRA GD+  K           + + P+V +   T EDE +++A DG+W+ + ++     VR
Sbjct:  328 KVIVANAGDSRAVLCRNGKAVDLSVDHKPEDEVETNRIHAAGGQI---EDGRVNGGLNLSRAFGDHAYKKNQELGLKEQMITALPDVKIEALTPEDEFIVVACDGIWNSMESQQVVDFVR 444          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: PP2C1_SCHPO (Protein phosphatase 2C homolog 1 OS=Schizosaccharomyces pombe GN=ptc1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.833e-17
Identity = 51/111 (45.95%), Postives = 67/111 (60.36%), Query Frame = 1
Query:  187 LIVSNCGDSRAVLCRNGVAVPLSNDHKPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTE-RTAEDECLILASDGLWDVVSNETACSVVR 516
            L  +N GD+R VLCR+G A+ LS DHK    +E  R+   GG ++     R+ GVLA++RA+GD YLK  V + P  T T      DE  I+A DGLWDVVS++ A   VR
Sbjct:  184 LYTANAGDARIVLCRDGKAIRLSYDHKGSDANESRRVTQLGGLMVQ---NRINGVLAVTRALGDTYLKELVSAHPFTTETRIWNGHDEFFIIACDGLWDVVSDQEAVDFVR 291          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: PPM1A_RAT (Protein phosphatase 1A OS=Rattus norvegicus GN=Ppm1a PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.394e-17
Identity = 59/137 (43.07%), Postives = 71/137 (51.82%), Query Frame = 1
Query:  139 DAVGSXXXXXXXXPGKLIVSNCGDSRAVLCRNGVAVPLSNDHKPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLK---------PYVISEPEVTVTERTAE-DECLILASDGLWDVVSNETACSVVRT 519
            D  GS        P      NCGDSR +LCRN      + DHKP  P E  RI+ AGG V+     RV G LA+SRA+GD   K           V  EPEV   ER+ E D+ +ILA DG+WDV+ NE  C  VR+
Sbjct:  123 DRSGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFFTQDHKPSNPLEKERIQNAGGSVMI---QRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRS 256          
The following BLAST results are available for this feature:
BLAST of CX295636 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
P2C42_ORYSJ2.828e-1842.98Probable protein phosphatase 2C 42 OS=Oryza sativa... [more]
P2C47_ORYSJ4.824e-1842.15Probable protein phosphatase 2C 47 OS=Oryza sativa... [more]
P2C77_ORYSJ6.300e-1849.58Probable protein phosphatase 2C 77 OS=Oryza sativa... [more]
P2C74_ORYSJ6.300e-1847.37Probable protein phosphatase 2C 74 OS=Oryza sativa... [more]
P2C02_ORYSJ6.300e-1843.80Probable protein phosphatase 2C 2 OS=Oryza sativa ... [more]
PPMBL_HUMAN1.404e-1740.85Probable protein phosphatase 1B-like OS=Homo sapie... [more]
PPM1A_BOVIN1.404e-1743.07Protein phosphatase 1A OS=Bos taurus GN=PPM1A PE=2... [more]
PP2C1_CAEEL1.404e-1743.33Probable protein phosphatase 2C F42G9.1 OS=Caenorh... [more]
PP2C1_SCHPO1.833e-1745.95Protein phosphatase 2C homolog 1 OS=Schizosaccharo... [more]
PPM1A_RAT2.394e-1743.07Protein phosphatase 1A OS=Rattus norvegicus GN=Ppm... [more]

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Properties
Property NameValue
Genbank descriptionC05074C09SK DroRLeaf1 Citrus clementina cDNA clone C05074C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295636 ID=CX295636; Name=CX295636; organism=Citrus clementina; type=EST; length=759bp
AGGATTCGGCCGAGGGAATCCGTGAAGTGGAAGCAGACAATGCAGGCGAG
CTTTGGGAAGATGGATAAGGAGGTGCAAGATTGGAGTGTGAGTTCCAAGA
TCTCTAACTGCCGCTGCGAGTTACAGACTCCGCAGTGCGACGCCGTTGGA
TCTACCGCCGTCGTTGCTGTCGTCACTCCTGGAAAGCTTATCGTCTCTAA
CTGCGGCGACTCTCGTGCTGTGCTCTGCCGAAACGGCGTCGCGGTTCCTC
TGTCCAACGATCATAAACCTGATCGCCCGGATGAGTTGCTTAGAATCGAA
GCCGCCGGCGGCCGTGTGATTTACTGGGACGGTCCGAGAGTGCTTGGCGT
TCTCGCGATGTCGAGAGCGATCGGAGACAATTACTTAAAGCCGTATGTGA
TATCGGAGCCGGAGGTGACCGTGACTGAGCGTACGGCGGAGGATGAGTGT
TTGATTCTGGCGAGCGATGGGTTATGGGACGTGGTGTCGAACGAGACGGC
GTGCAGCGTGGTGCGCACGTGTTTCCGAGCTCAGAAGGCGGCGGCTGCAG
CTTCACCACCCGGATCGCCGGGGAGCGAGGTGGCAGTGTCTGGTCAAAGC
TCTGACAAAGCTTGCTTGGACGCATCAATTTTGTTGACCAAGCTGGCCTT
GGCTAGGCGGAGTTCGGATAATGTCAGCGTTGTGGTGGTCGATTTAGGAG
GAATCAAGTCAAAGCAGGGATTAGTAGTAATTAAATGAGTATATATATAT
ATACGCAAT
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