CX295650

Overview
NameCX295650
Unique NameCX295650
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length410
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295650 vs. ExPASy Swiss-Prot
Match: MAK5_ASPOR (ATP-dependent RNA helicase mak5 OS=Aspergillus oryzae GN=mak5 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.587e-11
Identity = 37/99 (37.37%), Postives = 55/99 (55.56%), Query Frame = 2
Query:    8 WKSLGLSDLLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVR 304
            W+SLGLS  ++  +    F  P+ VQ A + P+L G+DV+  A TGSGKT ++ +P++E     L      +S+K  T P A  LVL P   L  Q+ +
Sbjct:  186 WESLGLSPEILAGISKMKFTTPTSVQKACIPPILDGRDVIGKASTGSGKTLAFGIPILEYYLEKLRSKTQKDSEKTETTPIA--LVLSPTRELAHQLAK 282          
BLAST of CX295650 vs. ExPASy Swiss-Prot
Match: RH41_ARATH (DEAD-box ATP-dependent RNA helicase 41 OS=Arabidopsis thaliana GN=RH41 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.413e-11
Identity = 43/122 (35.25%), Postives = 65/122 (53.28%), Query Frame = 2
Query:    2 VTWKSLGLSDLLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 367
            +T+ S GL   L+  LE +G+  P+ +Q  ++   L+GK ++ +A+TGSGKT S+LVP+I + CT       S+  + P      ++VL P   LC QV   A  L    G P   A+ V G
Sbjct:  110 LTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPIISR-CTTYHSEHPSDQRRNPL-----AMVLAPTRELCVQVEDQAKMLG--KGLPFKTALVVGG 223          
BLAST of CX295650 vs. ExPASy Swiss-Prot
Match: MAK5_ASPTN (ATP-dependent RNA helicase mak5 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=mak5 PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.413e-11
Identity = 37/99 (37.37%), Postives = 55/99 (55.56%), Query Frame = 2
Query:    8 WKSLGLSDLLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVR 304
            W+SLGLS  ++ +L    F  P+ VQ + + P+L G DVV  A TGSGKT ++ +P++E           +  DK+ T P A  L+L P   L  Q+V+
Sbjct:  204 WESLGLSPEILNSLSKLKFSSPTAVQKSCIPPILDGHDVVGKASTGSGKTLAFGIPILEYYLEKKRRETKNKDDKKETSPIA--LILSPTRELAHQLVK 300          
BLAST of CX295650 vs. ExPASy Swiss-Prot
Match: RH47_ARATH (DEAD-box ATP-dependent RNA helicase 47 OS=Arabidopsis thaliana GN=RH47 PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.764e-11
Identity = 36/105 (34.29%), Postives = 63/105 (60.00%), Query Frame = 2
Query:    5 TWKSLGLSDLLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANAL 319
            +++ LGL D L+ +LE  GF  P+ VQ+A+V  ++ G D VI + TGSGKT +YL+P++ ++      S +S+S+ +       ++++ P+  L  Q+VR    L
Sbjct:  111 SFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKR-TEIQAMIVAPSRELGMQIVREVEKL 214          
BLAST of CX295650 vs. ExPASy Swiss-Prot
Match: SRMB_ECOLI (ATP-dependent RNA helicase srmB OS=Escherichia coli (strain K12) GN=srmB PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.832e-11
Identity = 40/106 (37.74%), Postives = 60/106 (56.60%), Query Frame = 2
Query:    5 TWKSLGLSDLLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALS 322
            T+  L L + L+ AL++ GF RP+ +QAA++ P L G+DV+ +A TG+GKT +YL+P ++ L             K+  PPR   L+L P   L  QV   A  L+
Sbjct:    5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLL--------DFPRKKSGPPRI--LILTPTRELAMQVSDHARELA 100          
The following BLAST results are available for this feature:
BLAST of CX295650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
MAK5_ASPOR2.587e-1137.37ATP-dependent RNA helicase mak5 OS=Aspergillus ory... [more]
RH41_ARATH4.413e-1135.25DEAD-box ATP-dependent RNA helicase 41 OS=Arabidop... [more]
MAK5_ASPTN4.413e-1137.37ATP-dependent RNA helicase mak5 OS=Aspergillus ter... [more]
RH47_ARATH5.764e-1134.29DEAD-box ATP-dependent RNA helicase 47 OS=Arabidop... [more]
SRMB_ECOLI9.832e-1137.74ATP-dependent RNA helicase srmB OS=Escherichia col... [more]

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Properties
Property NameValue
Genbank descriptionC05074D11SK DroRLeaf1 Citrus clementina cDNA clone C05074D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295650 ID=CX295650; Name=CX295650; organism=Citrus clementina; type=EST; length=410bp
TGTCACATGGAAGTCTCTAGGCTTATCCGATCTCCTCATTCGTGCTCTCG
AAAATTCCGGCTTTGGGAGACCCTCTATTGTTCAGGCTGCTTCCGTAGGA
CCTGTTCTTTCAGGAAAAGATGTTGTGATTGCGGCAGAGACTGGTAGCGG
TAAAACACATAGCTACCTCGTCCCTCTGATTGAAAAGCTGTGCACTGCAT
TGGGTGATTCGGAGAATTCCAATTCTGATAAAGAGCCGACTCCTCCCCGT
GCACCTTCTCTAGTTCTTTGTCCAAATGTAGTACTTTGTGAACAAGTGGT
TCGAATGGCTAATGCTCTTTCTGCAGATAATGGTGAACCACTTGTACGAG
CTGTAGCTGTATGTGGAGGACAGGTTCTAATGCTCTAATCTTTCTTGATA
CTGATACACT
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