CX295688 | Citrus Genome Database

Overview


Name	CX295688
Unique Name	CX295688
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	700

Libraries


Library Name	Type
DroRLeaf1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

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BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: PAP1L_HUMAN (Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.289e-19
Identity = 57/163 (34.97%), Postives = 88/163 (53.99%), Query Frame = 3

Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIK----KDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQRED---TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            S+YVG++HP VT A+L E FS  GP+   ++ +    +    Y ++++     A  A+ T+N   + GQPI++ W    SQR+     SG  N+F+ +L   + +  L+  FS F      +V  D+    SRGFGFV F   E AQ AIN +NG  L +R++
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEMLKGQPIRIMW----SQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAINTMNGMLLNDRKV 168

HSP 2 Score: 75.485 bits (184), Expect = 3.076e-13
Identity = 57/206 (27.67%), Postives = 96/206 (46.60%), Query Frame = 3

Query:  108 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQVQIPKC----CRAYNGIS 692
            P    S   ++++ N+   + N  L + FS+ G +  CK+   +  S  +GFV +    +A  AI T+NG  +  + + V    +  +RE   G       N++V +L  +V +  L   FS F      +VM D  +G SR FGFV+F   E+AQ A+  +NGK +  R +    A K     +E + +  +      R Y G++
Sbjct:   91 PGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVN 295

HSP 3 Score: 69.3218 bits (168), Expect = 2.204e-11
Identity = 45/174 (25.86%), Postives = 85/174 (48.85%), Query Frame = 3

Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGH---------------FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            ++YV N+   V    LQ++FS  G +   K+++ +      +GFV++     A  A+V +NG+ + G+ +    A    +R++                    N++V +L   + D  L   FS +   + A+VM +   G S+GFGFV F + E+A  A+ ++NG+ +G + +
Sbjct:  192 NIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 363

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BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: PABP_KLULA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Kluyveromyces lactis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.872e-19
Identity = 55/163 (33.74%), Postives = 85/163 (52.15%), Query Frame = 3

Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            S+YVG + P +T ALL +VFS  GP+   ++    + K    Y +V+Y D  +   AI  LN   I G+P ++ W    S+R+      G  N+F+ +L P + +  L   FS F      +V  D+  G SRGFGFV F+ + DA+ AI  +NG  +   ++
Sbjct:   51 SLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQELNYAEINGRPCRIMW----SERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVLSCKVALDEN-GNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEV 208

HSP 2 Score: 73.559 bits (179), Expect = 1.169e-12
Identity = 50/182 (27.47%), Postives = 87/182 (47.80%), Query Frame = 3

Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR----EDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQVQ 656
            ++++ N+HP + N  L E FS+ G +  CK+   +  +   +GFV + +   A  AI  +NG  + G  + V        R    E+   +F N++V ++  E TD      FS +     A +  D + G+ +GFGFV+F +   A  A+ +LNGK   ++ +    A K     +E + Q
Sbjct:  139 NIFIKNLHPAIDNKALHETFSTFGEVLSCKVALDENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISKLEEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAE-GKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERAEELKKQ 319

HSP 3 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 50/165 (30.30%), Postives = 82/165 (49.70%), Query Frame = 3

Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR-EDTSGHF--------------NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLN 575
            ++YV NI  + T+   +++FS  G +    L K  +     +GFV++ D  +AA A+  LNG+    Q + V  A    +R E+    +              N+F+ +L   + D  L   F+ + T + ARVM DQ+ G S+GFGFV F + E+A  A+ + N
Sbjct:  232 NIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQE-GNSKGFGFVCFSSPEEATKAMTEKN 395

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BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 4.899e-19
Identity = 56/171 (32.75%), Postives = 99/171 (57.89%), Query Frame = 3

Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQP--IKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACF-SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 617
            ++++G + P VT A +Q+V+++ G     KLI+       + Y FV++     A+ A+ ++N + I G     K+NWA     RE +   +  +++FVGDLSP V +  +++ F S + +C  A++M D +T  SRG+GFV F ++ D +SA+ ++ G+  G+R IR   A
Sbjct:   94 TLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-SMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLA 263

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BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: PABPB_XENLA (Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-B PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.357e-19
Identity = 55/163 (33.74%), Postives = 91/163 (55.83%), Query Frame = 3

Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCK----LIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            S+YVG++HP VT A+L E FS  GP+   +    +I +    Y +V++     A  A+ T+N   I G+P+++ W    SQR+ +   SG  N+F+ +L   + +  L+  FS F      +V+ D+    S+G+GFV F  QE A+ AI+ +NG  L +R++
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKV 168

HSP 2 Score: 85.5001 bits (210), Expect = 2.972e-16
Identity = 55/179 (30.73%), Postives = 88/179 (49.16%), Query Frame = 3

Query:  108 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 623
            P    S   ++++ N+   + N  L + FS+ G +  CK++  +  S  YGFV +  + +A  AI  +NG  +  + + V    +  +RE   G       NV++ +   ++ D  L   F  +      +VM D   G+SRGFGFVSF   EDAQ A++D+NGK L  + I    A K
Sbjct:   91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQK 268

[Close]

BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: PABP1_RAT (Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.091e-18
Identity = 55/163 (33.74%), Postives = 90/163 (55.21%), Query Frame = 3

Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCK----LIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            S+YVG++HP VT A+L E FS  GP+   +    +I +    Y +V++     A  A+ T+N   I G+P+++ W    SQR+ +   SG  N+F+ +L   + +  L+  FS F      +V+ D+    S+G+GFV F  QE A+ AI  +NG  L +R++
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 168

HSP 2 Score: 88.9669 bits (219), Expect = 2.688e-17
Identity = 55/179 (30.73%), Postives = 91/179 (50.84%), Query Frame = 3

Query:  108 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 623
            P    S   ++++ N+   + N  L + FS+ G +  CK++  +  S  YGFV +  + +A  AI  +NG  +  + + V    +  +RE   G       NV++ +   ++ D  L   F  F      +VM D+ +G+S+GFGFVSF   EDAQ A++++NGK L  +QI    A K
Sbjct:   91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268

HSP 3 Score: 70.0922 bits (170), Expect = 1.292e-11
Identity = 47/174 (27.01%), Postives = 82/174 (47.13%), Query Frame = 3

Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGH---------------FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            +VY+ N    + +  L+E+F   GP    K++  +      +GFV +     A  A+  +NG+ + G+ I V  A    +R+                     N++V +L   + D  L   FS F T + A+VM +   GRS+GFGFV F + E+A  A+ ++NG+ +  + +
Sbjct:  192 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363

[Close]

BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: PABP1_MOUSE (Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.091e-18
Identity = 55/163 (33.74%), Postives = 90/163 (55.21%), Query Frame = 3

Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCK----LIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            S+YVG++HP VT A+L E FS  GP+   +    +I +    Y +V++     A  A+ T+N   I G+P+++ W    SQR+ +   SG  N+F+ +L   + +  L+  FS F      +V+ D+    S+G+GFV F  QE A+ AI  +NG  L +R++
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 168

HSP 2 Score: 89.3521 bits (220), Expect = 2.058e-17
Identity = 55/179 (30.73%), Postives = 91/179 (50.84%), Query Frame = 3

Query:  108 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 623
            P    S   ++++ N+   + N  L + FS+ G +  CK++  +  S  YGFV +  + +A  AI  +NG  +  + + V    +  +RE   G       NV++ +   ++ D  L   F  F      +VM D+ +G+S+GFGFVSF   EDAQ A++++NGK L  +QI    A K
Sbjct:   91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268

HSP 3 Score: 70.0922 bits (170), Expect = 1.292e-11
Identity = 47/174 (27.01%), Postives = 82/174 (47.13%), Query Frame = 3

Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGH---------------FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            +VY+ N    + +  L+E+F   GP    K++  +      +GFV +     A  A+  +NG+ + G+ I V  A    +R+                     N++V +L   + D  L   FS F T + A+VM +   GRS+GFGFV F + E+A  A+ ++NG+ +  + +
Sbjct:  192 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363

[Close]

BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: PABP1_HUMAN (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.091e-18
Identity = 55/163 (33.74%), Postives = 90/163 (55.21%), Query Frame = 3

Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCK----LIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            S+YVG++HP VT A+L E FS  GP+   +    +I +    Y +V++     A  A+ T+N   I G+P+++ W    SQR+ +   SG  N+F+ +L   + +  L+  FS F      +V+ D+    S+G+GFV F  QE A+ AI  +NG  L +R++
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 168

HSP 2 Score: 88.5817 bits (218), Expect = 3.511e-17
Identity = 55/179 (30.73%), Postives = 91/179 (50.84%), Query Frame = 3

Query:  108 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 623
            P    S   ++++ N+   + N  L + FS+ G +  CK++  +  S  YGFV +  + +A  AI  +NG  +  + + V    +  +RE   G       NV++ +   ++ D  L   F  F      +VM D+ +G+S+GFGFVSF   EDAQ A++++NGK L  +QI    A K
Sbjct:   91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268

HSP 3 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 46/174 (26.44%), Postives = 82/174 (47.13%), Query Frame = 3

Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGH---------------FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            +VY+ N    + +  L+++F   GP    K++  +      +GFV +     A  A+  +NG+ + G+ I V  A    +R+                     N++V +L   + D  L   FS F T + A+VM +   GRS+GFGFV F + E+A  A+ ++NG+ +  + +
Sbjct:  192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363

[Close]

BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.091e-18
Identity = 55/163 (33.74%), Postives = 90/163 (55.21%), Query Frame = 3

Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCK----LIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            S+YVG++HP VT A+L E FS  GP+   +    +I +    Y +V++     A  A+ T+N   I G+P+++ W    SQR+ +   SG  N+F+ +L   + +  L+  FS F      +V+ D+    S+G+GFV F  QE A+ AI  +NG  L +R++
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 168

HSP 2 Score: 88.5817 bits (218), Expect = 3.511e-17
Identity = 55/179 (30.73%), Postives = 91/179 (50.84%), Query Frame = 3

Query:  108 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 623
            P    S   ++++ N+   + N  L + FS+ G +  CK++  +  S  YGFV +  + +A  AI  +NG  +  + + V    +  +RE   G       NV++ +   ++ D  L   F  F      +VM D+ +G+S+GFGFVSF   EDAQ A++++NGK L  +QI    A K
Sbjct:   91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268

HSP 3 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 46/174 (26.44%), Postives = 82/174 (47.13%), Query Frame = 3

Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGH---------------FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            +VY+ N    + +  L+++F   GP    K++  +      +GFV +     A  A+  +NG+ + G+ I V  A    +R+                     N++V +L   + D  L   FS F T + A+VM +   GRS+GFGFV F + E+A  A+ ++NG+ +  + +
Sbjct:  192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363

[Close]

BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.091e-18
Identity = 59/163 (36.20%), Postives = 89/163 (54.60%), Query Frame = 3

Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEG---CKLIKKDKS-SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQRED---TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            S+YVG++HP VT A+L E FS  GP+     C+ I   +S  Y ++++     A  A+ T+N   I G+PI++ W    SQR+     SG  NVF+ +L   + +  L+  FS F      +V+ D+    SRG+GFV F  QE A  AI  +NG  L +R++
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMW----SQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEH--GSRGYGFVHFETQEAANRAIQTMNGMLLNDRKV 168

HSP 2 Score: 91.2781 bits (225), Expect = 5.417e-18
Identity = 58/179 (32.40%), Postives = 92/179 (51.40%), Query Frame = 3

Query:  108 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 623
            P    S   +V++ N+   + N  L + FS+ G +  CK++  +  S  YGFV +  + +A  AI T+NG  +  + + V    +  +RE   G       NV++ +   ++ D  L   FS F      +VM D  TGRSRGFGFV++ N E+AQ A++++NGK +  R I    A K
Sbjct:   91 PGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQK 268

HSP 3 Score: 69.707 bits (169), Expect = 1.688e-11
Identity = 47/174 (27.01%), Postives = 84/174 (48.28%), Query Frame = 3

Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS---SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGH---------------FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            +VY+ N    + +  L+E+FS+ G     K++  D      +GFV+Y +   A  A+  +NG+ + G+ I V  A    +R+                     N++V +L   + D  L   FS + T + A+VM +   G S+GFGFV F + E+A  A+ ++NG+ +  + +
Sbjct:  192 NVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363

[Close]

BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.862e-18
Identity = 66/203 (32.51%), Postives = 104/203 (51.23%), Query Frame = 3

Query:   96 GNLPPRFDASTCRSVYVG------NIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQP---IKVNWAYASSQREDTS-------GHFNVFVGDLSPEVTDATLFACF-SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQV 653
            G+L P +D +T R ++        N+     N L     SS GP        K+   Y FVD+     AA A++  NG  I   P   +K+NWA +S    + S        + ++FVGDL+P VT++ LF  F + + + S A+++ DQ TG S+G+GFV F N ++ Q A++++ G +L  R I+      G TSG ++ V
Sbjct:   59 GDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGP--------KNNQGYCFVDFPSSTHAANALLK-NGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRAIKV-----GPTSGQQQHV 247

The following BLAST results are available for this feature:

BLAST of CX295688 vs. ExPASy Swiss-Prot

BLAST of CX295688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123


Match Name	E-value	Identity	Description
PAP1L_HUMAN	1.289e-19	34.97	Polyadenylate-binding protein 1-like OS=Homo sapie...	[more]
PABP_KLULA	2.872e-19	33.74	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
YG41_SCHPO	4.899e-19	32.75	Uncharacterized RNA-binding protein C23E6.01c OS=S...	[more]
PABPB_XENLA	8.357e-19	33.74	Polyadenylate-binding protein 1-B OS=Xenopus laevi...	[more]
PABP1_RAT	1.091e-18	33.74	Polyadenylate-binding protein 1 OS=Rattus norvegic...	[more]
PABP1_MOUSE	1.091e-18	33.74	Polyadenylate-binding protein 1 OS=Mus musculus GN...	[more]
PABP1_HUMAN	1.091e-18	33.74	Polyadenylate-binding protein 1 OS=Homo sapiens GN...	[more]
PABP1_BOVIN	1.091e-18	33.74	Polyadenylate-binding protein 1 OS=Bos taurus GN=P...	[more]
EPAB_XENTR	1.091e-18	36.20	Embryonic polyadenylate-binding protein OS=Xenopus...	[more]
NAM8_YEAST	1.862e-18	32.51	Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 P...	[more]

Pages

Properties


Property Name	Value
Genbank description	C05074H02SK DroRLeaf1 Citrus clementina cDNA clone C05074H02, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX295688 ID=CX295688; Name=CX295688; organism=Citrus clementina; type=EST; length=700bp
GAGGGGCTGAAGCACAAACAATGATGCAGCAGCAGTCTTTATACCAATAC
CATCCCAGTCTCTTAGCTGCTCCTCAGATAGAGCCTATCTTGAGTGGAAA
TCTGCCTCCGCGATTTGATGCAAGTACATGCCGCAGCGTGTATGTTGGAA
ACATTCATCCTCAGGTTACAAATGCCCTGCTTCAAGAGGTTTTTTCAAGT
ACCGGTCCCCTTGAAGGATGCAAGCTCATTAAAAAAGATAAGTCATCCTA
TGGCTTTGTGGACTACTTTGATCGCAGATCAGCTGCCCTTGCAATTGTGA
CTCTTAATGGAAGGCACATATTTGGACAACCTATTAAAGTAAACTGGGCT
TATGCTAGCAGCCAGAGAGAGGACACATCAGGTCATTTCAACGTTTTTGT
TGGTGATCTTAGCCCTGAAGTTACAGATGCTACTTTGTTTGCGTGCTTCT
CTGTGTTTCCTACTTGTTCGGATGCAAGGGTTATGTGGGACCAAAAGACT
GGGCGTTCAAGGGGTTTTGGGTTTGTTTCTTTTCGGAATCAGGAGGATGC
CCAAAGTGCAATAAATGACTTAAATGGGAAGTGGCTTGGTAATAGACAGA
TTCGGTGCAACTGGGCTGCAAAAGGTGCTACCTCTGGTGATGAAAAGCAA
GTTCAGATTCCAAAGTGTTGTAGAGCTTACAATGGGATATCTGAAGATGG