CX295688

Overview
NameCX295688
Unique NameCX295688
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: EPABA_XENLA (Embryonic polyadenylate-binding protein A OS=Xenopus laevis GN=epabp-A PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.862e-18
Identity = 58/163 (35.58%), Postives = 89/163 (54.60%), Query Frame = 3
Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEG---CKLIKKDKS-SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQRED---TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            S+Y+G++HP VT A+L E FS  GP+     C+ I   +S SY ++++     A  A+ T+N   I G+PI++ W    SQR+     SG  NVF+ +L   + +  L+  FS F      +V+ D+    SRG+GFV F   E A  AI  +NG  L +R++
Sbjct:   12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTMNFEVIKGRPIRIMW----SQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEH--GSRGYGFVHFETHEAANRAIQTMNGMLLNDRKV 168          

HSP 2 Score: 89.3521 bits (220), Expect = 2.058e-17
Identity = 57/179 (31.84%), Postives = 91/179 (50.84%), Query Frame = 3
Query:  108 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 623
            P    S   +V++ N+   + N  L + FS+ G +  CK++  +  S  YGFV +    +A  AI T+NG  +  + + V    +  +RE   G       NV++ +   ++ D  L   FS F      +VM D  +GRSRGFGFV++ N E+AQ A++++NGK +  R I    A K
Sbjct:   91 PGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-SGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQK 268          

HSP 3 Score: 68.1662 bits (165), Expect = 4.910e-11
Identity = 46/174 (26.44%), Postives = 83/174 (47.70%), Query Frame = 3
Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS---SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGH---------------FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            +VY+ N    + +  L+E+FS+ G     K++  D      +GFV+Y +   A  A+  +NG+ + G+ I V  A    +R+                     N++V +L   + D  L   F  + T + A+VM +   G S+GFGFV F + E+A  A+ ++NG+ +  + +
Sbjct:  192 NVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: PABP3_HUMAN (Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.431e-18
Identity = 56/163 (34.36%), Postives = 88/163 (53.99%), Query Frame = 3
Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCK----LIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            S+YVG++HP VT A+L E FS  GP+   +    LI    S+Y +V++   + A  A+ T+N   I G+P+++ W    SQR+ +   SG  N+FV +L   + +  L+   S F       V+ D+    S+G+GFV F   E A+ AI  +NG  L  R++
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKV 168          

HSP 2 Score: 86.6557 bits (213), Expect = 1.334e-16
Identity = 55/179 (30.73%), Postives = 89/179 (49.72%), Query Frame = 3
Query:  108 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHF-----NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 623
            P    S   +++V N+   + N  L +  S+ G +  C ++  +  S  YGFV +    +A  AI  +NG  + G+ + V    +  +RE   G       NV++ +   ++ D  L   F  F      +VM D+ +G+S+GFGFVSF   EDAQ A++++NGK L  +QI    A K
Sbjct:   91 PSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268          

HSP 3 Score: 70.4774 bits (171), Expect = 9.894e-12
Identity = 46/174 (26.44%), Postives = 82/174 (47.13%), Query Frame = 3
Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGH---------------FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            +VY+ N    + +  L+++F   GP    K++  +      +GFV +     A  A+  +NG+ + G+ I V  A    +R+                     N++V +L   + D  L   FS F T + A+VM +   GRS+GFGFV F + E+A  A+ ++NG+ +  + +
Sbjct:  192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: EPABB_XENLA (Embryonic polyadenylate-binding protein B OS=Xenopus laevis GN=epabp-B PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.431e-18
Identity = 58/163 (35.58%), Postives = 89/163 (54.60%), Query Frame = 3
Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEG---CKLIKKDKS-SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQRED---TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            S+Y+G++HP VT A+L E FS  GP+     C+ I   +S  Y ++++     A  A+ T+N   I G+PI++ W    SQR+     SG  NVF+ +L   + +  L+  FS F      +V+ D+    SRG+GFV F  QE A  AI  +NG  L +R++
Sbjct:   12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMW----SQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEY--GSRGYGFVHFETQEAANRAIQTMNGMLLNDRKV 168          

HSP 2 Score: 88.9669 bits (219), Expect = 2.688e-17
Identity = 56/179 (31.28%), Postives = 91/179 (50.84%), Query Frame = 3
Query:  108 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 623
            P    S   +V++ N+   + N  L + FS+ G +  CK++  +  S  YGFV +  + +A  AI T+NG  +  + + V    +  +RE   G       NV++ +   ++ D  L   FS F      +VM D  +GRSRGFGFV++ N E+AQ A+ ++NGK +  R +    A K
Sbjct:   91 PGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQK 268          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: PABP_CANGA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida glabrata GN=PAB1 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.176e-18
Identity = 56/163 (34.36%), Postives = 90/163 (55.21%), Query Frame = 3
Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            S+YVG++ P V+ A L ++FS  G +   ++    I K    Y +V++ D  +A  AI  LN   I G+  ++ W    SQR+ +    G  N+F+ +L P++ +  L+  FSVF     ++V  D+ TG+S+GFG+V F   E A  AI+ LNG  L  ++I
Sbjct:   36 SLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEKLNFTPIKGKLCRIMW----SQRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGNILSSKVATDE-TGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEI 193          

HSP 2 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 48/171 (28.07%), Postives = 83/171 (48.54%), Query Frame = 3
Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT-----SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 623
            ++++ N+HP + N  L + FS  G +   K+   +      +G+V + +  SA+ AI  LNG  + GQ I V    +  +RE       +   NV++ +++ E TD       + F   +D+ V+     G ++GFGFV+F N EDA   + +LN      + +  N A K
Sbjct:  124 NIFIKNLHPDIDNKALYDTFSVFGNILSSKVATDETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYVGPHLSKKERESKFEEMKANFTNVYIKNINTETTDKEFEELVAKFGK-TDSVVLERTPEGENKGFGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNRAQK 293          

HSP 3 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 45/165 (27.27%), Postives = 80/165 (48.48%), Query Frame = 3
Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK---DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA-------------YASSQREDTSGH--FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLN 575
            +VY+ NI+ + T+   +E+ +  G  +   L +    +   +GFV++ +   A   +  LN     GQP+ VN A             Y +++ E  + +   N+F+ +L   + D  L   F+ + T + A+VM  +  G+S+GFGFV F   E+A  AI + N
Sbjct:  217 NVYIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGENKGFGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNRAQKKYERQQELKKQYEATRMEKMAKYQGINLFIKNLDDSIDDKKLEEEFAPYGTITSAKVMTTEN-GKSKGFGFVCFSTPEEATKAITEKN 380          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.176e-18
Identity = 54/163 (33.13%), Postives = 89/163 (54.60%), Query Frame = 3
Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCK----LIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            S+YVG++HP  T A+L E FS  GP+   +    +I +    Y +V++     A  A+ T+N   I G+P+++ W    SQR+ +   SG  N+F+ +L   + +  L+  FS F      +V+ D+    S+G+GFV F  QE A+ AI  +NG  L +R++
Sbjct:   12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 168          

HSP 2 Score: 88.5817 bits (218), Expect = 3.511e-17
Identity = 55/179 (30.73%), Postives = 91/179 (50.84%), Query Frame = 3
Query:  108 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 623
            P    S   ++++ N+   + N  L + FS+ G +  CK++  +  S  YGFV +  + +A  AI  +NG  +  + + V    +  +RE   G       NV++ +   ++ D  L   F  F      +VM D+ +G+S+GFGFVSF   EDAQ A++++NGK L  +QI    A K
Sbjct:   91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268          

HSP 3 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 46/174 (26.44%), Postives = 82/174 (47.13%), Query Frame = 3
Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGH---------------FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            +VY+ N    + +  L+++F   GP    K++  +      +GFV +     A  A+  +NG+ + G+ I V  A    +R+                     N++V +L   + D  L   FS F T + A+VM +   GRS+GFGFV F + E+A  A+ ++NG+ +  + +
Sbjct:  192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: PABPA_XENLA (Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-A PE=1 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 7.074e-18
Identity = 54/163 (33.13%), Postives = 90/163 (55.21%), Query Frame = 3
Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCK----LIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            S+YVG++H  VT A+L E FS  GP+   +    +I +    Y +V++     A  A+ T+N   I G+P+++ W    SQR+ +   SG  N+F+ +L   + +  L+  FS F      +V+ D+    S+G+GFV F  QE A+ AI+ +NG  L +R++
Sbjct:   12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKV 168          

HSP 2 Score: 82.0333 bits (201), Expect = 3.286e-15
Identity = 51/179 (28.49%), Postives = 88/179 (49.16%), Query Frame = 3
Query:  108 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 623
            P    S   ++++ N+   + N  L + FS+ G +  CK++  +  S  YGFV +  + +A  AI  +NG  +  + + V    +  +RE   G       NV++ +   ++ D  L   F  +      +VM D   G+S+GFGFVSF   EDAQ A++++NGK +  + +    A K
Sbjct:   91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDN-GKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQK 268          

HSP 3 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 46/174 (26.44%), Postives = 81/174 (46.55%), Query Frame = 3
Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGH---------------FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            +VY+ N    + +  L+E+F   GP    K++  D      +GFV +     A  A+  +NG+ + G+ + V  A    +R+                     N++V +L   + D  L   F  F T + A+VM +   GRS+GFGFV F + E+A  A+ ++NG+ +  + +
Sbjct:  192 NVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: PABP_ASHGO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya gossypii GN=PAB1 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.239e-18
Identity = 56/181 (30.94%), Postives = 95/181 (52.49%), Query Frame = 3
Query:   75 QIEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS-SQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            Q  P  + +  P+ + S   S+YVG + P V+ ALL ++FS  G +   ++    I      Y +V++ D  +   AI  LN   I G+P ++ W+    S R+  SG  N+++ +L P + + +L   FS F      +V  D+  G SRGFGFV F N+ DA+ AI  ++G  + ++++
Sbjct:   20 QTAPTTTESETPKVETSGA-SLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQLNYTLIKGKPCRIMWSQRDPSLRKKGSG--NIYIKNLHPAIDNKSLHETFSTFGNILSCKVATDEN-GVSRGFGFVHFENESDARDAIEAVDGMLMNDQEV 196          

HSP 2 Score: 71.2478 bits (173), Expect = 5.801e-12
Identity = 53/165 (32.12%), Postives = 80/165 (48.48%), Query Frame = 3
Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA-------------YASSQREDTSGH--FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLN 575
            +VYV NI  + +    +E+F   G +    L K  +     +GFV++ D  +AA A+  LN     GQ + V  A             Y +++ E  + +   N+FV +L   + D  L   F+ F T + A+VM D+ TG SRGFGFV F   E+A  AI + N
Sbjct:  220 NVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDELNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRDE-TGNSRGFGFVCFSTPEEATKAITEKN 383          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: SAP49_SCHPO (Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe GN=sap49 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.576e-17
Identity = 54/181 (29.83%), Postives = 97/181 (53.59%), Query Frame = 3
Query:  111 RFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGD 641
            R D +   ++Y+GN+  +VT+++L E+    GP+    +    ++   + +GF ++   +    A   LN   +FG+PI+VN A +  +  +T    N+FVG+L P V +  L+  FS       A  +   + GRS+G+GFVS+ + E A +AI  +N ++L N+ I  ++A K    G+
Sbjct:    4 REDRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQILNQVKLFGKPIRVNRA-SQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKREGKGE 183          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: PABP4_HUMAN (Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.585e-17
Identity = 55/163 (33.74%), Postives = 87/163 (53.37%), Query Frame = 3
Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCK----LIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            S+YVG++H  VT A+L E FS  GP+   +    +I +    Y +V++     A  A+ T+N   I G+PI++ W    SQR+ +   SG  NVF+ +L   + +  L+  FS F      +V+ D+    S+G+ FV F  QE A  AI  +NG  L +R++
Sbjct:   12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKV 168          

HSP 2 Score: 81.2629 bits (199), Expect = 5.605e-15
Identity = 54/179 (30.17%), Postives = 87/179 (48.60%), Query Frame = 3
Query:  108 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 623
            P    S   +V++ N+   + N  L + FS+ G +  CK++  +  S  Y FV +  + +A  AI  +NG  +  + + V    +  +RE   G       NV++ +   EV D +L   FS F      +VM D   G+S+GFGFVS+   EDA  A+ ++NGK +  + I    A K
Sbjct:   91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268          

HSP 3 Score: 73.9442 bits (180), Expect = 8.949e-13
Identity = 50/174 (28.74%), Postives = 87/174 (50.00%), Query Frame = 3
Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQRE-DTSGHF--------------NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            +VY+ N   +V +  L+E+FS  G     K+++        +GFV Y     A  A+  +NG+ I G+ I V  A    +R+ +    F              N+++ +L   + D  L   FS F + + A+VM +   GRS+GFGFV F + E+A  A+ ++NG+ +G++ +
Sbjct:  192 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: PABP_YEAST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Saccharomyces cerevisiae GN=PAB1 PE=1 SV=4)

HSP 1 Score: 87.8113 bits (216), Expect = 5.989e-17
Identity = 53/161 (32.92%), Postives = 89/161 (55.28%), Query Frame = 3
Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS-SQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            S+YVG++ P V+ A L ++FS  G +   ++    I K    Y +V++ D  +   AI  LN   I G+  ++ W+    S R+  SG  N+F+ +L P++ +  L+  FSVF     +++  D+  G+S+GFGFV F  +  A+ AI+ LNG  L  ++I
Sbjct:   39 SLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSG--NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDEN-GKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEI 196          

HSP 2 Score: 75.485 bits (184), Expect = 3.076e-13
Identity = 51/171 (29.82%), Postives = 83/171 (48.54%), Query Frame = 3
Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKV----NWAYASSQREDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 623
            ++++ N+HP + N  L + FS  G +   K+   +      +GFV + +  +A  AI  LNG  + GQ I V    +     SQ E+T  H+ N++V +++ E TD      F+ F     A +  D   G+ +GFGFV++   EDA  A+  LN   L   ++    A K
Sbjct:  127 NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDAD-GKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQK 296          

HSP 3 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 50/165 (30.30%), Postives = 79/165 (47.88%), Query Frame = 3
Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR-------------EDTSGH--FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLN 575
            ++YV NI+ + T+   QE+F+  GP+    L K        +GFV+Y     A  A+  LN   + G+ + V  A   ++R             E  + +   N+FV +L   V D  L   F+ + T + A+VM  +  G+S+GFGFV F   E+A  AI + N
Sbjct:  220 NLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTEN-GKSKGFGFVCFSTPEEATKAITEKN 383          
The following BLAST results are available for this feature:
BLAST of CX295688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
EPABA_XENLA1.862e-1835.58Embryonic polyadenylate-binding protein A OS=Xenop... [more]
PABP3_HUMAN2.431e-1834.36Polyadenylate-binding protein 3 OS=Homo sapiens GN... [more]
EPABB_XENLA2.431e-1835.58Embryonic polyadenylate-binding protein B OS=Xenop... [more]
PABP_CANGA3.176e-1834.36Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP1_PONAB3.176e-1833.13Polyadenylate-binding protein 1 OS=Pongo abelii GN... [more]
PABPA_XENLA7.074e-1833.13Polyadenylate-binding protein 1-A OS=Xenopus laevi... [more]
PABP_ASHGO9.239e-1830.94Polyadenylate-binding protein, cytoplasmic and nuc... [more]
SAP49_SCHPO1.576e-1729.83Spliceosome-associated protein 49 OS=Schizosacchar... [more]
PABP4_HUMAN4.585e-1733.74Polyadenylate-binding protein 4 OS=Homo sapiens GN... [more]
PABP_YEAST5.989e-1732.92Polyadenylate-binding protein, cytoplasmic and nuc... [more]

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Properties
Property NameValue
Genbank descriptionC05074H02SK DroRLeaf1 Citrus clementina cDNA clone C05074H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295688 ID=CX295688; Name=CX295688; organism=Citrus clementina; type=EST; length=700bp
GAGGGGCTGAAGCACAAACAATGATGCAGCAGCAGTCTTTATACCAATAC
CATCCCAGTCTCTTAGCTGCTCCTCAGATAGAGCCTATCTTGAGTGGAAA
TCTGCCTCCGCGATTTGATGCAAGTACATGCCGCAGCGTGTATGTTGGAA
ACATTCATCCTCAGGTTACAAATGCCCTGCTTCAAGAGGTTTTTTCAAGT
ACCGGTCCCCTTGAAGGATGCAAGCTCATTAAAAAAGATAAGTCATCCTA
TGGCTTTGTGGACTACTTTGATCGCAGATCAGCTGCCCTTGCAATTGTGA
CTCTTAATGGAAGGCACATATTTGGACAACCTATTAAAGTAAACTGGGCT
TATGCTAGCAGCCAGAGAGAGGACACATCAGGTCATTTCAACGTTTTTGT
TGGTGATCTTAGCCCTGAAGTTACAGATGCTACTTTGTTTGCGTGCTTCT
CTGTGTTTCCTACTTGTTCGGATGCAAGGGTTATGTGGGACCAAAAGACT
GGGCGTTCAAGGGGTTTTGGGTTTGTTTCTTTTCGGAATCAGGAGGATGC
CCAAAGTGCAATAAATGACTTAAATGGGAAGTGGCTTGGTAATAGACAGA
TTCGGTGCAACTGGGCTGCAAAAGGTGCTACCTCTGGTGATGAAAAGCAA
GTTCAGATTCCAAAGTGTTGTAGAGCTTACAATGGGATATCTGAAGATGG
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