CX295688

Overview
NameCX295688
Unique NameCX295688
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: PABP_SCHPO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Schizosaccharomyces pombe GN=pab1 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 7.822e-17
Identity = 54/172 (31.40%), Postives = 90/172 (52.33%), Query Frame = 3
Query:  108 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            P   A T  S+YVG + P VT A+L E+F+S GP+   ++    + +    Y +V++ +      A+  LN   I G+P ++ W    SQR+ +    G  NVF+ +L P + +  L   FS F      +V  D+  G ++G+GFV F + E A +AI  +NG  L ++++
Sbjct:   72 PSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMW----SQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDE-LGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKV 238          

HSP 2 Score: 80.4925 bits (197), Expect = 9.561e-15
Identity = 51/193 (26.42%), Postives = 90/193 (46.63%), Query Frame = 3
Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGH---------------FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQVQI 659
            +VY+ N+  ++T     ++F   G +    L+K        +GFV+Y +   A  A+  LN +   G+ + V  A    +RE+                    N+F+ +L  EV D  L A FS F T + A++M D++ G+S+GFGFV +   E+A  A+ ++N + L  + +    A +      + + QI
Sbjct:  262 NVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRSQLEAQI 453          

HSP 3 Score: 72.4034 bits (176), Expect = 2.604e-12
Identity = 47/171 (27.49%), Postives = 84/171 (49.12%), Query Frame = 3
Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT-----SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 623
            +V++ N+ P + N  L + FS+ G +  CK+   +  +   YGFV +    SA  AI  +NG  +  + + V    +  +R+       +   NV++ +L  E+T+      F  F   +   ++ DQ   + RGFGFV++ N E AQ A+++LN K    +++    A K
Sbjct:  169 NVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQND-KPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQK 338          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: PABP_LODEL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Lodderomyces elongisporus GN=PAB1 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.822e-17
Identity = 54/168 (32.14%), Postives = 85/168 (50.60%), Query Frame = 3
Query:  120 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            A    S+YVG ++P V  A L E+FS  G +   ++    + K    Y +V+Y        AI  LN   + G+P ++ W    SQR+ +   SG  N+F+ +L P + +  L   FS F      +V  D   G+S+ FGFV +  +E AQ+AI  +NG  L +R++
Sbjct:   63 AENSASLYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYVNYHKLEDGEKAIEELNYTPVEGRPCRIMW----SQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSVKVATDD-LGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREV 225          

HSP 2 Score: 71.633 bits (174), Expect = 4.441e-12
Identity = 47/182 (25.82%), Postives = 86/182 (47.25%), Query Frame = 3
Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT-----SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQVQ 656
            ++++ N+HP + N  L + FS+ G +   K+   D      +GFV Y    +A  AI ++NG  +  + + V    +   RE       + + N++V ++    T+      F+ F   +   +  D + G+S+GFGFV+F   E A  A+ +LN K +  ++I    A K     +E + Q
Sbjct:  156 NIFIKNLHPAIDNKALHDTFSAFGKILSVKVATDDLGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAE-GKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKRERTEELKKQ 336          

HSP 3 Score: 69.3218 bits (168), Expect = 2.204e-11
Identity = 50/174 (28.74%), Postives = 83/174 (47.70%), Query Frame = 3
Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR-EDTSGHF--------------NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            ++YV NI    T    +E+F+  G +    L K  +     +GFV++ +  +AA A+  LN + I GQ I V  A    +R E+    +              N+FV +L  ++    L   F  F T + ++VM D   G+S+GFGFV F   E+A  AI ++N + +  + +
Sbjct:  249 NIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQGVNLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVDD-AGKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPL 421          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: PABP_CANAL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida albicans GN=PAB1 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.022e-16
Identity = 54/168 (32.14%), Postives = 86/168 (51.19%), Query Frame = 3
Query:  120 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            A    S+YVG ++P V  A L E+FS  G +   ++    + K    Y +V+Y        AI  LN   I G+P ++ W    SQR+ +   SG  N+F+ +L P + +  L   FS F      +V  D+  G+S+ FGFV +   E A++AI ++NG  L +R++
Sbjct:   48 AENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEELNYNPIEGRPCRIMW----SQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDE-FGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREV 210          

HSP 2 Score: 73.9442 bits (180), Expect = 8.949e-13
Identity = 46/171 (26.90%), Postives = 83/171 (48.54%), Query Frame = 3
Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT-----SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 623
            ++++ N+HP + N  L + FS+ G +  CK+   +      +GFV Y    +A  AI  +NG  +  + + V    +   RE       +   N++V ++    ++ +    FS F   +   +  DQ  G+S+GFGFV+F + E A  A+ +LN K +  ++I    A K
Sbjct:  141 NIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQD-GKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQK 310          

HSP 3 Score: 70.8626 bits (172), Expect = 7.576e-12
Identity = 51/174 (29.31%), Postives = 81/174 (46.55%), Query Frame = 3
Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR-EDTSGHF--------------NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            ++YV NI    +    +++FS  G +    L K        +GFV++ D  SA  A+  LN + I GQ I V  A    +R E+    +              N+FV +L   +    L   F  F T + A+VM D+  G+S+GFGFV F   E+A  AI ++N + +  + +
Sbjct:  234 NIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDE-AGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPL 406          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: ELAV2_PONAB (ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.742e-16
Identity = 59/170 (34.71%), Postives = 89/170 (52.35%), Query Frame = 3
Query:   84 PILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 581
            P+ SGN     D+ T  ++ V  +   +T   L+ +F S G +E CKL++         YGFV+Y D + A  AI TLNG  +  + IKV++A  SS     +   N++V  L   +T   L   FS +     +R++ DQ TG SRG GF+ F  + +A+ AI  LNG+
Sbjct:   28 PVDSGNTE---DSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: ELAV2_MOUSE (ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.742e-16
Identity = 59/170 (34.71%), Postives = 89/170 (52.35%), Query Frame = 3
Query:   84 PILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 581
            P+ SGN     D+ T  ++ V  +   +T   L+ +F S G +E CKL++         YGFV+Y D + A  AI TLNG  +  + IKV++A  SS     +   N++V  L   +T   L   FS +     +R++ DQ TG SRG GF+ F  + +A+ AI  LNG+
Sbjct:   28 PVDSGNTE---DSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: ELAV2_HUMAN (ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.742e-16
Identity = 59/170 (34.71%), Postives = 89/170 (52.35%), Query Frame = 3
Query:   84 PILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 581
            P+ SGN     D+ T  ++ V  +   +T   L+ +F S G +E CKL++         YGFV+Y D + A  AI TLNG  +  + IKV++A  SS     +   N++V  L   +T   L   FS +     +R++ DQ TG SRG GF+ F  + +A+ AI  LNG+
Sbjct:   28 PVDSGNTE---DSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: ELAV2_RAT (ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.276e-16
Identity = 59/171 (34.50%), Postives = 88/171 (51.46%), Query Frame = 3
Query:   84 PILSGNLPPRFDASTCRSVYVGNIHPQ-VTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 581
            P+ SGN          ++  + N  PQ +T   L+ +F S G +E CKL++         YGFV+Y D + A  AI TLNG  +  + IKV++A  SS     +   N++V  L   +T   L   FS +     +R++ DQ TG SRG GF+ F  + +A+ AI  LNG+
Sbjct:   28 PVDSGN------TEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: PABP_YARLI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia lipolytica GN=PAB1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.972e-16
Identity = 48/160 (30.00%), Postives = 84/160 (52.50%), Query Frame = 3
Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            S+YVG + P VT A+L E+F+  GP+   ++    I +    Y +V++ ++     A+  LN   I  +P ++ W+        T G  N+++ +L P + +  L   FS F      ++  D+  G SRGFGFV + + E A+SAI  +NG  L ++++
Sbjct:   47 SLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQADGIRALEELNYSPIKERPCRIMWSQRDPALRKT-GAGNIYIKNLDPAIDNKALHDTFSAFGQILSCKIATDE-FGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKV 204          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: PABP_PICGU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia guilliermondii GN=PAB1 PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.972e-16
Identity = 51/163 (31.29%), Postives = 87/163 (53.37%), Query Frame = 3
Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            S+YVG ++P V  ALL E+FS  G +   ++    + K    Y +V++      + AI  LN   + G+P ++ W    SQR+ +   +G  N+F+ +L P + +  L   FS F      +V  D+  G+S+ FGFV +   E A++AI ++NG  L +R++
Sbjct:   59 SLYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEELNYSLVDGRPCRIMW----SQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFSAFGRILSCKVATDE-LGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREV 216          

HSP 2 Score: 85.5001 bits (210), Expect = 2.972e-16
Identity = 53/178 (29.78%), Postives = 89/178 (50.00%), Query Frame = 3
Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT-----SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDE 644
            ++++ N+HP + N  L + FS+ G +  CK+   +      +GFV Y    +A  AI  +NG  +  + + V    +   RE       +   NV+V +L+PEV +A     F  F   +   +  DQ+ G+SRGFGFV+F N E A +A+ ++N K +  +++    A K     DE
Sbjct:  147 NIFIKNLHPAIDNKALHDTFSAFGRILSCKVATDELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKRDRESKFEEMKANFTNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQE-GKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQKKRERLDE 323          

HSP 3 Score: 80.1073 bits (196), Expect = 1.249e-14
Identity = 55/174 (31.61%), Postives = 87/174 (50.00%), Query Frame = 3
Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA-------------YASSQREDTSGH--FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            +VYV N+ P+V NA  +E+F   GP+    L    +     +GFV++ +  SA  A+  +N + I GQ + V  A             Y S++ E  S +   N+FV +L   +    L   F  F T + ARVM D   G+S+GFGFV F + E+A  AI ++N + +  + +
Sbjct:  240 NVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVNLFVKNLDDSIDSEKLEEEFKPFGTITSARVMVDD-AGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPL 412          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: PABP_NEOFI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.972e-16
Identity = 55/193 (28.50%), Postives = 97/193 (50.26%), Query Frame = 3
Query:   51 HPSLLAAPQIEPILSGN--LPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            +P+  +AP++  + S +    P  +     S+YVG + P VT A+L E+FSS G +   ++    + +    Y +V+Y +      A+  LN   I G+P ++ W    SQR+     +G  NVF+ +L   + +  L   F+ F      +V  D+  G S+G+GFV +   E A +AI  +NG  L ++++
Sbjct:   23 NPAATSAPEVTAVESASPSATPSANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMW----SQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDE-FGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV 210          

HSP 2 Score: 77.411 bits (189), Expect = 8.094e-14
Identity = 55/198 (27.78%), Postives = 100/198 (50.51%), Query Frame = 3
Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR----EDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDE--KQVQIPKCCRA--YNGIS 692
            +V++ N+   + N  L + F++ G +  CK+ + +      YGFV Y    +A  AI  +NG  +  + + V    +   R    E+   +F NV++ ++  EVTD      F  F   + A +  DQ+ G+SRGFGFV+F   + AQ+A++++N K +  +++    A K     +E  KQ +  +  +A  Y G++
Sbjct:  141 NVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQE-GKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVN 337          
The following BLAST results are available for this feature:
BLAST of CX295688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
PABP_SCHPO7.822e-1731.40Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_LODEL7.822e-1732.14Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_CANAL1.022e-1632.14Polyadenylate-binding protein, cytoplasmic and nuc... [more]
ELAV2_PONAB1.742e-1634.71ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2... [more]
ELAV2_MOUSE1.742e-1634.71ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2... [more]
ELAV2_HUMAN1.742e-1634.71ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1... [more]
ELAV2_RAT2.276e-1634.50ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2... [more]
PABP_YARLI2.972e-1630.00Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_PICGU2.972e-1631.29Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_NEOFI2.972e-1628.50Polyadenylate-binding protein, cytoplasmic and nuc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05074H02SK DroRLeaf1 Citrus clementina cDNA clone C05074H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295688 ID=CX295688; Name=CX295688; organism=Citrus clementina; type=EST; length=700bp
GAGGGGCTGAAGCACAAACAATGATGCAGCAGCAGTCTTTATACCAATAC
CATCCCAGTCTCTTAGCTGCTCCTCAGATAGAGCCTATCTTGAGTGGAAA
TCTGCCTCCGCGATTTGATGCAAGTACATGCCGCAGCGTGTATGTTGGAA
ACATTCATCCTCAGGTTACAAATGCCCTGCTTCAAGAGGTTTTTTCAAGT
ACCGGTCCCCTTGAAGGATGCAAGCTCATTAAAAAAGATAAGTCATCCTA
TGGCTTTGTGGACTACTTTGATCGCAGATCAGCTGCCCTTGCAATTGTGA
CTCTTAATGGAAGGCACATATTTGGACAACCTATTAAAGTAAACTGGGCT
TATGCTAGCAGCCAGAGAGAGGACACATCAGGTCATTTCAACGTTTTTGT
TGGTGATCTTAGCCCTGAAGTTACAGATGCTACTTTGTTTGCGTGCTTCT
CTGTGTTTCCTACTTGTTCGGATGCAAGGGTTATGTGGGACCAAAAGACT
GGGCGTTCAAGGGGTTTTGGGTTTGTTTCTTTTCGGAATCAGGAGGATGC
CCAAAGTGCAATAAATGACTTAAATGGGAAGTGGCTTGGTAATAGACAGA
TTCGGTGCAACTGGGCTGCAAAAGGTGCTACCTCTGGTGATGAAAAGCAA
GTTCAGATTCCAAAGTGTTGTAGAGCTTACAATGGGATATCTGAAGATGG
back to top