CX295688

Overview
NameCX295688
Unique NameCX295688
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: PABP_PHANO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Phaeosphaeria nodorum GN=PAB1 PE=3 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 5.605e-15
Identity = 55/185 (29.73%), Postives = 89/185 (48.11%), Query Frame = 3
Query:   84 PILSGNLPPRFDAS-----TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            P  SG+ P    A+        S+YVG + P VT A+L E+FSS G +   ++    + +    Y +V+Y        A+  LN   I G+P ++ W    SQR+     +G  NVF+ +L   + +  L   F+ F      +V  D+  G S+G+GFV +   E A +AI  +NG  L  +++
Sbjct:   27 PAASGDAPTPTTAAQQAHQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEELNYTVIKGKPCRIMW----SQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDE-LGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKV 206          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: PABP_CRYNE (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Cryptococcus neoformans GN=PAB1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.605e-15
Identity = 52/174 (29.89%), Postives = 89/174 (51.15%), Query Frame = 3
Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS---SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---------------SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            +VY+ N+  +VT+A  +++    GP     L + +K     +GFV+Y +  SA  A+  LN + + G+ +    A   S+RE                 S   N++V +L  E  D  L A F  F T + ++VM D  +G SRGFGFV + + ++A  A++++NGK +G + +
Sbjct:  228 NVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRDD-SGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPL 400          

HSP 2 Score: 79.7221 bits (195), Expect = 1.631e-14
Identity = 49/163 (30.06%), Postives = 83/163 (50.92%), Query Frame = 3
Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            S+YVG + P VT A+L E+F+  GP+   ++    + +    Y +V+Y +      A+  LN   I GQ  ++ W    SQR+     +G  N+F+ +L   + +  L   F+ F      +V  D+  G+SRGF FV +   E A +AI  +NG  L ++++
Sbjct:   47 SLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHLNYSLIKGQSCRIMW----SQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKVGTDE-NGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKV 204          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: PAP1A_DICDI (Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum GN=pabpc1A PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.561e-15
Identity = 50/163 (30.67%), Postives = 85/163 (52.15%), Query Frame = 3
Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS----SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            S+YVG++ P+V+   L E+F+  G +   ++ +   +    SY +V+Y++   A  A+ TLN   I G+  ++ W    SQR+ +   SG  NVF+ +L   +    L+  FS F      +V+ D     S+GFGFV +  QE A  AI  +NG  +  +++
Sbjct:   11 SLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDTLNNTPIRGKACRIMW----SQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNS-SKGFGFVHYETQESADKAIAKVNGMMINGQKV 168          

HSP 2 Score: 76.2554 bits (186), Expect = 1.803e-13
Identity = 55/177 (31.07%), Postives = 89/177 (50.28%), Query Frame = 3
Query:  108 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR-EDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 623
            P    S   +V++ N+   + +  L + FS+ G +  CK++  D +S   +GFV Y  + SA  AI  +NG  I GQ + V    +S +R + T   F NVF  +LS +V    L      +   ++  +M D K G+S+GFGF +F + E A++ + + NGK    + I    A K
Sbjct:   90 PSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDK-GKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRAQK 265          

HSP 3 Score: 68.1662 bits (165), Expect = 4.910e-11
Identity = 42/167 (25.15%), Postives = 77/167 (46.11%), Query Frame = 3
Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGH--------FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            +V+  N+   V    L+E+    G +    ++  DK     +GF ++    +A   +   NG+   G+PI    A    +RE    H         N+++ ++   + +  L   FS F T + A VM D K   S+GFGFV +   ++A  A+ ++NG+ +G + +
Sbjct:  189 NVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRAQKKIEREAELKHTFETKYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPL 355          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: ELAV3_XENLA (ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.249e-14
Identity = 55/169 (32.54%), Postives = 85/169 (50.30%), Query Frame = 3
Query:   87 ILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 581
            IL+G      D+ T  ++ V  +   +T    + +F S G +E CKL++         YGFV+Y D   A  AI TLNG  +  + IKV++A  SS     +   N++V  L   +    +   FS +     +R++ DQ TG SRG GF+ F  + +A+ AI  LNG+
Sbjct:   21 ILNGTNGEADDSKT--NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDA---NLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 184          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.130e-14
Identity = 62/201 (30.85%), Postives = 97/201 (48.26%), Query Frame = 3
Query:  105 PPRFDA-STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT-------------------------SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 617
            PP+  + S    ++VGN+   V +A L ++F S G +E  ++I          +GFV          A    NG  + G+P++VN      +RED                          SG+  V+VG+LS  V D  L + FS      +ARV++D+ +GRS+GFGFV++ + ++ Q+AI  L+G  L  RQIR + A
Sbjct:   81 PPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGN-RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEA 280          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: ELAV1_HUMAN (ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.130e-14
Identity = 54/154 (35.06%), Postives = 82/154 (53.25%), Query Frame = 3
Query:  132 RSVYVGNIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNG 578
            R+  + N  PQ +T   L+ +FSS G +E  KLI+   +     YGFV+Y   + A  AI TLNG  +  + IKV++A  SS+    +   N+++  L   +T   +   FS F    ++RV+ DQ TG SRG  F+ F  + +A+ AI   NG
Sbjct:   19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDA---NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.130e-14
Identity = 49/175 (28.00%), Postives = 91/175 (52.00%), Query Frame = 3
Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS------YGFVDYFDRRSAALAIVTLNGRHIFGQ--PIKVNWAYASSQREDT----SGHFNVFVGDLSPEVTDATLFACF-SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 620
            ++++G++ P +    +Q++++S       K+++   SS      Y FV +    +A  A++  N   I G     K+NWA     + +        F++FVGDL P   D+ LF  F S++P+C+ A+++ D  TG SR +GFV F ++++ Q A+  + G     R +R + A+
Sbjct:   86 TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVAS 260          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: ELV1B_XENLA (ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-B PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.782e-14
Identity = 54/154 (35.06%), Postives = 82/154 (53.25%), Query Frame = 3
Query:  132 RSVYVGNIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNG 578
            R+  + N  PQ +T   L+ +FSS G +E  KLI+   +     YGFV+Y + + A  AI TLNG  +  + IKV++A  SS+   T    N+++  L   +T   +   F  F    ++RV+ DQ TG SRG  F+ F  + +A+ AI   NG
Sbjct:   19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSE---TIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 169          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: ELAV3_MOUSE (ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.633e-14
Identity = 52/149 (34.90%), Postives = 78/149 (52.35%), Query Frame = 3
Query:  150 NIHPQ-VTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 581
            N  PQ +T    + +F S G +E CKL++         YGFV+Y D   A  AI TLNG  +  + IKV++A  SS     +   N++V  L   ++   +   FS +     +R++ DQ TG SRG GF+ F  + +A+ AI  LNG+
Sbjct:   44 NYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: TSP1L_DANRE (tRNA selenocysteine 1-associated protein 1-like OS=Danio rerio GN=trnau1apl PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.745e-14
Identity = 56/171 (32.75%), Postives = 89/171 (52.05%), Query Frame = 3
Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLE-GCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQ--PIKVNWAYAS-SQREDTSGHFNVFVGDLSPEVTDATLFACF-SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL-NGKWLGNRQIRCNWA 617
            S+++G++ P +    +++ FS+ G    G K+I        + Y FV+  D  S    +  LNG+ + G   P K    YA+  +R +    F+VFVGDL+ EV D  L   F   FP+C  A+V+ D   G SRG+GFV F ++ + + A+ +  N   LG + IR + A
Sbjct:    7 SLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCVQRLNGKLVPGSNPPRKFKLNYATYGKRPEPGPEFSVFVGDLTSEVDDYQLHQFFLKKFPSCKGAKVVTD-PYGNSRGYGFVKFSDENEQKKALEEFQNASGLGGKPIRISIA 176          
The following BLAST results are available for this feature:
BLAST of CX295688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
PABP_PHANO5.605e-1529.73Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_CRYNE5.605e-1529.89Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PAP1A_DICDI9.561e-1530.67Polyadenylate-binding protein 1-A OS=Dictyostelium... [more]
ELAV3_XENLA1.249e-1432.54ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE... [more]
ROC1_ARATH2.130e-1430.85Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
ELAV1_HUMAN2.130e-1435.06ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1... [more]
CSX1_SCHPO2.130e-1428.00RNA-binding post-transcriptional regulator csx1 OS... [more]
ELV1B_XENLA2.782e-1435.06ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-... [more]
ELAV3_MOUSE3.633e-1434.90ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1... [more]
TSP1L_DANRE4.745e-1432.75tRNA selenocysteine 1-associated protein 1-like OS... [more]

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Properties
Property NameValue
Genbank descriptionC05074H02SK DroRLeaf1 Citrus clementina cDNA clone C05074H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295688 ID=CX295688; Name=CX295688; organism=Citrus clementina; type=EST; length=700bp
GAGGGGCTGAAGCACAAACAATGATGCAGCAGCAGTCTTTATACCAATAC
CATCCCAGTCTCTTAGCTGCTCCTCAGATAGAGCCTATCTTGAGTGGAAA
TCTGCCTCCGCGATTTGATGCAAGTACATGCCGCAGCGTGTATGTTGGAA
ACATTCATCCTCAGGTTACAAATGCCCTGCTTCAAGAGGTTTTTTCAAGT
ACCGGTCCCCTTGAAGGATGCAAGCTCATTAAAAAAGATAAGTCATCCTA
TGGCTTTGTGGACTACTTTGATCGCAGATCAGCTGCCCTTGCAATTGTGA
CTCTTAATGGAAGGCACATATTTGGACAACCTATTAAAGTAAACTGGGCT
TATGCTAGCAGCCAGAGAGAGGACACATCAGGTCATTTCAACGTTTTTGT
TGGTGATCTTAGCCCTGAAGTTACAGATGCTACTTTGTTTGCGTGCTTCT
CTGTGTTTCCTACTTGTTCGGATGCAAGGGTTATGTGGGACCAAAAGACT
GGGCGTTCAAGGGGTTTTGGGTTTGTTTCTTTTCGGAATCAGGAGGATGC
CCAAAGTGCAATAAATGACTTAAATGGGAAGTGGCTTGGTAATAGACAGA
TTCGGTGCAACTGGGCTGCAAAAGGTGCTACCTCTGGTGATGAAAAGCAA
GTTCAGATTCCAAAGTGTTGTAGAGCTTACAATGGGATATCTGAAGATGG
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