CX295688
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: TSAP1_HUMAN (tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens GN=TRNAU1AP PE=1 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 4.745e-14 Identity = 52/177 (29.38%), Postives = 98/177 (55.37%), Query Frame = 3 Query: 135 SVYVGNIHPQVTNALLQEVFSSTGP-LEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFG----QPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACF-SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK-WLGNRQIRCNWAAKGAT 632 S+++G++ P + + F++ G + K+I+ + Y FV++ D +A + +NG+ + G + K+N+A Q D S +++FVGDL+P+V D L+ F V+P+C +V+ DQ TG S+G+GFV F ++ + + A+ + G LG++ +R + A A+ Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYGKQ-PDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKAS 178
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: TSAP1_BOVIN (tRNA selenocysteine 1-associated protein 1 OS=Bos taurus GN=TRNAU1AP PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 4.745e-14 Identity = 52/177 (29.38%), Postives = 98/177 (55.37%), Query Frame = 3 Query: 135 SVYVGNIHPQVTNALLQEVFSSTGP-LEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFG----QPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACF-SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK-WLGNRQIRCNWAAKGAT 632 S+++G++ P + + F++ G + K+I+ + Y FV++ D +A + +NG+ + G + K+N+A Q D S +++FVGDL+P+V D L+ F V+P+C +V+ DQ TG S+G+GFV F ++ + + A+ + G LG++ +R + A A+ Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYGKQ-PDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAIGLGSKPVRLSVAIPKAS 178
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.197e-14 Identity = 54/172 (31.40%), Postives = 87/172 (50.58%), Query Frame = 3 Query: 138 VYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTS--------GHFN----VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 605 ++VGN+ +A L E+F G +E ++I + +GFV + A NG + G+ ++VN +RE++S G F+ V+VG+L+ V L FS DA+V++D+ +GRSRGFGFV++ + E+ +AI L+G L R IR Sbjct: 89 IFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIR 260
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: RBM39_PONAB (RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.197e-14 Identity = 56/192 (29.17%), Postives = 93/192 (48.44%), Query Frame = 3 Query: 69 APQIEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS----SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR---------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 605 +P EPI NL P + R+V+ + ++ L+E FS+ G + ++I S +V++ D S LAI L G+ + G PI V + A R + ++G ++VG L +T+ L F F ++M D +TGRS+G+GF++F + E A+ A+ LNG L R ++ Sbjct: 136 SPVREPI--DNLTP--EERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 322
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: RBM39_MOUSE (RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.197e-14 Identity = 56/192 (29.17%), Postives = 93/192 (48.44%), Query Frame = 3 Query: 69 APQIEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS----SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR---------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 605 +P EPI NL P + R+V+ + ++ L+E FS+ G + ++I S +V++ D S LAI L G+ + G PI V + A R + ++G ++VG L +T+ L F F ++M D +TGRS+G+GF++F + E A+ A+ LNG L R ++ Sbjct: 136 SPVREPI--DNLTP--EERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSRGIAYVEFVDVSSVRLAI-GLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 322
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: RBM39_HUMAN (RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2) HSP 1 Score: 77.7962 bits (190), Expect = 6.197e-14 Identity = 56/192 (29.17%), Postives = 93/192 (48.44%), Query Frame = 3 Query: 69 APQIEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS----SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR---------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 605 +P EPI NL P + R+V+ + ++ L+E FS+ G + ++I S +V++ D S LAI L G+ + G PI V + A R + ++G ++VG L +T+ L F F ++M D +TGRS+G+GF++F + E A+ A+ LNG L R ++ Sbjct: 136 SPVREPI--DNLTP--EERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 322
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: PABP_DROME (Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp PE=1 SV=3) HSP 1 Score: 77.7962 bits (190), Expect = 6.197e-14 Identity = 49/163 (30.06%), Postives = 87/163 (53.37%), Query Frame = 3 Query: 135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602 S+YVG++ V + L + FSS GP+ ++ I + Y +V++ A A+ T+N + +PI++ W SQR+ + SG NVF+ +L + + ++ FS F +V D+K G S+G+GFV F +E A ++I+ +NG L +++ Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNFDLVRNKPIRIMW----SQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEK-GNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKV 160 HSP 2 Score: 74.3294 bits (181), Expect = 6.852e-13 Identity = 48/169 (28.40%), Postives = 84/169 (49.70%), Query Frame = 3 Query: 108 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGH-----FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLG 590 P S +V++ N+ + N + + FS+ G + CK+ +K + YGFV + +A +I +NG + G+ + V +RE G NV+V + + + D L F + + +VM ++ G+S+GFGFV+F E A++A+ LNGK +G Sbjct: 82 PSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMG 249 HSP 3 Score: 69.707 bits (169), Expect = 1.688e-11 Identity = 47/175 (26.86%), Postives = 83/175 (47.43%), Query Frame = 3 Query: 135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFG----------------QPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602 +VYV N + L+E F G + K++ K+ +GFV + +A A+ LNG+ + Q +K + +R ++ N++V +L + D L FS + + A+VM D++ GRS+GFGFV F +A A+ +LNG+ +G++ + Sbjct: 184 NVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEE-GRSKGFGFVCFNAASEATCAVTELNGRVVGSKPL 357
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: ELAV3_HUMAN (ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3) HSP 1 Score: 77.7962 bits (190), Expect = 6.197e-14 Identity = 52/149 (34.90%), Postives = 78/149 (52.35%), Query Frame = 3 Query: 150 NIHPQ-VTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 581 N PQ +T + +F S G +E CKL++ YGFV+Y D A AI TLNG + + IKV++A SS + N++V L ++ + FS + +R++ DQ TG SRG GF+ F + +A+ AI LNG+ Sbjct: 44 NYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: PAP1B_DICDI (Polyadenylate-binding protein 1-B OS=Dictyostelium discoideum GN=pabpc1B PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.057e-13 Identity = 47/154 (30.52%), Postives = 81/154 (52.60%), Query Frame = 3 Query: 135 SVYVGNIHPQVTNALLQEVFSSTG-----PLEGCKLIKKDKS-SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNG 578 S+YVG++ V +L E+FS G + C+ +S Y +V++F+ A A+ TLN + G+P ++ W+Y + T+ N+FV +L V +A L+ FS F +V +++ G S+G+G+V F + A+ AI +NG Sbjct: 185 SLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAERALDTLNYTLVHGKPCRIMWSYRDPTKRKTNVG-NIFVKNLEKGVDNAMLYDTFSSFGNILSCKVEFEK--GISKGYGYVHFETNDSAEKAIEKVNG 335
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: PABP_NEUCR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neurospora crassa GN=pab-1 PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.057e-13 Identity = 46/160 (28.75%), Postives = 77/160 (48.12%), Query Frame = 3 Query: 135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602 S+YVG + P VT A+L E+FS G + ++ + + Y +V+Y A+ LN I G+P ++ W+ T G N+F+ +L + + L F+ F +V D+ G S+G+GFV + E A AI +NG L +++ Sbjct: 61 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEELNYTLIKGRPCRIMWSQRDPALRKT-GAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEH-GNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKV 218 HSP 2 Score: 76.2554 bits (186), Expect = 1.803e-13 Identity = 48/157 (30.57%), Postives = 84/157 (53.50%), Query Frame = 3 Query: 135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR----EDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 581 ++++ N+ + N L + F++ G + CK+ + + + YGFV Y +A+ AI +NG + + + V R E+ +F NV+V +++ EVTD F+ F + + + DQ+ G+SRGFGFV+F E A A+++LNGK Sbjct: 149 NIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQE-GKSRGFGFVNFTTHEAAAQAVDELNGK 304 HSP 3 Score: 67.781 bits (164), Expect = 6.413e-11 Identity = 52/214 (24.30%), Postives = 90/214 (42.06%), Query Frame = 3 Query: 135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGH---------------FNVFVGDLSPEVTDATLFACFSVFPTCSDARVM----------------------------------------WDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602 +VYV NI+ +VT+ +E+F+ G + L + + +GFV++ +AA A+ LNG+ GQ + V A +RE+ N+++ +L +V D L A FS + + A+VM D+K G+S+GFGFV F N +DA A+ ++N + + + + Sbjct: 242 NVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGDDVDDDKLRAMFSEYGPITSAKVMRDSLIEGSEEKDEKDKENKKEGETKEEEQNEGSEKKTEKKGDRKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPL 455 The following BLAST results are available for this feature:
BLAST of CX295688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 123
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Sequences
The
following sequences are available for this feature:
EST sequence >CX295688 ID=CX295688; Name=CX295688; organism=Citrus clementina; type=EST; length=700bpback to top |