CX295688

Overview
NameCX295688
Unique NameCX295688
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: TSAP1_HUMAN (tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens GN=TRNAU1AP PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.745e-14
Identity = 52/177 (29.38%), Postives = 98/177 (55.37%), Query Frame = 3
Query:  135 SVYVGNIHPQVTNALLQEVFSSTGP-LEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFG----QPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACF-SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK-WLGNRQIRCNWAAKGAT 632
            S+++G++ P +    +   F++ G  +   K+I+       + Y FV++ D  +A   +  +NG+ + G    +  K+N+A    Q  D S  +++FVGDL+P+V D  L+  F  V+P+C   +V+ DQ TG S+G+GFV F ++ + + A+ +  G   LG++ +R + A   A+
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYGKQ-PDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKAS 178          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: TSAP1_BOVIN (tRNA selenocysteine 1-associated protein 1 OS=Bos taurus GN=TRNAU1AP PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.745e-14
Identity = 52/177 (29.38%), Postives = 98/177 (55.37%), Query Frame = 3
Query:  135 SVYVGNIHPQVTNALLQEVFSSTGP-LEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFG----QPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACF-SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK-WLGNRQIRCNWAAKGAT 632
            S+++G++ P +    +   F++ G  +   K+I+       + Y FV++ D  +A   +  +NG+ + G    +  K+N+A    Q  D S  +++FVGDL+P+V D  L+  F  V+P+C   +V+ DQ TG S+G+GFV F ++ + + A+ +  G   LG++ +R + A   A+
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYGKQ-PDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAIGLGSKPVRLSVAIPKAS 178          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.197e-14
Identity = 54/172 (31.40%), Postives = 87/172 (50.58%), Query Frame = 3
Query:  138 VYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTS--------GHFN----VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 605
            ++VGN+     +A L E+F   G +E  ++I    +     +GFV    +     A    NG  + G+ ++VN      +RE++S        G F+    V+VG+L+  V    L   FS      DA+V++D+ +GRSRGFGFV++ + E+  +AI  L+G  L  R IR
Sbjct:   89 IFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIR 260          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: RBM39_PONAB (RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.197e-14
Identity = 56/192 (29.17%), Postives = 93/192 (48.44%), Query Frame = 3
Query:   69 APQIEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS----SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR---------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 605
            +P  EPI   NL P  +    R+V+   +  ++    L+E FS+ G +   ++I    S       +V++ D  S  LAI  L G+ + G PI V  + A   R         + ++G   ++VG L   +T+  L   F  F      ++M D +TGRS+G+GF++F + E A+ A+  LNG  L  R ++
Sbjct:  136 SPVREPI--DNLTP--EERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 322          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: RBM39_MOUSE (RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.197e-14
Identity = 56/192 (29.17%), Postives = 93/192 (48.44%), Query Frame = 3
Query:   69 APQIEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS----SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR---------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 605
            +P  EPI   NL P  +    R+V+   +  ++    L+E FS+ G +   ++I    S       +V++ D  S  LAI  L G+ + G PI V  + A   R         + ++G   ++VG L   +T+  L   F  F      ++M D +TGRS+G+GF++F + E A+ A+  LNG  L  R ++
Sbjct:  136 SPVREPI--DNLTP--EERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSRGIAYVEFVDVSSVRLAI-GLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 322          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: RBM39_HUMAN (RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.197e-14
Identity = 56/192 (29.17%), Postives = 93/192 (48.44%), Query Frame = 3
Query:   69 APQIEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS----SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR---------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 605
            +P  EPI   NL P  +    R+V+   +  ++    L+E FS+ G +   ++I    S       +V++ D  S  LAI  L G+ + G PI V  + A   R         + ++G   ++VG L   +T+  L   F  F      ++M D +TGRS+G+GF++F + E A+ A+  LNG  L  R ++
Sbjct:  136 SPVREPI--DNLTP--EERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 322          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: PABP_DROME (Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp PE=1 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 6.197e-14
Identity = 49/163 (30.06%), Postives = 87/163 (53.37%), Query Frame = 3
Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            S+YVG++   V  + L + FSS GP+   ++    I +    Y +V++     A  A+ T+N   +  +PI++ W    SQR+ +   SG  NVF+ +L   + +  ++  FS F      +V  D+K G S+G+GFV F  +E A ++I+ +NG  L  +++
Sbjct:    3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNFDLVRNKPIRIMW----SQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEK-GNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKV 160          

HSP 2 Score: 74.3294 bits (181), Expect = 6.852e-13
Identity = 48/169 (28.40%), Postives = 84/169 (49.70%), Query Frame = 3
Query:  108 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGH-----FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLG 590
            P    S   +V++ N+   + N  + + FS+ G +  CK+   +K +   YGFV +    +A  +I  +NG  + G+ + V       +RE   G       NV+V + + +  D  L   F  +   +  +VM  ++ G+S+GFGFV+F   E A++A+  LNGK +G
Sbjct:   82 PSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMG 249          

HSP 3 Score: 69.707 bits (169), Expect = 1.688e-11
Identity = 47/175 (26.86%), Postives = 83/175 (47.43%), Query Frame = 3
Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFG----------------QPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            +VYV N      +  L+E F   G +   K++ K+      +GFV +    +A  A+  LNG+ +                  Q +K  +     +R ++    N++V +L   + D  L   FS +   + A+VM D++ GRS+GFGFV F    +A  A+ +LNG+ +G++ +
Sbjct:  184 NVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEE-GRSKGFGFVCFNAASEATCAVTELNGRVVGSKPL 357          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: ELAV3_HUMAN (ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 6.197e-14
Identity = 52/149 (34.90%), Postives = 78/149 (52.35%), Query Frame = 3
Query:  150 NIHPQ-VTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 581
            N  PQ +T    + +F S G +E CKL++         YGFV+Y D   A  AI TLNG  +  + IKV++A  SS     +   N++V  L   ++   +   FS +     +R++ DQ TG SRG GF+ F  + +A+ AI  LNG+
Sbjct:   44 NYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: PAP1B_DICDI (Polyadenylate-binding protein 1-B OS=Dictyostelium discoideum GN=pabpc1B PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.057e-13
Identity = 47/154 (30.52%), Postives = 81/154 (52.60%), Query Frame = 3
Query:  135 SVYVGNIHPQVTNALLQEVFSSTG-----PLEGCKLIKKDKS-SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNG 578
            S+YVG++   V   +L E+FS  G      +  C+     +S  Y +V++F+   A  A+ TLN   + G+P ++ W+Y    +  T+   N+FV +L   V +A L+  FS F      +V +++  G S+G+G+V F   + A+ AI  +NG
Sbjct:  185 SLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAERALDTLNYTLVHGKPCRIMWSYRDPTKRKTNVG-NIFVKNLEKGVDNAMLYDTFSSFGNILSCKVEFEK--GISKGYGYVHFETNDSAEKAIEKVNG 335          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: PABP_NEUCR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neurospora crassa GN=pab-1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.057e-13
Identity = 46/160 (28.75%), Postives = 77/160 (48.12%), Query Frame = 3
Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            S+YVG + P VT A+L E+FS  G +   ++    + +    Y +V+Y        A+  LN   I G+P ++ W+        T G  N+F+ +L   + +  L   F+ F      +V  D+  G S+G+GFV +   E A  AI  +NG  L  +++
Sbjct:   61 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEELNYTLIKGRPCRIMWSQRDPALRKT-GAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEH-GNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKV 218          

HSP 2 Score: 76.2554 bits (186), Expect = 1.803e-13
Identity = 48/157 (30.57%), Postives = 84/157 (53.50%), Query Frame = 3
Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR----EDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 581
            ++++ N+   + N  L + F++ G +  CK+ + +  +   YGFV Y    +A+ AI  +NG  +  + + V        R    E+   +F NV+V +++ EVTD      F+ F   + + +  DQ+ G+SRGFGFV+F   E A  A+++LNGK
Sbjct:  149 NIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQE-GKSRGFGFVNFTTHEAAAQAVDELNGK 304          

HSP 3 Score: 67.781 bits (164), Expect = 6.413e-11
Identity = 52/214 (24.30%), Postives = 90/214 (42.06%), Query Frame = 3
Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGH---------------FNVFVGDLSPEVTDATLFACFSVFPTCSDARVM----------------------------------------WDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            +VYV NI+ +VT+   +E+F+  G +    L +  +     +GFV++    +AA A+  LNG+   GQ + V  A    +RE+                    N+++ +L  +V D  L A FS +   + A+VM                                         D+K G+S+GFGFV F N +DA  A+ ++N + +  + +
Sbjct:  242 NVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGDDVDDDKLRAMFSEYGPITSAKVMRDSLIEGSEEKDEKDKENKKEGETKEEEQNEGSEKKTEKKGDRKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPL 455          
The following BLAST results are available for this feature:
BLAST of CX295688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
TSAP1_HUMAN4.745e-1429.38tRNA selenocysteine 1-associated protein 1 OS=Homo... [more]
TSAP1_BOVIN4.745e-1429.38tRNA selenocysteine 1-associated protein 1 OS=Bos ... [more]
ROC1_NICSY6.197e-1431.4029 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
RBM39_PONAB6.197e-1429.17RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE... [more]
RBM39_MOUSE6.197e-1429.17RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE... [more]
RBM39_HUMAN6.197e-1429.17RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE... [more]
PABP_DROME6.197e-1430.06Polyadenylate-binding protein OS=Drosophila melano... [more]
ELAV3_HUMAN6.197e-1434.90ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1... [more]
PAP1B_DICDI1.057e-1330.52Polyadenylate-binding protein 1-B OS=Dictyostelium... [more]
PABP_NEUCR1.057e-1328.75Polyadenylate-binding protein, cytoplasmic and nuc... [more]

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Properties
Property NameValue
Genbank descriptionC05074H02SK DroRLeaf1 Citrus clementina cDNA clone C05074H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295688 ID=CX295688; Name=CX295688; organism=Citrus clementina; type=EST; length=700bp
GAGGGGCTGAAGCACAAACAATGATGCAGCAGCAGTCTTTATACCAATAC
CATCCCAGTCTCTTAGCTGCTCCTCAGATAGAGCCTATCTTGAGTGGAAA
TCTGCCTCCGCGATTTGATGCAAGTACATGCCGCAGCGTGTATGTTGGAA
ACATTCATCCTCAGGTTACAAATGCCCTGCTTCAAGAGGTTTTTTCAAGT
ACCGGTCCCCTTGAAGGATGCAAGCTCATTAAAAAAGATAAGTCATCCTA
TGGCTTTGTGGACTACTTTGATCGCAGATCAGCTGCCCTTGCAATTGTGA
CTCTTAATGGAAGGCACATATTTGGACAACCTATTAAAGTAAACTGGGCT
TATGCTAGCAGCCAGAGAGAGGACACATCAGGTCATTTCAACGTTTTTGT
TGGTGATCTTAGCCCTGAAGTTACAGATGCTACTTTGTTTGCGTGCTTCT
CTGTGTTTCCTACTTGTTCGGATGCAAGGGTTATGTGGGACCAAAAGACT
GGGCGTTCAAGGGGTTTTGGGTTTGTTTCTTTTCGGAATCAGGAGGATGC
CCAAAGTGCAATAAATGACTTAAATGGGAAGTGGCTTGGTAATAGACAGA
TTCGGTGCAACTGGGCTGCAAAAGGTGCTACCTCTGGTGATGAAAAGCAA
GTTCAGATTCCAAAGTGTTGTAGAGCTTACAATGGGATATCTGAAGATGG
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