CX295688

Overview
NameCX295688
Unique NameCX295688
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: TSAP1_RAT (tRNA selenocysteine 1-associated protein 1 OS=Rattus norvegicus GN=Trnau1ap PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.381e-13
Identity = 52/177 (29.38%), Postives = 97/177 (54.80%), Query Frame = 3
Query:  135 SVYVGNIHPQVTNALLQEVFSSTGP-LEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFG----QPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACF-SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK-WLGNRQIRCNWAAKGAT 632
            S+++G++ P +    +   F++ G  +   K+I+       + Y FV++ D  +A   +  +NG+ + G    +  K+N+A    Q  D S  +++FVGDL+P+V D  L+  F  V+P+C   +V+ DQ TG S+G+GFV F ++ + + A+ +  G   LG + +R + A   A+
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYGKQ-PDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKAS 178          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: TSAP1_PONAB (tRNA selenocysteine 1-associated protein 1 OS=Pongo abelii GN=TRNAU1AP PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.381e-13
Identity = 51/177 (28.81%), Postives = 97/177 (54.80%), Query Frame = 3
Query:  135 SVYVGNIHPQVTNALLQEVFSSTGP-LEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFG----QPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACF-SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK-WLGNRQIRCNWAAKGAT 632
            S+++G++ P +    +   F++ G  +   K+I+       + Y FV++ D  +A   +  +NG+ + G    +  K+N+     Q  D S  +++FVGDL+P+V D  L+  F  V+P+C   +V+ DQ TG S+G+GFV F ++ + + A+ +  G   LG++ +R + A   A+
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYVTYGKQ-PDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKAS 178          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.381e-13
Identity = 55/169 (32.54%), Postives = 88/169 (52.07%), Query Frame = 3
Query:  138 VYVGNIHPQVTNALLQEVFSSTGPLEGCKLI---KKDKS-SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGH-----FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 617
            ++VGN+   V +  L  +F   G +E  ++I   + D+S  +GFV       A  A+   N   + G+ + VN A     R + +       F V+VG+L  +V +  L   FS      +ARV++D++TGRSRGFGFV+  + ++   AI+ L+G+ L  R IR N A
Sbjct:  152 LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVA 320          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.381e-13
Identity = 65/230 (28.26%), Postives = 101/230 (43.91%), Query Frame = 3
Query:   33 QSLYQYHPSLLAAPQIEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTS-------------------------------GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 617
            +S +    +L    Q+E  +     PRF       ++VGN+   V +A L  +F   G +E  ++I    +     +GFV    +     A    NG  I G+ I+VN   A ++RE++S                                   V+VG+LS  V D  L   FS      DA+V++D+ +GRSRGFGFV++ + ++   AI+ LNG  L  R IR + A
Sbjct:   56 ESSFSTRVALSGFDQLEDDVEVAEQPRFSEDL--KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAA 283          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.381e-13
Identity = 56/169 (33.14%), Postives = 86/169 (50.89%), Query Frame = 3
Query:  138 VYVGNIHPQVTNALLQEVFSSTGPLEGCKLI---KKDKS-SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQRE-----DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 617
            ++VGN+   V +  L  +F + G +E  ++I   + D+S  +GFV       A  A+  LNG  + G+ + VN A      E     D      V+VG+L  +V  + L   FS       ARV+ D++TGRSRGFGFV+  ++ +   AI  L+G+ L  R +R N A
Sbjct:   57 LFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVA 225          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: ELAV1_XENTR (ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.381e-13
Identity = 53/154 (34.42%), Postives = 81/154 (52.60%), Query Frame = 3
Query:  132 RSVYVGNIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNG 578
            R+  + N  PQ +T   L+ +FSS G +E  KLI+   +     YGFV+Y + + A  AI TLNG  +  + IKV+ A  SS+    +   N+++  L   +T   +   F  F    ++RV+ DQ TG SRG  F+ F  + +A+ AI   NG
Sbjct:   19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSVARPSSESIKDA---NLYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 169          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: ELAV1_MOUSE (ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.381e-13
Identity = 53/154 (34.42%), Postives = 80/154 (51.95%), Query Frame = 3
Query:  132 RSVYVGNIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNG 578
            R+  + N  PQ +T   L+ +FSS G +E  KLI+   +     YGFV+Y   + A  AI TLNG  +  + IKV++A  SS   +     N+++  L   +T   +   FS F    ++RV+ DQ TG SRG  F+ F  + +A+ AI    G
Sbjct:   19 RTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPSS---EVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFIG 169          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: PABP_USTMA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago maydis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.803e-13
Identity = 55/192 (28.65%), Postives = 94/192 (48.96%), Query Frame = 3
Query:   54 PSLLAAPQIEPILSGNLPPR--FDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            P+   AP  E    GN   R   DA+   S+YVG + P VT A+L E+FS  G +   ++    + +    Y +V++ +      A+  LN   I  +P ++ W    SQR+     +G  N+F+ +L   + +  L   F+ F      +V  ++ TG S G+GFV +   E A++AI  +NG  L ++++
Sbjct:   19 PASTPAPAAEQPAVGNGEQRNNADAANNTSLYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVTRRSLGYAYVNFLNAADGERAMEQLNYSLIRNRPCRIMW----SQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNILSCKVATNE-TG-SLGYGFVHYETAEAAEAAIKHVNGMLLNDKKV 204          

HSP 2 Score: 73.559 bits (179), Expect = 1.169e-12
Identity = 47/157 (29.94%), Postives = 82/157 (52.23%), Query Frame = 3
Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR----EDTSGHF-NVFVGDLSPEVTD---ATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLN 575
            ++++ N+   + N  L + F++ G +  CK+   +  S  YGFV Y    +A  AI  +NG  +  + + V       +R    E+T  +F NV+  ++ PEVTD     LF  F    +C    V+   + G+S+GFGFV+F +  +AQ A+++L+
Sbjct:  136 NIFIKNLDAGIDNKALHDTFAAFGNILSCKVATNETGSLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHIPRKERQAKIEETRANFTNVYAKNVDPEVTDDEFEKLFTKFGKITSC----VLQRDEDGKSKGFGFVNFEDHNEAQKAVDELH 288          

HSP 3 Score: 72.0182 bits (175), Expect = 3.401e-12
Identity = 50/193 (25.91%), Postives = 89/193 (46.11%), Query Frame = 3
Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGH---------------FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQVQI 659
            +VY  N+ P+VT+   +++F+  G +  C L + +      +GFV++ D   A  A+  L+     GQ + V  A   S+RE+                    N+++ ++     D  L   F+ F   +  ++M    +G SRGFGFV +   E+A  A++++NGK L NR +    A +      + + QI
Sbjct:  228 NVYAKNVDPEVTDDEFEKLFTKFGKITSCVLQRDEDGKSKGFGFVNFEDHNEAQKAVDELHDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDERLREEFAPFGAITSCKIM-RAPSGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYVALAQRKDVRRQQLEAQI 419          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: PABP_CHAGB (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Chaetomium globosum GN=PAB1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.803e-13
Identity = 49/163 (30.06%), Postives = 79/163 (48.47%), Query Frame = 3
Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            S+YVG + P VT A+L E+FS  G +   ++    I +    Y +V+Y        A+  LN   I G+P ++ W    SQR+     +G  NVF+ +L   + +  L   F+ F      +V  D+  G S+G+GFV +   E A  AI  +N   L  +++
Sbjct:   66 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKALEELNYTLIKGRPCRIMW----SQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKV 223          

HSP 2 Score: 71.633 bits (174), Expect = 4.441e-12
Identity = 46/157 (29.30%), Postives = 81/157 (51.59%), Query Frame = 3
Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR----EDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 581
            +V++ N+   + N  L + F++ G +  CK+ + +  +   YGFV Y    +AA AI  +N   +  + + V +      R    E+   +F N++V ++S E TD      F+ +   + + +  D + G+SRGFGFV+F   E A  A+ +LNGK
Sbjct:  154 NVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSE-GKSRGFGFVNFTTHECAAKAVEELNGK 309          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: ELAV3_XENTR (ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl3 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.803e-13
Identity = 55/170 (32.35%), Postives = 85/170 (50.00%), Query Frame = 3
Query:   87 ILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGR-SRGFGFVSFRNQEDAQSAINDLNGK 581
            IL+G      D+ T  ++ V  +   +T    + +F S G +E CKL++         YGFV+Y D   A  AI TLNG  +  + IKV++A  SS    +    N++V  L   +    +   FS +     +R++ DQ TG  SRG GF+ F  + +A+ AI  LNG+
Sbjct:   22 ILNGTNGAADDSKT--NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSA---SIRDANLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGSVSRGVGFIRFDKRIEAEEAIKGLNGQ 186          
The following BLAST results are available for this feature:
BLAST of CX295688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
TSAP1_RAT1.381e-1329.38tRNA selenocysteine 1-associated protein 1 OS=Ratt... [more]
TSAP1_PONAB1.381e-1328.81tRNA selenocysteine 1-associated protein 1 OS=Pong... [more]
ROC3_ARATH1.381e-1332.5431 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
ROC2_NICSY1.381e-1328.2629 kDa ribonucleoprotein B, chloroplastic OS=Nicot... [more]
ROC1_SPIOL1.381e-1333.1428 kDa ribonucleoprotein, chloroplastic OS=Spinaci... [more]
ELAV1_XENTR1.381e-1334.42ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl... [more]
ELAV1_MOUSE1.381e-1334.42ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1... [more]
PABP_USTMA1.803e-1328.65Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_CHAGB1.803e-1330.06Polyadenylate-binding protein, cytoplasmic and nuc... [more]
ELAV3_XENTR1.803e-1332.35ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl... [more]

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Properties
Property NameValue
Genbank descriptionC05074H02SK DroRLeaf1 Citrus clementina cDNA clone C05074H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295688 ID=CX295688; Name=CX295688; organism=Citrus clementina; type=EST; length=700bp
GAGGGGCTGAAGCACAAACAATGATGCAGCAGCAGTCTTTATACCAATAC
CATCCCAGTCTCTTAGCTGCTCCTCAGATAGAGCCTATCTTGAGTGGAAA
TCTGCCTCCGCGATTTGATGCAAGTACATGCCGCAGCGTGTATGTTGGAA
ACATTCATCCTCAGGTTACAAATGCCCTGCTTCAAGAGGTTTTTTCAAGT
ACCGGTCCCCTTGAAGGATGCAAGCTCATTAAAAAAGATAAGTCATCCTA
TGGCTTTGTGGACTACTTTGATCGCAGATCAGCTGCCCTTGCAATTGTGA
CTCTTAATGGAAGGCACATATTTGGACAACCTATTAAAGTAAACTGGGCT
TATGCTAGCAGCCAGAGAGAGGACACATCAGGTCATTTCAACGTTTTTGT
TGGTGATCTTAGCCCTGAAGTTACAGATGCTACTTTGTTTGCGTGCTTCT
CTGTGTTTCCTACTTGTTCGGATGCAAGGGTTATGTGGGACCAAAAGACT
GGGCGTTCAAGGGGTTTTGGGTTTGTTTCTTTTCGGAATCAGGAGGATGC
CCAAAGTGCAATAAATGACTTAAATGGGAAGTGGCTTGGTAATAGACAGA
TTCGGTGCAACTGGGCTGCAAAAGGTGCTACCTCTGGTGATGAAAAGCAA
GTTCAGATTCCAAAGTGTTGTAGAGCTTACAATGGGATATCTGAAGATGG
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