CX295688
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: TSAP1_RAT (tRNA selenocysteine 1-associated protein 1 OS=Rattus norvegicus GN=Trnau1ap PE=1 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.381e-13 Identity = 52/177 (29.38%), Postives = 97/177 (54.80%), Query Frame = 3 Query: 135 SVYVGNIHPQVTNALLQEVFSSTGP-LEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFG----QPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACF-SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK-WLGNRQIRCNWAAKGAT 632 S+++G++ P + + F++ G + K+I+ + Y FV++ D +A + +NG+ + G + K+N+A Q D S +++FVGDL+P+V D L+ F V+P+C +V+ DQ TG S+G+GFV F ++ + + A+ + G LG + +R + A A+ Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYGKQ-PDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKAS 178
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: TSAP1_PONAB (tRNA selenocysteine 1-associated protein 1 OS=Pongo abelii GN=TRNAU1AP PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.381e-13 Identity = 51/177 (28.81%), Postives = 97/177 (54.80%), Query Frame = 3 Query: 135 SVYVGNIHPQVTNALLQEVFSSTGP-LEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFG----QPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACF-SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK-WLGNRQIRCNWAAKGAT 632 S+++G++ P + + F++ G + K+I+ + Y FV++ D +A + +NG+ + G + K+N+ Q D S +++FVGDL+P+V D L+ F V+P+C +V+ DQ TG S+G+GFV F ++ + + A+ + G LG++ +R + A A+ Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYVTYGKQ-PDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKAS 178
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.381e-13 Identity = 55/169 (32.54%), Postives = 88/169 (52.07%), Query Frame = 3 Query: 138 VYVGNIHPQVTNALLQEVFSSTGPLEGCKLI---KKDKS-SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGH-----FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 617 ++VGN+ V + L +F G +E ++I + D+S +GFV A A+ N + G+ + VN A R + + F V+VG+L +V + L FS +ARV++D++TGRSRGFGFV+ + ++ AI+ L+G+ L R IR N A Sbjct: 152 LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVA 320
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.381e-13 Identity = 65/230 (28.26%), Postives = 101/230 (43.91%), Query Frame = 3 Query: 33 QSLYQYHPSLLAAPQIEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTS-------------------------------GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 617 +S + +L Q+E + PRF ++VGN+ V +A L +F G +E ++I + +GFV + A NG I G+ I+VN A ++RE++S V+VG+LS V D L FS DA+V++D+ +GRSRGFGFV++ + ++ AI+ LNG L R IR + A Sbjct: 56 ESSFSTRVALSGFDQLEDDVEVAEQPRFSEDL--KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAA 283
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.381e-13 Identity = 56/169 (33.14%), Postives = 86/169 (50.89%), Query Frame = 3 Query: 138 VYVGNIHPQVTNALLQEVFSSTGPLEGCKLI---KKDKS-SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQRE-----DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 617 ++VGN+ V + L +F + G +E ++I + D+S +GFV A A+ LNG + G+ + VN A E D V+VG+L +V + L FS ARV+ D++TGRSRGFGFV+ ++ + AI L+G+ L R +R N A Sbjct: 57 LFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVA 225
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: ELAV1_XENTR (ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl1 PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.381e-13 Identity = 53/154 (34.42%), Postives = 81/154 (52.60%), Query Frame = 3 Query: 132 RSVYVGNIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNG 578 R+ + N PQ +T L+ +FSS G +E KLI+ + YGFV+Y + + A AI TLNG + + IKV+ A SS+ + N+++ L +T + F F ++RV+ DQ TG SRG F+ F + +A+ AI NG Sbjct: 19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSVARPSSESIKDA---NLYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 169
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: ELAV1_MOUSE (ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.381e-13 Identity = 53/154 (34.42%), Postives = 80/154 (51.95%), Query Frame = 3 Query: 132 RSVYVGNIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNG 578 R+ + N PQ +T L+ +FSS G +E KLI+ + YGFV+Y + A AI TLNG + + IKV++A SS + N+++ L +T + FS F ++RV+ DQ TG SRG F+ F + +A+ AI G Sbjct: 19 RTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPSS---EVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFIG 169
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: PABP_USTMA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago maydis GN=PAB1 PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.803e-13 Identity = 55/192 (28.65%), Postives = 94/192 (48.96%), Query Frame = 3 Query: 54 PSLLAAPQIEPILSGNLPPR--FDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602 P+ AP E GN R DA+ S+YVG + P VT A+L E+FS G + ++ + + Y +V++ + A+ LN I +P ++ W SQR+ +G N+F+ +L + + L F+ F +V ++ TG S G+GFV + E A++AI +NG L ++++ Sbjct: 19 PASTPAPAAEQPAVGNGEQRNNADAANNTSLYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVTRRSLGYAYVNFLNAADGERAMEQLNYSLIRNRPCRIMW----SQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNILSCKVATNE-TG-SLGYGFVHYETAEAAEAAIKHVNGMLLNDKKV 204 HSP 2 Score: 73.559 bits (179), Expect = 1.169e-12 Identity = 47/157 (29.94%), Postives = 82/157 (52.23%), Query Frame = 3 Query: 135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR----EDTSGHF-NVFVGDLSPEVTD---ATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLN 575 ++++ N+ + N L + F++ G + CK+ + S YGFV Y +A AI +NG + + + V +R E+T +F NV+ ++ PEVTD LF F +C V+ + G+S+GFGFV+F + +AQ A+++L+ Sbjct: 136 NIFIKNLDAGIDNKALHDTFAAFGNILSCKVATNETGSLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHIPRKERQAKIEETRANFTNVYAKNVDPEVTDDEFEKLFTKFGKITSC----VLQRDEDGKSKGFGFVNFEDHNEAQKAVDELH 288 HSP 3 Score: 72.0182 bits (175), Expect = 3.401e-12 Identity = 50/193 (25.91%), Postives = 89/193 (46.11%), Query Frame = 3 Query: 135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGH---------------FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQVQI 659 +VY N+ P+VT+ +++F+ G + C L + + +GFV++ D A A+ L+ GQ + V A S+RE+ N+++ ++ D L F+ F + ++M +G SRGFGFV + E+A A++++NGK L NR + A + + + QI Sbjct: 228 NVYAKNVDPEVTDDEFEKLFTKFGKITSCVLQRDEDGKSKGFGFVNFEDHNEAQKAVDELHDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDERLREEFAPFGAITSCKIM-RAPSGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYVALAQRKDVRRQQLEAQI 419
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: PABP_CHAGB (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Chaetomium globosum GN=PAB1 PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.803e-13 Identity = 49/163 (30.06%), Postives = 79/163 (48.47%), Query Frame = 3 Query: 135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602 S+YVG + P VT A+L E+FS G + ++ I + Y +V+Y A+ LN I G+P ++ W SQR+ +G NVF+ +L + + L F+ F +V D+ G S+G+GFV + E A AI +N L +++ Sbjct: 66 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKALEELNYTLIKGRPCRIMW----SQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKV 223 HSP 2 Score: 71.633 bits (174), Expect = 4.441e-12 Identity = 46/157 (29.30%), Postives = 81/157 (51.59%), Query Frame = 3 Query: 135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR----EDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 581 +V++ N+ + N L + F++ G + CK+ + + + YGFV Y +AA AI +N + + + V + R E+ +F N++V ++S E TD F+ + + + + D + G+SRGFGFV+F E A A+ +LNGK Sbjct: 154 NVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSE-GKSRGFGFVNFTTHECAAKAVEELNGK 309
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: ELAV3_XENTR (ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl3 PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.803e-13 Identity = 55/170 (32.35%), Postives = 85/170 (50.00%), Query Frame = 3 Query: 87 ILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGR-SRGFGFVSFRNQEDAQSAINDLNGK 581 IL+G D+ T ++ V + +T + +F S G +E CKL++ YGFV+Y D A AI TLNG + + IKV++A SS + N++V L + + FS + +R++ DQ TG SRG GF+ F + +A+ AI LNG+ Sbjct: 22 ILNGTNGAADDSKT--NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSA---SIRDANLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGSVSRGVGFIRFDKRIEAEEAIKGLNGQ 186 The following BLAST results are available for this feature:
BLAST of CX295688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 123
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Sequences
The
following sequences are available for this feature:
EST sequence >CX295688 ID=CX295688; Name=CX295688; organism=Citrus clementina; type=EST; length=700bpback to top |