CX295688 | Citrus Genome Database

Overview


Name	CX295688
Unique Name	CX295688
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	700

Libraries


Library Name	Type
DroRLeaf1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

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BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.355e-13
Identity = 66/230 (28.70%), Postives = 101/230 (43.91%), Query Frame = 3

Query:   33 QSLYQYHPSLLAAPQIEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTS-------------------------------GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 617
            +S +    +L    Q+E  +     PRF       ++VGN+   V +A L  +F   G +E  ++I    S     +GFV    +     A    NG  I G+ I+VN   A ++RE++S                                   V+VG+LS  V D  L   FS      DA+V++D+ +GRSRGFGFV++ + ++   AI+ LNG  L  R IR + A
Sbjct:   57 ESSFSTRVALSDFDQLEDDVEVAEQPRFSEDL--KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAA 284

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BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.017e-13
Identity = 58/182 (31.87%), Postives = 86/182 (47.25%), Query Frame = 3

Query:  117 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA--------YASSQREDTS---GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 617
            D    R +YVGNI   + N  L+ +    G +E  +++    S     +GFV       A   I  LN   I G+ IKVN           A++Q ED+      + V++G+L+  VT+  L   FS       A+V     T +S GFGFVSF ++E+ ++AI  LN   L  ++IR N A
Sbjct:   79 DGEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQFVESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRVNKA 260

[Close]

BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.017e-13
Identity = 54/178 (30.34%), Postives = 87/178 (48.88%), Query Frame = 3

Query:  138 VYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTS--------------GHFN----VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 605
            ++VGN+     +A L E+F   G +E  ++I    +     +GFV    +     A    NG  + G+ ++VN      +RE++S              G F+    V+VG+L+  V    L   FS      DA+V++D+ +GRSRGFGFV++ + E+  +AI  L+G  L  R IR
Sbjct:   89 IFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIR 266

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BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: PABP5_PONPY (Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.246e-13
Identity = 48/160 (30.00%), Postives = 80/160 (50.00%), Query Frame = 3

Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            ++YVG++ P VT  +L + F   GPL   ++    + +    YG+V++     A  A+ T+N   I G+P ++ W+     R   SG  N+F+ +L   + +  LF  FS F      +V+ D     S+G+ +V F +   A  AI  +NG  L NRQ+
Sbjct:   19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWS-QPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQV 175

HSP 2 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 49/180 (27.22%), Postives = 89/180 (49.44%), Query Frame = 3

Query:  117 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK---DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR---------------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            D +T  +V+V NI   + +  L+E+F   GP E  K+I+        +GFV Y    +A  A++ L+G+ I G+ + V  A    +R               +       +++ +L   + D  L   FS F + S A+VM +   G+ +GFG V F + E+A  A++++NG+ +G++ +
Sbjct:  194 DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPL 371

HSP 3 Score: 69.707 bits (169), Expect = 1.688e-11
Identity = 51/179 (28.49%), Postives = 86/179 (48.04%), Query Frame = 3

Query:  111 RFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVD-YFDRRSAA------LAIVTLNGRHIFGQPIKVNWAYASSQR-EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 623
            R   S   ++++ N+   + N  L  +FS+ G +  CK++  D  S G+   +FD  +AA      +  V LN R ++    K     A+  R  D +   NVFV ++  ++ D  L   F  +      +V+ D  +G+S+GFGFV +   E AQ A+ DL+GK +  + +    A K
Sbjct:   99 RLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQK 276

[Close]

BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: PABP5_PANTR (Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.246e-13
Identity = 48/160 (30.00%), Postives = 80/160 (50.00%), Query Frame = 3

Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            ++YVG++ P VT  +L + F   GPL   ++    + +    YG+V++     A  A+ T+N   I G+P ++ W+     R   SG  N+F+ +L   + +  LF  FS F      +V+ D     S+G+ +V F +   A  AI  +NG  L NRQ+
Sbjct:   19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWS-QPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQV 175

HSP 2 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 49/180 (27.22%), Postives = 89/180 (49.44%), Query Frame = 3

Query:  117 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK---DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR---------------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            D +T  +V+V NI   + +  L+E+F   GP E  K+I+        +GFV Y    +A  A++ L+G+ I G+ + V  A    +R               +       +++ +L   + D  L   FS F + S A+VM +   G+ +GFG V F + E+A  A++++NG+ +G++ +
Sbjct:  194 DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPL 371

HSP 3 Score: 69.707 bits (169), Expect = 1.688e-11
Identity = 51/179 (28.49%), Postives = 86/179 (48.04%), Query Frame = 3

Query:  111 RFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVD-YFDRRSAA------LAIVTLNGRHIFGQPIKVNWAYASSQR-EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 623
            R   S   ++++ N+   + N  L  +FS+ G +  CK++  D  S G+   +FD  +AA      +  V LN R ++    K     A+  R  D +   NVFV ++  ++ D  L   F  +      +V+ D  +G+S+GFGFV +   E AQ A+ DL+GK +  + +    A K
Sbjct:   99 RLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQK 276

[Close]

BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: PABP5_MACMU (Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.246e-13
Identity = 48/160 (30.00%), Postives = 80/160 (50.00%), Query Frame = 3

Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            ++YVG++ P VT  +L + F   GPL   ++    + +    YG+V++     A  A+ T+N   I G+P ++ W+     R   SG  N+F+ +L   + +  LF  FS F      +V+ D     S+G+ +V F +   A  AI  +NG  L NRQ+
Sbjct:   19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWS-QPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQV 175

HSP 2 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 49/180 (27.22%), Postives = 89/180 (49.44%), Query Frame = 3

Query:  117 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK---DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR---------------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            D +T  +V+V NI   + +  L+E+F   GP E  K+I+        +GFV Y    +A  A++ L+G+ I G+ + V  A    +R               +       +++ +L   + D  L   FS F + S A+VM +   G+ +GFG V F + E+A  A++++NG+ +G++ +
Sbjct:  194 DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPL 371

HSP 3 Score: 69.707 bits (169), Expect = 1.688e-11
Identity = 51/179 (28.49%), Postives = 86/179 (48.04%), Query Frame = 3

Query:  111 RFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVD-YFDRRSAA------LAIVTLNGRHIFGQPIKVNWAYASSQR-EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 623
            R   S   ++++ N+   + N  L  +FS+ G +  CK++  D  S G+   +FD  +AA      +  V LN R ++    K     A+  R  D +   NVFV ++  ++ D  L   F  +      +V+ D  +G+S+GFGFV +   E AQ A+ DL+GK +  + +    A K
Sbjct:   99 RLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQK 276

[Close]

BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: PABP5_HYLLA (Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.246e-13
Identity = 48/160 (30.00%), Postives = 80/160 (50.00%), Query Frame = 3

Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            ++YVG++ P VT  +L + F   GPL   ++    + +    YG+V++     A  A+ T+N   I G+P ++ W+     R   SG  N+F+ +L   + +  LF  FS F      +V+ D     S+G+ +V F +   A  AI  +NG  L NRQ+
Sbjct:   19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWS-QPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQV 175

HSP 2 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 49/180 (27.22%), Postives = 89/180 (49.44%), Query Frame = 3

Query:  117 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK---DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR---------------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            D +T  +V+V NI   + +  L+E+F   GP E  K+I+        +GFV Y    +A  A++ L+G+ I G+ + V  A    +R               +       +++ +L   + D  L   FS F + S A+VM +   G+ +GFG V F + E+A  A++++NG+ +G++ +
Sbjct:  194 DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPL 371

HSP 3 Score: 69.707 bits (169), Expect = 1.688e-11
Identity = 51/179 (28.49%), Postives = 86/179 (48.04%), Query Frame = 3

Query:  111 RFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVD-YFDRRSAA------LAIVTLNGRHIFGQPIKVNWAYASSQR-EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 623
            R   S   ++++ N+   + N  L  +FS+ G +  CK++  D  S G+   +FD  +AA      +  V LN R ++    K     A+  R  D +   NVFV ++  ++ D  L   F  +      +V+ D  +G+S+GFGFV +   E AQ A+ DL+GK +  + +    A K
Sbjct:   99 RLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQK 276

[Close]

BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: PABP5_HUMAN (Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.246e-13
Identity = 48/160 (30.00%), Postives = 80/160 (50.00%), Query Frame = 3

Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            ++YVG++ P VT  +L + F   GPL   ++    + +    YG+V++     A  A+ T+N   I G+P ++ W+     R   SG  N+F+ +L   + +  LF  FS F      +V+ D     S+G+ +V F +   A  AI  +NG  L NRQ+
Sbjct:   19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWS-QPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQV 175

HSP 2 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 49/180 (27.22%), Postives = 89/180 (49.44%), Query Frame = 3

Query:  117 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK---DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR---------------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            D +T  +V+V NI   + +  L+E+F   GP E  K+I+        +GFV Y    +A  A++ L+G+ I G+ + V  A    +R               +       +++ +L   + D  L   FS F + S A+VM +   G+ +GFG V F + E+A  A++++NG+ +G++ +
Sbjct:  194 DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPL 371

HSP 3 Score: 69.707 bits (169), Expect = 1.688e-11
Identity = 51/179 (28.49%), Postives = 86/179 (48.04%), Query Frame = 3

Query:  111 RFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVD-YFDRRSAA------LAIVTLNGRHIFGQPIKVNWAYASSQR-EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 623
            R   S   ++++ N+   + N  L  +FS+ G +  CK++  D  S G+   +FD  +AA      +  V LN R ++    K     A+  R  D +   NVFV ++  ++ D  L   F  +      +V+ D  +G+S+GFGFV +   E AQ A+ DL+GK +  + +    A K
Sbjct:   99 RLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQK 276

[Close]

BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: PABP5_GORGO (Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.246e-13
Identity = 48/160 (30.00%), Postives = 80/160 (50.00%), Query Frame = 3

Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            ++YVG++ P VT  +L + F   GPL   ++    + +    YG+V++     A  A+ T+N   I G+P ++ W+     R   SG  N+F+ +L   + +  LF  FS F      +V+ D     S+G+ +V F +   A  AI  +NG  L NRQ+
Sbjct:   19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWS-QPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQV 175

HSP 2 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 49/180 (27.22%), Postives = 89/180 (49.44%), Query Frame = 3

Query:  117 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK---DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR---------------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602
            D +T  +V+V NI   + +  L+E+F   GP E  K+I+        +GFV Y    +A  A++ L+G+ I G+ + V  A    +R               +       +++ +L   + D  L   FS F + S A+VM +   G+ +GFG V F + E+A  A++++NG+ +G++ +
Sbjct:  194 DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPL 371

HSP 3 Score: 69.707 bits (169), Expect = 1.688e-11
Identity = 51/179 (28.49%), Postives = 86/179 (48.04%), Query Frame = 3

Query:  111 RFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVD-YFDRRSAA------LAIVTLNGRHIFGQPIKVNWAYASSQR-EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 623
            R   S   ++++ N+   + N  L  +FS+ G +  CK++  D  S G+   +FD  +AA      +  V LN R ++    K     A+  R  D +   NVFV ++  ++ D  L   F  +      +V+ D  +G+S+GFGFV +   E AQ A+ DL+GK +  + +    A K
Sbjct:   99 RLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQK 276

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BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: TSAP1_MOUSE (tRNA selenocysteine 1-associated protein 1 OS=Mus musculus GN=Trnau1ap PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.852e-13
Identity = 51/177 (28.81%), Postives = 96/177 (54.24%), Query Frame = 3

Query:  135 SVYVGNIHPQVTNALLQEVFSSTGP-LEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFG----QPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACF-SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK-WLGNRQIRCNWAAKGAT 632
            S+++G++ P +    +   F++ G  +   K+I+       + Y FV++ D  +A   +  +NG+ + G    +  K+N+A    Q  D S  +++FVGDL+P+V D  L+  F  V+P+C   +V+ D  TG S+G+GFV F ++ + + A+ +  G   LG + +R + A   A+
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYGKQ-PDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-PTGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKAS 178

The following BLAST results are available for this feature:

BLAST of CX295688 vs. ExPASy Swiss-Prot

BLAST of CX295688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123


Match Name	E-value	Identity	Description
ROC2_NICPL	2.355e-13	28.70	31 kDa ribonucleoprotein, chloroplastic OS=Nicotia...	[more]
RRP2_SPIOL	4.017e-13	31.87	30S ribosomal protein 2, chloroplastic OS=Spinacia...	[more]
ROC1_NICPL	4.017e-13	30.34	30 kDa ribonucleoprotein, chloroplastic OS=Nicotia...	[more]
PABP5_PONPY	5.246e-13	30.00	Polyadenylate-binding protein 5 OS=Pongo pygmaeus ...	[more]
PABP5_PANTR	5.246e-13	30.00	Polyadenylate-binding protein 5 OS=Pan troglodytes...	[more]
PABP5_MACMU	5.246e-13	30.00	Polyadenylate-binding protein 5 OS=Macaca mulatta ...	[more]
PABP5_HYLLA	5.246e-13	30.00	Polyadenylate-binding protein 5 OS=Hylobates lar G...	[more]
PABP5_HUMAN	5.246e-13	30.00	Polyadenylate-binding protein 5 OS=Homo sapiens GN...	[more]
PABP5_GORGO	5.246e-13	30.00	Polyadenylate-binding protein 5 OS=Gorilla gorilla...	[more]
TSAP1_MOUSE	6.852e-13	28.81	tRNA selenocysteine 1-associated protein 1 OS=Mus ...	[more]

Pages

Properties


Property Name	Value
Genbank description	C05074H02SK DroRLeaf1 Citrus clementina cDNA clone C05074H02, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX295688 ID=CX295688; Name=CX295688; organism=Citrus clementina; type=EST; length=700bp
GAGGGGCTGAAGCACAAACAATGATGCAGCAGCAGTCTTTATACCAATAC
CATCCCAGTCTCTTAGCTGCTCCTCAGATAGAGCCTATCTTGAGTGGAAA
TCTGCCTCCGCGATTTGATGCAAGTACATGCCGCAGCGTGTATGTTGGAA
ACATTCATCCTCAGGTTACAAATGCCCTGCTTCAAGAGGTTTTTTCAAGT
ACCGGTCCCCTTGAAGGATGCAAGCTCATTAAAAAAGATAAGTCATCCTA
TGGCTTTGTGGACTACTTTGATCGCAGATCAGCTGCCCTTGCAATTGTGA
CTCTTAATGGAAGGCACATATTTGGACAACCTATTAAAGTAAACTGGGCT
TATGCTAGCAGCCAGAGAGAGGACACATCAGGTCATTTCAACGTTTTTGT
TGGTGATCTTAGCCCTGAAGTTACAGATGCTACTTTGTTTGCGTGCTTCT
CTGTGTTTCCTACTTGTTCGGATGCAAGGGTTATGTGGGACCAAAAGACT
GGGCGTTCAAGGGGTTTTGGGTTTGTTTCTTTTCGGAATCAGGAGGATGC
CCAAAGTGCAATAAATGACTTAAATGGGAAGTGGCTTGGTAATAGACAGA
TTCGGTGCAACTGGGCTGCAAAAGGTGCTACCTCTGGTGATGAAAAGCAA
GTTCAGATTCCAAAGTGTTGTAGAGCTTACAATGGGATATCTGAAGATGG