CX295696

Overview
NameCX295696
Unique NameCX295696
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295696 vs. ExPASy Swiss-Prot
Match: PPIB_RAT (Peptidyl-prolyl cis-trans isomerase B OS=Rattus norvegicus GN=Ppib PE=2 SV=3)

HSP 1 Score: 168.318 bits (425), Expect = 3.851e-41
Identity = 86/135 (63.70%), Postives = 95/135 (70.37%), Query Frame = 2
Query:  323 KVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPETAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQV 727
            KVT KVYFD  IG+   +  GR+  GL+G  VP+T +NF AL TGEKGFGYK S FHRVIKDFMIQ             SIYG  F DENFKL H GPG VSMANAG +TNGSQFFI TVKT WLD +HVVFG+V
Sbjct:   41 KVTVKVYFDFQIGD---EPVGRVTFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTSWLDGKHVVFGKV 172          
BLAST of CX295696 vs. ExPASy Swiss-Prot
Match: PPIB1_RHIOR (Peptidyl-prolyl cis-trans isomerase B1 OS=Rhizopus oryzae GN=cyp8 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.851e-41
Identity = 83/134 (61.94%), Postives = 98/134 (73.13%), Query Frame = 2
Query:  326 VTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPETAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQV 727
            +T+K+YFD+  G+   +  GRIV+GLYG  VP+TAENF+ L TGE G+GYKGSTFHRVIK FMIQ             SIYG  F DENFKL H  PG++SMANAG +TNGSQFFI TV TPWLD +HVVFG+V
Sbjct:   32 ITDKIYFDIKQGD---ESLGRIVLGLYGKTVPKTAENFKQLATGENGYGYKGSTFHRVIKKFMIQGGDFTNHDGTGGKSIYGNRFADENFKLRHSTPGLLSMANAGRDTNGSQFFITTVVTPWLDGKHVVFGRV 162          
BLAST of CX295696 vs. ExPASy Swiss-Prot
Match: CYPH_BRANA (Peptidyl-prolyl cis-trans isomerase OS=Brassica napus GN=CYP PE=2 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 5.030e-41
Identity = 87/141 (61.70%), Postives = 96/141 (68.09%), Query Frame = 2
Query:  326 VTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPETAENFRALCTGEKGFG-------YKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQV 727
            V  KVYFD+++G+   K AGRIV+ LY D VPETAENFRALCTGE+G G       YKGS FHRVI  FM Q             SIYG  FKDENF   H GPG++SM NAG NTNGSQFFICT KT WLD +HVVFGQV
Sbjct:    2 VNPKVYFDMTVGD---KAAGRIVMELYADTVPETAENFRALCTGERGIGKSGKPLHYKGSAFHRVIPKFMCQGGDFTAGNGTGGESIYGMKFKDENFVKKHTGPGILSMRNAGSNTNGSQFFICTEKTSWLDGKHVVFGQV 139          
BLAST of CX295696 vs. ExPASy Swiss-Prot
Match: CYP7_CAEEL (Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhabditis elegans GN=cyn-7 PE=1 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 5.030e-41
Identity = 85/138 (61.59%), Postives = 98/138 (71.01%), Query Frame = 2
Query:  335 KVYFDVSIGNPVGKLAGRIVIGLYGDDVPETAENFRALCTGEKGFG-------YKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQV 727
            +V+FD++I    GK  GRIV+ LY D VP+TAENFRALCTGEKG G       +KGS FHR+I +FMIQ             SIYG  F DENFK  H GPGV+SMANAGPNTNGSQFF+CTVKT WLD +HVVFG+V
Sbjct:    5 RVFFDITIA---GKPTGRIVMELYNDIVPKTAENFRALCTGEKGVGKSGKPLHFKGSKFHRIIPEFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTAWLDGKHVVFGRV 139          
BLAST of CX295696 vs. ExPASy Swiss-Prot
Match: CYP3_CAEEL (Peptidyl-prolyl cis-trans isomerase 3 OS=Caenorhabditis elegans GN=cyn-3 PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 5.030e-41
Identity = 85/139 (61.15%), Postives = 99/139 (71.22%), Query Frame = 2
Query:  332 NKVYFDVSIGNPVGKLAGRIVIGLYGDDVPETAENFRALCTGEKGFG-------YKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQV 727
            +KV+FD++IG   GK +GRIV+ LY D VP+TA NFRALCTGE G G       +KGS FHR+I +FMIQ             SIYG  F DENFK  H GPGV+SMANAGPNTNGSQFF+CTVKT WLD +HVVFG+V
Sbjct:    4 SKVFFDITIG---GKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRV 139          
BLAST of CX295696 vs. ExPASy Swiss-Prot
Match: PPIA_BLAGE (Peptidyl-prolyl cis-trans isomerase OS=Blattella germanica GN=CYPA PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.911e-40
Identity = 85/132 (64.39%), Postives = 95/132 (71.97%), Query Frame = 2
Query:  335 KVYFDVSI-GNPVGKLAGRIVIGLYGDDVPETAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQV 727
            +V+FD+S  G PVG    RIV+ L  D VP+TAENFRALCTGEKGFGYKGS FHRVI +FM Q             SIYG  F+DENF+L H GPG++ MANAGPNTNGSQFFI T KT WLD RHVVFG V
Sbjct:    5 RVFFDMSADGQPVG----RIVMELRSDVVPKTAENFRALCTGEKGFGYKGSRFHRVIPNFMCQGGDFTNHNGTGGKSIYGTKFEDENFQLKHTGPGILWMANAGPNTNGSQFFITTAKTSWLDNRHVVFGSV 132          
BLAST of CX295696 vs. ExPASy Swiss-Prot
Match: PPIA1_RHIOR (Peptidyl-prolyl cis-trans isomerase A1 OS=Rhizopus oryzae GN=cyp2 PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.911e-40
Identity = 83/131 (63.36%), Postives = 95/131 (72.52%), Query Frame = 2
Query:  335 KVYFDVSIGNPVGKLAGRIVIGLYGDDVPETAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQV 727
            KV+FDVS  +   K  GRIV+ L  D VP+TAENFRALCTGEKGFGYKG +FHRVI +FM+Q             SIYG  F+DENF L H GPG +SMANAGPNTNGSQFFI T+K  WLD +HVVFG+V
Sbjct:    5 KVFFDVSANS---KPLGRIVMELRADVVPQTAENFRALCTGEKGFGYKGCSFHRVIPEFMLQGGDFTNHNGTGGKSIYGNKFRDENFTLKHTGPGDLSMANAGPNTNGSQFFITTIKCSWLDGKHVVFGRV 132          
BLAST of CX295696 vs. ExPASy Swiss-Prot
Match: PPIB_YARLI (Peptidyl-prolyl cis-trans isomerase B OS=Yarrowia lipolytica GN=CPR2 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.260e-40
Identity = 84/140 (60.00%), Postives = 100/140 (71.43%), Query Frame = 2
Query:  308 ADLQSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPETAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQV 727
            A+  +++T+KVYFD+  G    +  G+IV+GLYGD VP+T ENFRALCTGE G GYKGS FHRVIK+FMIQ             SIYGR F DENF+L H  P  +SMANAG +TNGSQFFI TV T WLD +HVVFG+V
Sbjct:   24 AEPDAEITHKVYFDIKQGE---ESLGKIVMGLYGDVVPKTVENFRALCTGETGKGYKGSKFHRVIKNFMIQGGDFTRGDGTGGESIYGRKFPDENFQLKHTKPYKLSMANAGRDTNGSQFFITTVVTSWLDGKHVVFGEV 160          
BLAST of CX295696 vs. ExPASy Swiss-Prot
Match: PPIA_SAGOE (Peptidyl-prolyl cis-trans isomerase A OS=Saguinus oedipus GN=PPIA PE=3 SV=3)

HSP 1 Score: 165.236 bits (417), Expect = 3.260e-40
Identity = 81/134 (60.45%), Postives = 94/134 (70.15%), Query Frame = 2
Query:  326 VTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPETAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQV 727
            V   V+FD+++    G+  GR+   L+ D VP+TAENFRAL TGEKGFGYKGS FHR+I  FM Q             SIYG  F DENF L H GPG++SMANAGPNTNGSQFFICTVKT WLD +HVVFG+V
Sbjct:    2 VNPTVFFDIAVD---GEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTVKTEWLDGKHVVFGKV 132          
BLAST of CX295696 vs. ExPASy Swiss-Prot
Match: PPIA_DROME (Peptidyl-prolyl cis-trans isomerase OS=Drosophila melanogaster GN=Cyp1 PE=1 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 3.260e-40
Identity = 82/131 (62.60%), Postives = 95/131 (72.52%), Query Frame = 2
Query:  335 KVYFDVSIGNPVGKLAGRIVIGLYGDDVPETAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQV 727
            +V+FD++  N   +  GRIV+ L  D VP+TAENFRALCTGEKGFGYKGS FHRVI +FM Q             SIYG  F DENF+L H G G++SMANAG NTNGSQFFICTVKT WLD +HVVFG+V
Sbjct:   68 RVFFDMTADN---EPLGRIVMELRSDVVPKTAENFRALCTGEKGFGYKGSIFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFPDENFELKHTGSGILSMANAGANTNGSQFFICTVKTAWLDNKHVVFGEV 195          
The following BLAST results are available for this feature:
BLAST of CX295696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
PPIB_RAT3.851e-4163.70Peptidyl-prolyl cis-trans isomerase B OS=Rattus no... [more]
PPIB1_RHIOR3.851e-4161.94Peptidyl-prolyl cis-trans isomerase B1 OS=Rhizopus... [more]
CYPH_BRANA5.030e-4161.70Peptidyl-prolyl cis-trans isomerase OS=Brassica na... [more]
CYP7_CAEEL5.030e-4161.59Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhab... [more]
CYP3_CAEEL5.030e-4161.15Peptidyl-prolyl cis-trans isomerase 3 OS=Caenorhab... [more]
PPIA_BLAGE1.911e-4064.39Peptidyl-prolyl cis-trans isomerase OS=Blattella g... [more]
PPIA1_RHIOR1.911e-4063.36Peptidyl-prolyl cis-trans isomerase A1 OS=Rhizopus... [more]
PPIB_YARLI3.260e-4060.00Peptidyl-prolyl cis-trans isomerase B OS=Yarrowia ... [more]
PPIA_SAGOE3.260e-4060.45Peptidyl-prolyl cis-trans isomerase A OS=Saguinus ... [more]
PPIA_DROME3.260e-4062.60Peptidyl-prolyl cis-trans isomerase OS=Drosophila ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05074H10SK DroRLeaf1 Citrus clementina cDNA clone C05074H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295696 ID=CX295696; Name=CX295696; organism=Citrus clementina; type=EST; length=740bp
ATCTTTTATCTGAATCTCTCACACACCGACTCTGAGGCACTTGTCCATTC
CATCAATGGCGGCAGCGGCTTCATTCGCAGCCCAGATAAATGTAGGCTCG
GTCTCAGGCCCACTTCAACTGAACAAAGCTCTCAGTCCCTCGCGTAATGC
AATCGAGATACCCAGAAAATCTTCTTCATTCCTATCAAATGCTTCATCAT
CCTGCTCCAGCTTCTTCTCCCGTCCGTTGACTCCCGTTCCCCCTCTCACT
CATTTTCCCACCAGGAAAATGGGTACGCGTAGCCTTGTTCGGGCCAGTGC
TGAGGTAGCTGATTTACAATCGAAAGTTACCAATAAAGTTTATTTCGATG
TGAGCATTGGGAATCCAGTAGGAAAGCTTGCTGGAAGAATCGTGATTGGA
TTGTACGGTGATGATGTGCCCGAAACGGCAGAGAACTTCCGTGCTTTATG
CACAGGAGAGAAGGGCTTTGGTTACAAAGGTTCCACGTTCCATCGTGTTA
TCAAAGATTTCATGATCCAAGGAGGAGACTTTGATAAAGGCAATGGAACT
GGAGGTAAAAGTATATACGGCCGTACATTCAAAGATGAGAACTTCAAATT
GTCGCATATTGGACCAGGAGTAGTTAGTATGGCAAATGCAGGTCCCAACA
CTAATGGCAGCCAATTTTTCATTTGCACTGTCAAGACACCATGGCTAGAT
CAGAGGCATGTTGTCTTTGGGCAAGTTTGGAGGCATGGAC
back to top