CX295700

Overview
NameCX295700
Unique NameCX295700
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295700 vs. ExPASy Swiss-Prot
Match: LOX6_ARATH (Lipoxygenase 6, choloroplastic OS=Arabidopsis thaliana GN=LOX6 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.033e-19
Identity = 49/132 (37.12%), Postives = 81/132 (61.36%), Query Frame = 2
Query:  260 VSAELDPKTGLDKSTIQDYARKI--GADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKP 649
            VS E+DP+TG  + +++     +         + + ++F VP  FG+ GAILV N    E+ L +I+++   +  +    N+W+HSK+DN Q R+ F ++  LPS+TPDG+K  R ++L  +RG+G+GERKP
Sbjct:  120 VSEEIDPETGKGRKSLESPVMGLPKAVKDPRYLVFTADFTVPINFGKPGAILVTNLLSTEICLSEIIIEDSTD-TILFPANTWIHSKNDNPQARIIFRSQPCLPSETPDGIKELREKDLVSVRGDGKGERKP 250          
BLAST of CX295700 vs. ExPASy Swiss-Prot
Match: LOXA_SOLLC (Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.007e-18
Identity = 47/134 (35.07%), Postives = 76/134 (56.72%), Query Frame = 2
Query:  263 SAELDPKTGL-----DKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERK 646
            S + DP  GL     + + ++++   +     G   +   F+    FG  GA +++N H  E +LK + L+ +PN G V+  CNSW++     K  R+FF N+ YLPS+TP+ L++YR  EL  LRG+G G+R+
Sbjct:   59 SVQSDPANGLQGKHSNPAYLENFLLTLTPLAAGETAFGVTFDWNEEFGVPGAFVIKNMHINEFFLKSLTLEDVPNHGKVHFVCNSWVYPSFRYKSDRIFFANQPYLPSETPELLRKYRENELVTLRGDGTGKRE 192          
BLAST of CX295700 vs. ExPASy Swiss-Prot
Match: LOX3_SOYBN (Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.539e-18
Identity = 49/129 (37.98%), Postives = 74/129 (57.36%), Query Frame = 2
Query:  266 AELDPKTGLDKST-IQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERK 646
            A+ + K  L K+T ++     +   G G   ++  FE   G G +GA  ++N    E +L  + L+ +PN G ++  CNSW+++    K  R+FF N+ YLPS+TP  L +YR EEL  LRG+G GERK
Sbjct:   68 ADANGKGKLGKATFLEGIITSLPTLGAGQSAFKINFEWDDGSGILGAFYIKNFMQTEFFLVSLTLEDIPNHGSIHFVCNSWIYNAKLFKSDRIFFANQTYLPSETPAPLVKYREEELHNLRGDGTGERK 196          
BLAST of CX295700 vs. ExPASy Swiss-Prot
Match: LOX1_ARATH (Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.539e-18
Identity = 46/115 (40.00%), Postives = 66/115 (57.39%), Query Frame = 2
Query:  305 IQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLP-NGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERK 646
            ++D+   I +   G   ++  F+  + FG  GA L+ N H  E  LK + L+ +P +G V+  CNSW++        RVFF+NK YLP +TP  L +YR EEL  LRG G+GE K
Sbjct:   80 LEDWITTITSLTAGESAFKVTFDYETDFGYPGAFLIRNSHFSEFLLKSLTLEDVPGHGRVHYICNSWIYPAKHYTTDRVFFSNKTYLPHETPATLLKYREEELVSLRGTGEGELK 194          
BLAST of CX295700 vs. ExPASy Swiss-Prot
Match: LOX2_PEA (Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.115e-17
Identity = 45/104 (43.27%), Postives = 60/104 (57.69%), Query Frame = 2
Query:  338 GDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERK 646
            G G   +   FE     G  GA  ++N    E +LK + L+ +PN G +   CNSW+++    K  R+FF NK YLPS+TP  L +YR EEL  LRG+G GERK
Sbjct:  101 GAGESAFNIHFEWDHEMGIPGAFYIKNYMQVEFFLKSLTLEDVPNHGTIRFVCNSWVYNSKLYKSPRIFFANKSYLPSETPSPLVKYREEELQTLRGDGTGERK 204          
BLAST of CX295700 vs. ExPASy Swiss-Prot
Match: LOX1_SOLTU (Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.245e-17
Identity = 41/94 (43.62%), Postives = 62/94 (65.96%), Query Frame = 2
Query:  368 FEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERK 646
            F+    FG  GA +++N H  E +LK + L+ +PN G V+  CNSW++   + K  R+FF N+ YLPS+TP+ L++YR  EL  LRG+G G+R+
Sbjct:  100 FDWNEEFGVPGAFIIKNMHINEFFLKSLTLEDVPNHGKVHFVCNSWVYPSLNYKSDRIFFANQPYLPSETPELLRKYRENELLTLRGDGTGKRE 193          
BLAST of CX295700 vs. ExPASy Swiss-Prot
Match: LOX2_SOYBN (Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.239e-17
Identity = 44/104 (42.31%), Postives = 60/104 (57.69%), Query Frame = 2
Query:  338 GDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERK 646
            G G   +  +FE     G  GA  ++N    E YLK + L+ +PN G +   CNSW+++    K  R+FF N  Y+PS+TP  L  YR EEL  LRG+G+GERK
Sbjct:  105 GAGESAFNIQFEWDESMGIPGAFYIKNYMQVEFYLKSLTLEDVPNQGTIRFVCNSWVYNTKLYKSVRIFFANHTYVPSETPAALVGYREEELKNLRGDGKGERK 208          
BLAST of CX295700 vs. ExPASy Swiss-Prot
Match: LOX5_ARATH (Lipoxygenase 5, chloroplastic OS=Arabidopsis thaliana GN=LOX5 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.536e-17
Identity = 44/106 (41.51%), Postives = 59/106 (55.66%), Query Frame = 2
Query:  368 FEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVT-----CNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKPMIDL*YD 670
            F+     G   A +++N HH + YLK + L G P+G    T     CNSW++  H  +  RVFF+NK YLPS+TP+ +K  R EEL  LRGN +G      D  YD
Sbjct:  116 FDWDESMGPPAAFVIKNHHHSQFYLKSLTLRGFPDGEGGATAIHFICNSWIYPNHRYRSDRVFFSNKAYLPSETPELIKELREEELKNLRGNEKGGEFKEWDRVYD 221          
BLAST of CX295700 vs. ExPASy Swiss-Prot
Match: LOX3_PEA (Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.536e-17
Identity = 44/104 (42.31%), Postives = 60/104 (57.69%), Query Frame = 2
Query:  338 GDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERK 646
            G G   ++  FE     G  GA  ++N    E +L  + LD +PN G +   CNSW+++   +K  R+FF N+ YLPS+TP  L  YR EEL  LRG+G GERK
Sbjct:   96 GAGQSAFKIHFEWDDDMGIPGAFYIKNFMQTEFFLVSLTLDDIPNHGSIYFVCNSWIYNAKHHKIDRIFFANQTYLPSETPAPLVHYREEELNNLRGDGTGERK 199          
BLAST of CX295700 vs. ExPASy Swiss-Prot
Match: LOXA_PHAVU (Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.230e-17
Identity = 43/104 (41.35%), Postives = 61/104 (58.65%), Query Frame = 2
Query:  338 GDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERK 646
            GD    +   FE    FG   A  ++N    E +L  + L+ +PN G ++  CNSW+++    K+ R+FF NK YLP++TP  L +YR EEL  LRG+G GERK
Sbjct:  101 GDRQDAFNVYFEWDENFGIPEAFYIKNFMQSEFFLVSLTLEDIPNHGTIHFVCNSWVYNAKSYKRDRIFFANKTYLPNETPASLVKYRKEELENLRGDGTGERK 204          
The following BLAST results are available for this feature:
BLAST of CX295700 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
LOX6_ARATH2.033e-1937.12Lipoxygenase 6, choloroplastic OS=Arabidopsis thal... [more]
LOXA_SOLLC5.007e-1835.07Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 P... [more]
LOX3_SOYBN6.539e-1837.98Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 ... [more]
LOX1_ARATH6.539e-1840.00Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=... [more]
LOX2_PEA1.115e-1743.27Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=... [more]
LOX1_SOLTU3.245e-1743.62Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2... [more]
LOX2_SOYBN4.239e-1742.31Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 ... [more]
LOX5_ARATH5.536e-1741.51Lipoxygenase 5, chloroplastic OS=Arabidopsis thali... [more]
LOX3_PEA5.536e-1742.31Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=... [more]
LOXA_PHAVU7.230e-1741.35Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionC05075A02SK DroRLeaf1 Citrus clementina cDNA clone C05075A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295700 ID=CX295700; Name=CX295700; organism=Citrus clementina; type=EST; length=671bp
TCTCCATGGAAATTACGGCCATGCCTTTCTTCCAGTTCCATCTACCTCTT
CACTTTTTAAAGGAAGTCCCAAACTTCGGATTGGTTCTGTTCCCAGAAAC
ACTATCAAAGCTATAGCAACTTCCACTGAAAAATCAATCAAAGTTAAGGC
TGTTGTTACTGTGAAACCAACTGTGGGAAGCTTCCTCTCAAATATTTCTT
TAGACCGAGGGTTAGATGATCTTGGAGATTTGTTTGGTAAATCACTTCTC
TTGGAGCTTGTCAGTGCTGAGCTTGACCCCAAGACGGGATTGGATAAATC
CACCATCCAAGATTATGCGCGCAAAATTGGTGCGGACGGGGATGGAAACA
TGCAATATGAATCAGAATTCGAAGTCCCATCTGGATTTGGAGAAATTGGC
GCAATATTAGTGGAAAATGAGCACCACAAAGAGATGTATTTGAAAGATAT
TGTTCTTGATGGTTTGCCAAATGGTCCTGTCAACGTAACATGTAATTCAT
GGCTTCACTCAAAGCACGACAATAAACAAAAGAGAGTTTTCTTTACCAAC
AAGTTGTACTTGCCATCACAAACACCAGACGGATTGAAGAGATATAGAGC
TGAGGAGCTTACCATTTTGCGAGGTAATGGACAAGGAGAGCGCAAACCTA
TGATAGATCTATGATATGATG
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