CX295702

Overview
NameCX295702
Unique NameCX295702
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPC_STAA8 (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain NCTC 8325) GN=clpC PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.051e-32
Identity = 74/128 (57.81%), Postives = 93/128 (72.66%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ EIQ++G+VILFIDE+HTL+G+G    G +G  +D SN+LKP+L RGELQCI +TT DE+R   EKD AL RRFQPV + EPS  D V IL GLR++YEAHH    + EAI AAV LS R
Sbjct:  258 EERLKKVMEEIQQAGNVILFIDELHTLVGAG----GAEGA-IDASNILKPALARGELQCIGATTLDEYRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVKLSNR 380          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPC_STAA3 (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain USA300) GN=clpC PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.051e-32
Identity = 74/128 (57.81%), Postives = 93/128 (72.66%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ EIQ++G+VILFIDE+HTL+G+G    G +G  +D SN+LKP+L RGELQCI +TT DE+R   EKD AL RRFQPV + EPS  D V IL GLR++YEAHH    + EAI AAV LS R
Sbjct:  258 EERLKKVMEEIQQAGNVILFIDELHTLVGAG----GAEGA-IDASNILKPALARGELQCIGATTLDEYRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVKLSNR 380          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPC_BACSU (Negative regulator of genetic competence clpC/mecB OS=Bacillus subtilis GN=clpC PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.058e-32
Identity = 70/128 (54.69%), Postives = 96/128 (75.00%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ EI+++G++ILFIDE+HTLIG+G    G +G  +D SN+LKPSL RGELQCI +TT DE+R   EKD AL RRFQP+ + +PS +++++IL GLR++YEAHH    T +AI AAV LS R
Sbjct:  258 EDRLKKVMDEIRQAGNIILFIDELHTLIGAG----GAEGA-IDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDR 380          

HSP 2 Score: 72.4034 bits (176), Expect = 2.691e-12
Identity = 43/95 (45.26%), Postives = 59/95 (62.11%), Query Frame = 2
Query:  422 ASMGDTSEIV---VESSLPSASDDD--EPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDP 691
            AS+ DT + +   VE +  S  +    E + V  DDIA V S W+G+PV +I   E   L+ +E  L  RVIGQDEAV A+++AV+R+R GLKDP
Sbjct:  440 ASLRDTEQRLREQVEDTKKSWKEKQGQENSEVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDP 534          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_OCEIH (Chaperone protein clpB OS=Oceanobacillus iheyensis GN=clpB PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.994e-32
Identity = 71/128 (55.47%), Postives = 94/128 (73.44%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ EI+++G++ILFIDE+HTLIG+G    G +G  +D SN+LKPSL RGELQCI +TT DE+R   EKD AL RRFQP+ + EP+ E+ ++IL GLR++YEAHH    T EAI AA  LS R
Sbjct:  261 EDRLKKVMEEIRQAGNIILFIDELHTLIGAG----GAEGA-IDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDEPTLEETIQILNGLRDRYEAHHRVTITDEAIEAAASLSDR 383          

HSP 2 Score: 72.4034 bits (176), Expect = 2.691e-12
Identity = 33/61 (54.10%), Postives = 47/61 (77.05%), Query Frame = 2
Query:  509 DDIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDP 691
            +DIAAV S W+G+PV ++T DE   L+ +E+ L  RVIGQ EAV A+++A++R+R GLKDP
Sbjct:  477 EDIAAVVSTWTGVPVSKLTKDETDRLLNMEKILHDRVIGQSEAVNAVAKAIRRARAGLKDP 537          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPC_STAES (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus epidermidis (strain ATCC 12228) GN=clpC PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.897e-32
Identity = 69/128 (53.91%), Postives = 92/128 (71.88%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ EI ++G+VILFIDE+HTL+G+G    G +G  +D SN+LKP+L RGELQCI +TT DE+R   EKD AL RRFQP+ + EP+ ED + IL GLR++YEAHH    + EA+ AA  LS R
Sbjct:  258 EERLKKVMEEIHQAGNVILFIDELHTLVGAG----GAEGA-IDASNILKPALARGELQCIGATTLDEYRKNIEKDAALERRFQPIQVDEPTVEDTIEILKGLRDRYEAHHRINISDEALEAAAKLSDR 380          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPC_STAEQ (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=clpC PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.897e-32
Identity = 69/128 (53.91%), Postives = 92/128 (71.88%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ EI ++G+VILFIDE+HTL+G+G    G +G  +D SN+LKP+L RGELQCI +TT DE+R   EKD AL RRFQP+ + EP+ ED + IL GLR++YEAHH    + EA+ AA  LS R
Sbjct:  258 EERLKKVMEEIHQAGNVILFIDELHTLVGAG----GAEGA-IDASNILKPALARGELQCIGATTLDEYRKNIEKDAALERRFQPIQVDEPTVEDTIEILKGLRDRYEAHHRINISDEALEAAAKLSDR 380          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPAA_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.982e-31
Identity = 69/126 (54.76%), Postives = 89/126 (70.63%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS 380
            E R+  L+ EI++S ++ILFIDEVHTLIG+G          +D +N+LKP+L RGELQCI +TT DE+R   EKD AL RRFQPV + EPS ++ ++IL GLRE+YE HH   +T EAI AA  LS
Sbjct:  352 EERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGA-----IDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLHYTDEAIEAAAKLS 472          

HSP 2 Score: 76.6406 bits (187), Expect = 1.427e-13
Identity = 39/79 (49.37%), Postives = 54/79 (68.35%), Query Frame = 2
Query:  455 ESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDP 691
            +S   S + D    +V   DI  + S W+GIPV++++ DE   L+ +EE L  RVIGQDEAV AISRA++R+RVGLK+P
Sbjct:  557 KSKAESEAGDAAGPIVTEADIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHTRVIGQDEAVKAISRAIRRARVGLKNP 635          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: HLYB_TREHY (Hemolysin B OS=Treponema hyodysenteriae GN=tlyB PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.589e-31
Identity = 68/128 (53.12%), Postives = 93/128 (72.66%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ EI+K+ ++I+FIDE+HTLIG+G    G +G  LD +N+LKP+L RGE+QCI +TT +E++   EKD AL RRFQP+ + EPS ED + IL G++ KYE HH  K+T EAINAA  LS R
Sbjct:  267 EERIKNIVLEIKKASNIIIFIDELHTLIGAG----GAEGA-LDAANMLKPALSRGEIQCIGATTINEYKKYIEKDGALVRRFQPINVEEPSIEDTIEILNGIKGKYEEHHKVKYTDEAINAAAVLSKR 389          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPC_STAHJ (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus haemolyticus (strain JCSC1435) GN=clpC PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.589e-31
Identity = 68/126 (53.97%), Postives = 91/126 (72.22%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS 380
            E R+  ++ EI ++G+VILFIDE+HTL+G+G    G +G  +D SN+LKP+L RGELQCI +TT DE+R   EKD AL RRFQP+ + EP+ ED + IL GLR++YEAHH    + EA+ AA  LS
Sbjct:  258 EERLKKVMEEIHQAGNVILFIDELHTLVGAG----GAEGA-IDASNILKPALARGELQCIGATTLDEYRKNIEKDAALERRFQPIQVDEPTVEDTIAILKGLRDRYEAHHRINISDEALEAAAKLS 378          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPC_STAS1 (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=clpC PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.381e-31
Identity = 69/128 (53.91%), Postives = 92/128 (71.88%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ EI ++G+VILFIDE+HTL+G+G    G +G  +D SN+LKP+L RGELQCI +TT DE+R   EKD AL RRFQPV + EP+ ED + IL GLR++YEAHH    + EA+ +A  LS R
Sbjct:  258 EERLKKVMEEIHQAGNVILFIDELHTLVGAG----GAEGA-IDASNILKPALARGELQCIGATTLDEYRKNIEKDAALERRFQPVQVDEPTVEDTIEILKGLRDRYEAHHRINISDEALVSAAKLSHR 380          
The following BLAST results are available for this feature:
BLAST of CX295702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
CLPC_STAA81.051e-3257.81ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAA31.051e-3257.81ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_BACSU3.058e-3254.69Negative regulator of genetic competence clpC/mecB... [more]
CLPB_OCEIH3.994e-3255.47Chaperone protein clpB OS=Oceanobacillus iheyensis... [more]
CLPC_STAES8.897e-3253.91ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAEQ8.897e-3253.91ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPAA_SOLLC1.982e-3154.76ATP-dependent Clp protease ATP-binding subunit clp... [more]
HLYB_TREHY2.589e-3153.13Hemolysin B OS=Treponema hyodysenteriae GN=tlyB PE... [more]
CLPC_STAHJ2.589e-3153.97ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAS13.381e-3153.91ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC05075A04SK DroRLeaf1 Citrus clementina cDNA clone C05075A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295702 ID=CX295702; Name=CX295702; organism=Citrus clementina; type=EST; length=710bp
TAGAGGCTCGTGTTACTACCTTAATAAGTGAGATACAGAAATCAGGTGAT
GTCATTCTTTTCATTGATGAAGTTCACACACTTATTGGTTCGGGCACAGT
GGGACGAGGAAACAAGGGTACTGGTCTTGACATTTCCAATCTATTGAAGC
CATCACTTGGGAGGGGTGAACTTCAGTGTATTGCATCCACAACTCAAGAT
GAACACAGGACCCAATTTGAGAAGGACAAAGCATTAGCCCGGAGATTCCA
GCCTGTATTGATTAGTGAACCAAGCCAGGAGGATGCAGTTAGGATACTCT
TGGGTCTGCGTGAGAAATATGAGGCCCATCACAACTGCAAATTCACGCTA
GAAGCAATAAATGCTGCTGTGCACCTGTCAGCAAGGTCCAGGGAAGTAGG
CTGAAATATGATGATGTTGTTGCCAGCATGGGTGATACTAGTGAAATTGT
TGTAGAATCCTCTTTGCCTTCTGCTTCAGATGATGATGAACCTGCAGTCG
TGGGACCTGATGATATTGCAGCAGTTGCTTCACTTTGGTCTGGGATCCCA
GTTCAGCAGATCACTGCCGATGAAAGAATGCTGCTAGTGGGTCTCGAAGA
GCAGCTTANAAAGCGAGTTATTGGTCAAGATGAGGCTGTTGCCGCCATTT
CTCGAGCTGTTAAGAGATCCCGGGTTGGCCTGAAGGATCCTACAGGCCAC
AGCTGCATGC
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