CX295702
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPC_STAA8 (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain NCTC 8325) GN=clpC PE=1 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 1.051e-32 Identity = 74/128 (57.81%), Postives = 93/128 (72.66%), Query Frame = 3 Query: 3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386 E R+ ++ EIQ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE+R EKD AL RRFQPV + EPS D V IL GLR++YEAHH + EAI AAV LS R Sbjct: 258 EERLKKVMEEIQQAGNVILFIDELHTLVGAG----GAEGA-IDASNILKPALARGELQCIGATTLDEYRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVKLSNR 380
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPC_STAA3 (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain USA300) GN=clpC PE=3 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 1.051e-32 Identity = 74/128 (57.81%), Postives = 93/128 (72.66%), Query Frame = 3 Query: 3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386 E R+ ++ EIQ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE+R EKD AL RRFQPV + EPS D V IL GLR++YEAHH + EAI AAV LS R Sbjct: 258 EERLKKVMEEIQQAGNVILFIDELHTLVGAG----GAEGA-IDASNILKPALARGELQCIGATTLDEYRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVKLSNR 380
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPC_BACSU (Negative regulator of genetic competence clpC/mecB OS=Bacillus subtilis GN=clpC PE=1 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 3.058e-32 Identity = 70/128 (54.69%), Postives = 96/128 (75.00%), Query Frame = 3 Query: 3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386 E R+ ++ EI+++G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R EKD AL RRFQP+ + +PS +++++IL GLR++YEAHH T +AI AAV LS R Sbjct: 258 EDRLKKVMDEIRQAGNIILFIDELHTLIGAG----GAEGA-IDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDR 380 HSP 2 Score: 72.4034 bits (176), Expect = 2.691e-12 Identity = 43/95 (45.26%), Postives = 59/95 (62.11%), Query Frame = 2 Query: 422 ASMGDTSEIV---VESSLPSASDDD--EPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDP 691 AS+ DT + + VE + S + E + V DDIA V S W+G+PV +I E L+ +E L RVIGQDEAV A+++AV+R+R GLKDP Sbjct: 440 ASLRDTEQRLREQVEDTKKSWKEKQGQENSEVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDP 534
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_OCEIH (Chaperone protein clpB OS=Oceanobacillus iheyensis GN=clpB PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 3.994e-32 Identity = 71/128 (55.47%), Postives = 94/128 (73.44%), Query Frame = 3 Query: 3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386 E R+ ++ EI+++G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R EKD AL RRFQP+ + EP+ E+ ++IL GLR++YEAHH T EAI AA LS R Sbjct: 261 EDRLKKVMEEIRQAGNIILFIDELHTLIGAG----GAEGA-IDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDEPTLEETIQILNGLRDRYEAHHRVTITDEAIEAAASLSDR 383 HSP 2 Score: 72.4034 bits (176), Expect = 2.691e-12 Identity = 33/61 (54.10%), Postives = 47/61 (77.05%), Query Frame = 2 Query: 509 DDIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDP 691 +DIAAV S W+G+PV ++T DE L+ +E+ L RVIGQ EAV A+++A++R+R GLKDP Sbjct: 477 EDIAAVVSTWTGVPVSKLTKDETDRLLNMEKILHDRVIGQSEAVNAVAKAIRRARAGLKDP 537
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPC_STAES (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus epidermidis (strain ATCC 12228) GN=clpC PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 8.897e-32 Identity = 69/128 (53.91%), Postives = 92/128 (71.88%), Query Frame = 3 Query: 3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386 E R+ ++ EI ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE+R EKD AL RRFQP+ + EP+ ED + IL GLR++YEAHH + EA+ AA LS R Sbjct: 258 EERLKKVMEEIHQAGNVILFIDELHTLVGAG----GAEGA-IDASNILKPALARGELQCIGATTLDEYRKNIEKDAALERRFQPIQVDEPTVEDTIEILKGLRDRYEAHHRINISDEALEAAAKLSDR 380
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPC_STAEQ (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=clpC PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 8.897e-32 Identity = 69/128 (53.91%), Postives = 92/128 (71.88%), Query Frame = 3 Query: 3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386 E R+ ++ EI ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE+R EKD AL RRFQP+ + EP+ ED + IL GLR++YEAHH + EA+ AA LS R Sbjct: 258 EERLKKVMEEIHQAGNVILFIDELHTLVGAG----GAEGA-IDASNILKPALARGELQCIGATTLDEYRKNIEKDAALERRFQPIQVDEPTVEDTIEILKGLRDRYEAHHRINISDEALEAAAKLSDR 380
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPAA_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 1.982e-31 Identity = 69/126 (54.76%), Postives = 89/126 (70.63%), Query Frame = 3 Query: 3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS 380 E R+ L+ EI++S ++ILFIDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R EKD AL RRFQPV + EPS ++ ++IL GLRE+YE HH +T EAI AA LS Sbjct: 352 EERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGA-----IDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLHYTDEAIEAAAKLS 472 HSP 2 Score: 76.6406 bits (187), Expect = 1.427e-13 Identity = 39/79 (49.37%), Postives = 54/79 (68.35%), Query Frame = 2 Query: 455 ESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDP 691 +S S + D +V DI + S W+GIPV++++ DE L+ +EE L RVIGQDEAV AISRA++R+RVGLK+P Sbjct: 557 KSKAESEAGDAAGPIVTEADIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHTRVIGQDEAVKAISRAIRRARVGLKNP 635
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: HLYB_TREHY (Hemolysin B OS=Treponema hyodysenteriae GN=tlyB PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.589e-31 Identity = 68/128 (53.12%), Postives = 93/128 (72.66%), Query Frame = 3 Query: 3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386 E R+ ++ EI+K+ ++I+FIDE+HTLIG+G G +G LD +N+LKP+L RGE+QCI +TT +E++ EKD AL RRFQP+ + EPS ED + IL G++ KYE HH K+T EAINAA LS R Sbjct: 267 EERIKNIVLEIKKASNIIIFIDELHTLIGAG----GAEGA-LDAANMLKPALSRGEIQCIGATTINEYKKYIEKDGALVRRFQPINVEEPSIEDTIEILNGIKGKYEEHHKVKYTDEAINAAAVLSKR 389
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPC_STAHJ (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus haemolyticus (strain JCSC1435) GN=clpC PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.589e-31 Identity = 68/126 (53.97%), Postives = 91/126 (72.22%), Query Frame = 3 Query: 3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS 380 E R+ ++ EI ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE+R EKD AL RRFQP+ + EP+ ED + IL GLR++YEAHH + EA+ AA LS Sbjct: 258 EERLKKVMEEIHQAGNVILFIDELHTLVGAG----GAEGA-IDASNILKPALARGELQCIGATTLDEYRKNIEKDAALERRFQPIQVDEPTVEDTIAILKGLRDRYEAHHRINISDEALEAAAKLS 378
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPC_STAS1 (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=clpC PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 3.381e-31 Identity = 69/128 (53.91%), Postives = 92/128 (71.88%), Query Frame = 3 Query: 3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386 E R+ ++ EI ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE+R EKD AL RRFQPV + EP+ ED + IL GLR++YEAHH + EA+ +A LS R Sbjct: 258 EERLKKVMEEIHQAGNVILFIDELHTLVGAG----GAEGA-IDASNILKPALARGELQCIGATTLDEYRKNIEKDAALERRFQPVQVDEPTVEDTIEILKGLRDRYEAHHRINISDEALVSAAKLSHR 380 The following BLAST results are available for this feature:
BLAST of CX295702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 195
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Sequences
The
following sequences are available for this feature:
EST sequence >CX295702 ID=CX295702; Name=CX295702; organism=Citrus clementina; type=EST; length=710bpback to top |