CX295702

Overview
NameCX295702
Unique NameCX295702
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPA_BRANA (ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplastic (Fragment) OS=Brassica napus GN=CLPA PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.767e-31
Identity = 67/126 (53.17%), Postives = 90/126 (71.43%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS 380
            E RV  L+ EI++S ++ILFIDEVHTLIG+G          +D +N+LKP+L RGELQCI +TT DE+R   EKD AL RRFQPV + EP+ ++ ++IL GLRE+YE HH  ++T E++ AA  LS
Sbjct:  299 EERVKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGA-----IDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDESLVAAAQLS 419          

HSP 2 Score: 79.7221 bits (195), Expect = 1.686e-14
Identity = 41/79 (51.90%), Postives = 55/79 (69.62%), Query Frame = 2
Query:  455 ESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDP 691
            E S   +   DE  +V   DI  + S W+GI V++++ DE  LL+ +EE L KRVIGQDEAV AISRA++R+RVGLK+P
Sbjct:  502 EMSKAESETGDEGPMVTESDIQHIVSSWTGILVEKVSTDESDLLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNP 580          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPC_PEA (ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.837e-31
Identity = 67/126 (53.17%), Postives = 89/126 (70.63%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS 380
            E R+  L+ EI++S D+ILFIDEVHTLIG+G          +D +N+LKP+L RGELQCI +TT DE+R   EKD  L RRFQPV + EP+ ++ ++IL GLRE+YE HH  ++T EA+ AA  LS
Sbjct:  350 EERLKKLMEEIKQSDDIILFIDEVHTLIGAGAAEGA-----IDAANILKPALARGELQCIGATTLDEYRKHIEKDPDLERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDEALIAAAQLS 470          

HSP 2 Score: 80.4925 bits (197), Expect = 9.883e-15
Identity = 45/98 (45.92%), Postives = 61/98 (62.24%), Query Frame = 2
Query:  398 RLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDP 691
            R K  D+ A +    E   E S       DE  +V   DI  + S W+GIPV +++ADE   L+ +E+ L KR+IGQDEAV AISRA++R+RVGLK+P
Sbjct:  535 RDKEMDLKAQISALIEKGKEMSKAETETADEGPIVTEVDIQHIVSSWTGIPVDKVSADESDRLLKMEDTLHKRIIGQDEAVQAISRAIRRARVGLKNP 632          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_CAUCR (Chaperone protein clpB OS=Caulobacter crescentus GN=clpB PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.191e-30
Identity = 71/130 (54.62%), Postives = 90/130 (69.23%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTG-LDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ E+  + G +ILFIDE+HTL+G+G      KG G +D SNLLKP+L RGEL C+ +TT DE+R   EKD ALARRFQPV +SEP+ ED V IL GL+EKYE HH  + +  AI AA  LS R
Sbjct:  256 EERLKAVLGEVTAAEGSIILFIDEMHTLVGAG------KGDGAMDASNLLKPALARGELHCVGATTLDEYRKHVEKDAALARRFQPVFVSEPTVEDTVSILRGLKEKYEVHHGVRISDSAIVAAATLSNR 379          

HSP 2 Score: 73.559 bits (179), Expect = 1.208e-12
Identity = 34/68 (50.00%), Postives = 51/68 (75.00%), Query Frame = 2
Query:  491 PAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDPT 694
            P VV  + IAAV S W+G+PV+++   ER  L+ +E++L  RV+GQDEA+ A+S AV+R+R GL+DP+
Sbjct:  526 PEVVDAEQIAAVVSRWTGVPVEKMLEGEREKLLKMEDELRGRVVGQDEALEAVSDAVRRARAGLQDPS 593          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPAB_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.862e-30
Identity = 66/126 (52.38%), Postives = 89/126 (70.63%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS 380
            E R+  L+ EI++S ++ILFIDEVHTLIG+G          +D +N+LKP+L RGELQCI +TT DE+R   EKD AL RRFQPV + EP+ ++ ++IL GLRE+YE HH  ++T E + AA  LS
Sbjct:  350 EERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGA-----IDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDEDLVAAAQLS 470          

HSP 2 Score: 74.7146 bits (182), Expect = 5.423e-13
Identity = 38/85 (44.71%), Postives = 57/85 (67.06%), Query Frame = 2
Query:  449 VVESSLPSASDDDEPAVVGP----DDIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDP 691
            +++ +   +  + E A  GP     DI  + S W+GIPV++++ DE   L+ +EE L  R+IGQDEAV AISRA++R+RVGLK+P
Sbjct:  548 LIDKNKEVSKAESEAADTGPLVTEADIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHTRIIGQDEAVKAISRAIRRARVGLKNP 632          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_AGRT5 (Chaperone protein clpB OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=clpB PE=3 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 3.738e-30
Identity = 69/130 (53.08%), Postives = 92/130 (70.77%), Query Frame = 3
Query:    3 EARVTTLISEIQ-KSGDVILFIDEVHTLIGSGTVGRGNKGTG-LDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  +++E+Q ++G +ILFIDE+HTL+G+G      K  G +D SNLLKP+L RGEL C+ +TT DE+R   EKD ALARRFQPVL+ EP+ ED + IL GL+EKYE HH  + +  A+ AA  LS R
Sbjct:  257 EERLKAVLNEVQAENGGIILFIDEMHTLVGAG------KADGAMDASNLLKPALARGELHCVGATTLDEYRKHVEKDPALARRFQPVLVDEPNVEDTISILRGLKEKYEQHHKVRISDSALVAAATLSNR 380          

HSP 2 Score: 73.1738 bits (178), Expect = 1.578e-12
Identity = 35/65 (53.85%), Postives = 49/65 (75.38%), Query Frame = 2
Query:  497 VVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDP 691
            VV PD+IA V S W+GIPV ++   +R  L+ +E++L K V+GQ EAV A+S+AV+RSR GL+DP
Sbjct:  532 VVTPDNIAHVVSRWTGIPVDKMLEGQREKLLRMEDELAKSVVGQGEAVQAVSKAVRRSRAGLQDP 596          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_RICTY (Chaperone protein clpB OS=Rickettsia typhi GN=clpB PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.376e-30
Identity = 70/129 (54.26%), Postives = 90/129 (69.77%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+ +++SEI++S G++ILFIDE+H L+G+G V        +D SNLLKP L RGEL CI +TT DE+R   EKD ALARRFQPV + EPS ED + IL G++EKYE HH  + +  AI AA  LS R
Sbjct:  257 EKRLKSVLSEIKESSGEIILFIDELHLLVGTGKVEGA-----MDASNLLKPMLARGELHCIGATTLDEYRKYIEKDAALARRFQPVYVGEPSVEDTISILRGIKEKYELHHAVRISDSAIVAAATLSNR 380          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_RICPR (Chaperone protein clpB OS=Rickettsia prowazekii GN=clpB PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.376e-30
Identity = 70/129 (54.26%), Postives = 89/129 (68.99%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++SEI++S G++ILFIDE+H L+G+G V        +D SNLLKP L RGEL CI +TT DE+R   EKD ALARRFQPV + EPS ED + IL G++EKYE HH  + +  AI AA  LS R
Sbjct:  257 EKRLKAVLSEIKESSGEIILFIDELHLLVGTGKVDGA-----MDASNLLKPMLARGELHCIGATTLDEYRKYIEKDAALARRFQPVYVGEPSVEDTISILRGIKEKYELHHAVRISDSAIVAAATLSNR 380          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_WOLPM (Chaperone protein clpB OS=Wolbachia pipientis wMel GN=clpB PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.327e-30
Identity = 68/129 (52.71%), Postives = 90/129 (69.77%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  +I+E+ ++ G VILFIDE+HTL+G+G          +D SNLLKP+L RGE++CI +TT DE+R   EKD ALARRFQPV IS+P++ D + IL GL+E+YE HH  + T  AI AA  LS R
Sbjct:  258 EERLKAVINELSRAEGKVILFIDELHTLVGAGATSGA-----MDASNLLKPALARGEVRCIGATTLDEYRQHIEKDPALARRFQPVFISQPTETDTISILRGLKERYEVHHGIRITDGAIIAAATLSNR 381          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_RHIME (Chaperone protein clpB OS=Rhizobium meliloti GN=clpB PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.088e-29
Identity = 67/130 (51.54%), Postives = 92/130 (70.77%), Query Frame = 3
Query:    3 EARVTTLISEIQ-KSGDVILFIDEVHTLIGSGTVGRGNKGTG-LDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  +++E++ + G++ILFIDE+HTL+G+G      K  G +D SNLLKP+L RGEL C+ +TT DE+R   EKD ALARRFQPV++ EP+ ED + IL GL+EKYE HH  + +  A+ AA  LS R
Sbjct:  257 EERLKAVLNEVRSEGGEIILFIDEMHTLVGAG------KADGAMDASNLLKPALARGELHCVGATTLDEYRKHVEKDAALARRFQPVMVEEPTVEDTISILRGLKEKYEQHHKVRISDSALVAAAALSNR 380          

HSP 2 Score: 72.7886 bits (177), Expect = 2.061e-12
Identity = 35/65 (53.85%), Postives = 49/65 (75.38%), Query Frame = 2
Query:  497 VVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDP 691
            VV PD+IA + S W+GIPV ++   ER  L+ +E++L K V+GQ +AV A+SRAV+RSR GL+DP
Sbjct:  532 VVTPDNIAHIVSRWTGIPVDKMLEGERDKLLRMEDELAKWVVGQGDAVQAVSRAVRRSRAGLQDP 596          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_PROMA (Chaperone protein clpB OS=Prochlorococcus marinus GN=clpB PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.088e-29
Identity = 68/129 (52.71%), Postives = 87/129 (67.44%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ E+  S G ++LFIDE+HT++G+G  G       +D SNLLKP L RGEL+CI +TT +EHR   EKD AL RRFQ VLISEPS ED + IL GL+EKYE HH  + +  A+ AA  LS R
Sbjct:  257 EERLKAVLKEVTSSQGQIVLFIDEIHTVVGAGATGGA-----MDASNLLKPMLARGELRCIGATTINEHRQHIEKDPALERRFQQVLISEPSIEDTISILRGLKEKYEVHHGVRISDSALVAAAVLSNR 380          
The following BLAST results are available for this feature:
BLAST of CX295702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
CLPA_BRANA5.767e-3153.17ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PEA9.837e-3153.17ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_CAUCR2.191e-3054.62Chaperone protein clpB OS=Caulobacter crescentus G... [more]
CLPAB_SOLLC2.862e-3052.38ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_AGRT53.738e-3053.08Chaperone protein clpB OS=Agrobacterium tumefacien... [more]
CLPB_RICTY6.376e-3054.26Chaperone protein clpB OS=Rickettsia typhi GN=clpB... [more]
CLPB_RICPR6.376e-3054.26Chaperone protein clpB OS=Rickettsia prowazekii GN... [more]
CLPB_WOLPM8.327e-3052.71Chaperone protein clpB OS=Wolbachia pipientis wMel... [more]
CLPB_RHIME1.088e-2951.54Chaperone protein clpB OS=Rhizobium meliloti GN=cl... [more]
CLPB_PROMA1.088e-2952.71Chaperone protein clpB OS=Prochlorococcus marinus ... [more]

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Properties
Property NameValue
Genbank descriptionC05075A04SK DroRLeaf1 Citrus clementina cDNA clone C05075A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295702 ID=CX295702; Name=CX295702; organism=Citrus clementina; type=EST; length=710bp
TAGAGGCTCGTGTTACTACCTTAATAAGTGAGATACAGAAATCAGGTGAT
GTCATTCTTTTCATTGATGAAGTTCACACACTTATTGGTTCGGGCACAGT
GGGACGAGGAAACAAGGGTACTGGTCTTGACATTTCCAATCTATTGAAGC
CATCACTTGGGAGGGGTGAACTTCAGTGTATTGCATCCACAACTCAAGAT
GAACACAGGACCCAATTTGAGAAGGACAAAGCATTAGCCCGGAGATTCCA
GCCTGTATTGATTAGTGAACCAAGCCAGGAGGATGCAGTTAGGATACTCT
TGGGTCTGCGTGAGAAATATGAGGCCCATCACAACTGCAAATTCACGCTA
GAAGCAATAAATGCTGCTGTGCACCTGTCAGCAAGGTCCAGGGAAGTAGG
CTGAAATATGATGATGTTGTTGCCAGCATGGGTGATACTAGTGAAATTGT
TGTAGAATCCTCTTTGCCTTCTGCTTCAGATGATGATGAACCTGCAGTCG
TGGGACCTGATGATATTGCAGCAGTTGCTTCACTTTGGTCTGGGATCCCA
GTTCAGCAGATCACTGCCGATGAAAGAATGCTGCTAGTGGGTCTCGAAGA
GCAGCTTANAAAGCGAGTTATTGGTCAAGATGAGGCTGTTGCCGCCATTT
CTCGAGCTGTTAAGAGATCCCGGGTTGGCCTGAAGGATCCTACAGGCCAC
AGCTGCATGC
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