CX295702

Overview
NameCX295702
Unique NameCX295702
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_RICCN (Chaperone protein clpB OS=Rickettsia conorii GN=clpB PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.420e-29
Identity = 69/129 (53.49%), Postives = 89/129 (68.99%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++SEI++S G++ILFIDE+H L+G+G          +D SNLLKP L RGEL CI +TT DE+R   EKD ALARRFQPV +SEP+ ED + IL G++EKYE HH  + +  AI AA  LS R
Sbjct:  257 EERLKAVLSEIKESSGEIILFIDELHLLVGTGKTDGA-----MDASNLLKPMLARGELHCIGATTLDEYRKYIEKDAALARRFQPVYVSEPTVEDTISILRGIKEKYELHHAVRISDSAIVAAATLSNR 380          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_RHILO (Chaperone protein clpB OS=Rhizobium loti GN=clpB PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.420e-29
Identity = 69/130 (53.08%), Postives = 90/130 (69.23%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTG-LDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++SE+  + G++ILFIDE+HTL+G+G      K  G +D SNLLKP+L RGEL C+ +TT DE+R   EKD ALARRFQPV + EP+ ED V IL GL+EKYE HH  + +  A+ AA  LS R
Sbjct:  257 EERLKAVLSEVTSANGNIILFIDEMHTLVGAG------KADGAMDASNLLKPALARGELHCVGATTLDEYRKHVEKDPALARRFQPVFVDEPTVEDTVSILRGLKEKYEQHHKVRISDSALVAAATLSNR 380          

HSP 2 Score: 73.559 bits (179), Expect = 1.208e-12
Identity = 38/85 (44.71%), Postives = 55/85 (64.71%), Query Frame = 2
Query:  452 VESSLPSASDDDEPA-----VVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDP 691
            +E  L  A   D  A     VV PD +A + S W+GIPV ++   ER  L+ +E+++ KRV+GQ EAV A+S+AV+R+R GL+DP
Sbjct:  510 LEKKLKEAEAQDGKAGMVEEVVTPDHVAHIVSRWTGIPVDKMLQGERDKLLRMEDEIGKRVVGQGEAVQAVSKAVRRARAGLQDP 594          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB2_SYNE7 (Chaperone protein clpB 2 OS=Synechococcus elongatus (strain PCC 7942) GN=clpB2 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.420e-29
Identity = 66/129 (51.16%), Postives = 88/129 (68.22%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ E+  S G ++LFIDE+HT++G+G    G +G+ +D  NLLKP L RGEL+CI +TT DE+R   EKD AL RRFQ V +S+PS ED + IL GL+E+YE HH  K T  A+ AA  LS R
Sbjct:  260 EERLRAVLHEVTHSDGQMVLFIDELHTVVGAGA---GQQGSAMDAGNLLKPMLARGELRCIGATTTDEYRRTIEKDPALERRFQQVYVSQPSVEDTIAILRGLKERYEGHHGVKITDGALMAAAKLSHR 385          

HSP 2 Score: 68.5514 bits (166), Expect = 3.886e-11
Identity = 31/61 (50.82%), Postives = 45/61 (73.77%), Query Frame = 2
Query:  512 DIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDPT 694
            DIA + + W+ IPVQ++   ER  L+ LE  L +RVIGQDEAV A++ A++R+R G+KDP+
Sbjct:  547 DIAEIVARWTNIPVQRLLESERQKLLQLESFLHQRVIGQDEAVVAVAAAIRRARAGMKDPS 607          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_RHOPA (Chaperone protein clpB OS=Rhodopseudomonas palustris GN=clpB PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.855e-29
Identity = 70/130 (53.85%), Postives = 90/130 (69.23%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTG-LDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  +++E+  + G +ILFIDE+HTL+G+G      K  G +D SNLLKP+L RGEL CI +TT DE+R   EKD ALARRFQPV +SEP+ ED V IL GL++KYE HH  +    A+ AAV LS R
Sbjct:  258 EERLKAVLNEVTAAEGGIILFIDEMHTLVGAG------KADGAMDASNLLKPALARGELHCIGATTLDEYRKHVEKDAALARRFQPVFVSEPTVEDTVSILRGLKDKYEQHHGVRIADSALVAAVTLSNR 381          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_BRAJA (Chaperone protein clpB OS=Bradyrhizobium japonicum GN=clpB PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.423e-29
Identity = 70/130 (53.85%), Postives = 89/130 (68.46%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTG-LDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ E+  S G  ILFIDE+HTLIG+G      KG G +D SNLLKP+L RGEL CI +TT DE++   EKD ALARRFQP+ +SEPS ED + IL GL++KYE HH  + T  A+ A+  LS R
Sbjct:  258 EERLKAVLQEVTGSEGTFILFIDEMHTLIGAG------KGDGAMDASNLLKPALARGELHCIGATTLDEYQKHVEKDAALARRFQPIFVSEPSVEDTISILRGLKDKYEQHHGVRITDSALVASATLSNR 381          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB1_SYNY3 (Chaperone protein clpB 1 OS=Synechocystis sp. (strain PCC 6803) GN=clpB1 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.164e-29
Identity = 68/130 (52.31%), Postives = 89/130 (68.46%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTG-LDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+ +++ E+  S G +ILFIDEVHT++G+G    G +G+G +D  NLLKP L RGEL+CI +TT DE+R   EKD AL RRFQ V + +PS +D + IL GL+EKYE HH  K T  A+ AA  LS R
Sbjct:  258 EERLRSVMKEVTNSDGQIILFIDEVHTVVGAG----GREGSGSMDAGNLLKPMLARGELRCIGATTLDEYRKNIEKDPALERRFQQVYVKQPSVDDTISILRGLKEKYEVHHGVKITDSALVAAATLSHR 383          

HSP 2 Score: 67.781 bits (164), Expect = 6.629e-11
Identity = 39/105 (37.14%), Postives = 60/105 (57.14%), Query Frame = 2
Query:  389 QGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAV---VGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDPT 694
            + +++KY ++     D  E   ES L          +   V   DIA + + W+GIP+ ++   ER  L+ LE  L +RVIGQ EAVAA+S A++R+R G+KDP+
Sbjct:  508 KAAKIKYGELEVLQHDIEE--KESKLLEIQGSGNTLLREQVTESDIAEIVAGWTGIPMNRLMETERQKLLQLEGHLHQRVIGQKEAVAAVSAAIRRARAGMKDPS 610          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_BRUSU (Chaperone protein clpB OS=Brucella suis GN=clpB PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.133e-29
Identity = 66/129 (51.16%), Postives = 88/129 (68.22%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++SE+Q + G +ILFIDE+HTL+G+G          +D SNLLKP+L RGEL C+ +TT +E+R   EKD ALARRFQPV + EP+ ED + IL GL+EKYE HH  + +  A+ AA  LS R
Sbjct:  257 EERLKAVLSEVQTAAGQIILFIDEMHTLVGAGKTDGA-----MDASNLLKPALARGELHCVGATTLEEYRKYVEKDAALARRFQPVFVDEPTVEDTISILRGLKEKYEQHHKVRVSDSALVAAATLSNR 380          

HSP 2 Score: 72.4034 bits (176), Expect = 2.691e-12
Identity = 34/64 (53.12%), Postives = 48/64 (75.00%), Query Frame = 2
Query:  500 VGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDP 691
            V PD +A V S W+GIPV ++   ER  L+ +E+++ KRV+GQ EAV AIS+AV+R+R GL+DP
Sbjct:  531 VTPDHVAQVISRWTGIPVDRMLEGEREKLLRMEDEIGKRVVGQGEAVQAISKAVRRARAGLQDP 594          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_BRUME (Chaperone protein clpB OS=Brucella melitensis GN=clpB PE=3 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 4.133e-29
Identity = 66/129 (51.16%), Postives = 88/129 (68.22%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++SE+Q + G +ILFIDE+HTL+G+G          +D SNLLKP+L RGEL C+ +TT +E+R   EKD ALARRFQPV + EP+ ED + IL GL+EKYE HH  + +  A+ AA  LS R
Sbjct:  257 EERLKAVLSEVQTAAGQIILFIDEMHTLVGAGKTDGA-----MDASNLLKPALARGELHCVGATTLEEYRKYVEKDAALARRFQPVFVDEPTVEDTISILRGLKEKYEQHHKVRVSDSALVAAAMLSNR 380          

HSP 2 Score: 72.4034 bits (176), Expect = 2.691e-12
Identity = 34/64 (53.12%), Postives = 48/64 (75.00%), Query Frame = 2
Query:  500 VGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDP 691
            V PD +A V S W+GIPV ++   ER  L+ +E+++ KRV+GQ EAV AIS+AV+R+R GL+DP
Sbjct:  531 VTPDHVAQVISRWTGIPVDRMLEGEREKLLRMEDEIGKRVVGQGEAVQAISKAVRRARAGLQDP 594          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB2_THEEB (Chaperone protein clpB 2 OS=Thermosynechococcus elongatus (strain BP-1) GN=clpB2 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.133e-29
Identity = 66/129 (51.16%), Postives = 88/129 (68.22%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ E+  S G ++LFIDE+HT++G+G     N+ + +D SNLLKP L RGEL+CI +TT DE+R   EKD AL RRFQ V I +PS ED + IL GL+++YE HHN K T  A+ AA  LS R
Sbjct:  257 EDRLKAVLHEVTHSEGQIVLFIDELHTVVGAGA----NQNSSMDASNLLKPMLARGELRCIGATTLDEYRKYIEKDAALERRFQQVYIGQPSVEDTISILRGLKDRYEIHHNVKITDSALVAAAMLSDR 381          

HSP 2 Score: 70.4774 bits (171), Expect = 1.023e-11
Identity = 31/60 (51.67%), Postives = 47/60 (78.33%), Query Frame = 2
Query:  512 DIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDP 691
            DIA + + W+GIP+Q++ A ER  L+ LE+ L +RVIGQ +AVAA++ A++R+R G+KDP
Sbjct:  549 DIAEIVAKWTGIPLQKLMASERQKLLQLEQVLHQRVIGQSDAVAAVAAAIRRARAGMKDP 608          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPE_LACLA (ATP-dependent Clp protease ATP-binding subunit clpE OS=Lactococcus lactis subsp. lactis GN=clpE PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.398e-29
Identity = 64/128 (50.00%), Postives = 90/128 (70.31%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  L+ EI+K  DVI+FIDE+H ++G+G+ G GN    +D  N+LKP+L RGELQ + +TT +E+R   EKD AL RR QPV + EPS ++ + IL G++ +YE +H+ K+T EAI AA HLS R
Sbjct:  202 EERMQKLMDEIRKRNDVIMFIDEIHEIVGAGSAGDGN----MDAGNILKPALARGELQLVGATTLNEYRI-IEKDAALERRMQPVKVDEPSVDETITILRGIQARYEDYHHVKYTDEAIEAAAHLSNR 324          
The following BLAST results are available for this feature:
BLAST of CX295702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
CLPB_RICCN1.420e-2953.49Chaperone protein clpB OS=Rickettsia conorii GN=cl... [more]
CLPB_RHILO1.420e-2953.08Chaperone protein clpB OS=Rhizobium loti GN=clpB P... [more]
CLPB2_SYNE71.420e-2951.16Chaperone protein clpB 2 OS=Synechococcus elongatu... [more]
CLPB_RHOPA1.855e-2953.85Chaperone protein clpB OS=Rhodopseudomonas palustr... [more]
CLPB_BRAJA2.423e-2953.85Chaperone protein clpB OS=Bradyrhizobium japonicum... [more]
CLPB1_SYNY33.164e-2952.31Chaperone protein clpB 1 OS=Synechocystis sp. (str... [more]
CLPB_BRUSU4.133e-2951.16Chaperone protein clpB OS=Brucella suis GN=clpB PE... [more]
CLPB_BRUME4.133e-2951.16Chaperone protein clpB OS=Brucella melitensis GN=c... [more]
CLPB2_THEEB4.133e-2951.16Chaperone protein clpB 2 OS=Thermosynechococcus el... [more]
CLPE_LACLA5.398e-2950.00ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC05075A04SK DroRLeaf1 Citrus clementina cDNA clone C05075A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295702 ID=CX295702; Name=CX295702; organism=Citrus clementina; type=EST; length=710bp
TAGAGGCTCGTGTTACTACCTTAATAAGTGAGATACAGAAATCAGGTGAT
GTCATTCTTTTCATTGATGAAGTTCACACACTTATTGGTTCGGGCACAGT
GGGACGAGGAAACAAGGGTACTGGTCTTGACATTTCCAATCTATTGAAGC
CATCACTTGGGAGGGGTGAACTTCAGTGTATTGCATCCACAACTCAAGAT
GAACACAGGACCCAATTTGAGAAGGACAAAGCATTAGCCCGGAGATTCCA
GCCTGTATTGATTAGTGAACCAAGCCAGGAGGATGCAGTTAGGATACTCT
TGGGTCTGCGTGAGAAATATGAGGCCCATCACAACTGCAAATTCACGCTA
GAAGCAATAAATGCTGCTGTGCACCTGTCAGCAAGGTCCAGGGAAGTAGG
CTGAAATATGATGATGTTGTTGCCAGCATGGGTGATACTAGTGAAATTGT
TGTAGAATCCTCTTTGCCTTCTGCTTCAGATGATGATGAACCTGCAGTCG
TGGGACCTGATGATATTGCAGCAGTTGCTTCACTTTGGTCTGGGATCCCA
GTTCAGCAGATCACTGCCGATGAAAGAATGCTGCTAGTGGGTCTCGAAGA
GCAGCTTANAAAGCGAGTTATTGGTCAAGATGAGGCTGTTGCCGCCATTT
CTCGAGCTGTTAAGAGATCCCGGGTTGGCCTGAAGGATCCTACAGGCCAC
AGCTGCATGC
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