CX295702

Overview
NameCX295702
Unique NameCX295702
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPC_CYACA (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Cyanidium caldarium GN=clpC PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.398e-29
Identity = 65/126 (51.59%), Postives = 87/126 (69.05%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS 380
            E R+  ++ EI+ + +VIL IDEVHTLIG+G          +D +N+LKP+L RGELQCI +TT +E+R   EKD AL RRFQPV++ EP+ E+ + IL GLR++YEAHH  K +  AI AA  LS
Sbjct:  288 EERLKKIMDEIRMADNVILVIDEVHTLIGAGAAEGA-----IDAANILKPALARGELQCIGATTLEEYRKHIEKDAALERRFQPVMVEEPTVEETIEILRGLRDRYEAHHRLKISDSAIVAAAKLS 408          

HSP 2 Score: 76.6406 bits (187), Expect = 1.427e-13
Identity = 34/67 (50.75%), Postives = 50/67 (74.63%), Query Frame = 2
Query:  491 PAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDP 691
            P +V  DDIA + S W+GIPV ++T  E   L+ +EE L  R++GQ+EAV A+S+A++R+RVGLK+P
Sbjct:  502 PPIVNEDDIANIVSSWTGIPVSKLTKSESEKLLHMEETLHSRIVGQNEAVIAVSKAIRRARVGLKNP 568          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_PHOPR (Chaperone protein clpB OS=Photobacterium profundum GN=clpB PE=3 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 5.398e-29
Identity = 67/130 (51.54%), Postives = 91/130 (70.00%), Query Frame = 3
Query:    3 EARVTTLISEI-QKSGDVILFIDEVHTLIGSGTVGRGNKGTG-LDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+ ++++E+ Q+ G VILFIDE+HT++G+G      KG G +D  N+LKP+L RGEL C+ +TT DE+R   EKD AL RRFQ VL+ EP+ ED + IL GL+E+YE HH+ + T  AI AA  LS R
Sbjct:  256 EERLKSVLNELSQEEGSVILFIDELHTMVGAG------KGEGSMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVLVDEPTVEDTIAILRGLKERYELHHHVEITDPAIVAAARLSHR 379          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPC_CHLPN (Probable ATP-dependent Clp protease ATP-binding subunit OS=Chlamydia pneumoniae GN=clpC PE=3 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 7.050e-29
Identity = 60/126 (47.62%), Postives = 87/126 (69.05%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS 380
            E R+  ++ E++K G+++LFIDE+HT++G+G          +D SN+LKP+L RGE+QCI +TT DE+R   EKD AL RRFQ +++  PS ++ + IL GL++KYE HHN   T EA+ AA  LS
Sbjct:  282 EERIKAVMDEVRKHGNILLFIDELHTIVGAGAAEGA-----IDASNILKPALARGEIQCIGATTIDEYRKHIEKDAALERRFQKIVVHPPSVDETIEILRGLKKKYEEHHNVFITEEALKAAATLS 402          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_VIBPA (Chaperone protein clpB OS=Vibrio parahaemolyticus GN=clpB PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.050e-29
Identity = 68/130 (52.31%), Postives = 91/130 (70.00%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTG-LDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+ ++++E+ K  G+VILFIDE+HT++G+G      KG G +D  N+LKP+L RGEL C+ +TT DE+R   EKD AL RRFQ VL+ EP+ ED V IL GL+E+YE HH+ + T  AI AA  LS R
Sbjct:  256 EERLKSVLNELAKEEGNVILFIDELHTMVGAG------KGEGSMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVLVDEPTVEDTVAILRGLKERYELHHHVEITDPAIVAAASLSHR 379          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_PSESM (Chaperone protein clpB OS=Pseudomonas syringae pv. tomato GN=clpB PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.050e-29
Identity = 67/130 (51.54%), Postives = 89/130 (68.46%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTG-LDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+ +L++E+ K  G +ILFIDE+HT++G+G      KG G +D  N+LKP+L RGEL C+ +TT +E+R   EKD AL RRFQ VL+ EPS+ED + IL GL+E+YE HH    T  AI AA  LS R
Sbjct:  256 EERLKSLLNELSKQEGQIILFIDELHTMVGAG------KGEGSMDAGNMLKPALARGELHCVGATTLNEYRQYIEKDAALERRFQKVLVDEPSEEDTIAILRGLKERYEVHHKVAITDGAIIAAAKLSHR 379          

HSP 2 Score: 67.3958 bits (163), Expect = 8.658e-11
Identity = 34/64 (53.12%), Postives = 44/64 (68.75%), Query Frame = 2
Query:  500 VGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDP 691
            V  ++IA V S W+GIPV ++   ER  L+ +E  L  RVIGQ+EAV A+S AV+RSR GL DP
Sbjct:  531 VTEEEIAEVVSKWTGIPVSKMLEGEREKLLRMETLLHNRVIGQEEAVVAVSNAVRRSRAGLSDP 594          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_DESVH (Chaperone protein clpB OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=clpB PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.050e-29
Identity = 66/129 (51.16%), Postives = 88/129 (68.22%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ E++KS G +I+FIDE+HT++G+G          +D SNLLKP L RGEL CI +TT DE+R   EKD AL RRFQPVL+ EP+ EDA+ IL GL+E++E HH  + +  AI  AV LS R
Sbjct:  261 EERLKAVLKEVEKSEGRIIMFIDELHTIVGAGKTDGA-----MDASNLLKPMLARGELHCIGATTLDEYRKYIEKDPALERRFQPVLVDEPTIEDAISILRGLKERFEVHHGVRISDSAIVEAVTLSHR 384          

HSP 2 Score: 68.9366 bits (167), Expect = 2.976e-11
Identity = 33/65 (50.77%), Postives = 46/65 (70.77%), Query Frame = 2
Query:  500 VGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDPT 694
            V PDDIA + + W+GIPV ++   ER  L+ L + L +RV+GQ+EAV A+S AV R+R GL DP+
Sbjct:  536 VRPDDIAEIVARWTGIPVTRLLESEREKLLRLADVLHERVVGQEEAVDAVSEAVLRARAGLSDPS 600          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_VIBVY (Chaperone protein clpB OS=Vibrio vulnificus (strain YJ016) GN=clpB PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.207e-29
Identity = 66/130 (50.77%), Postives = 91/130 (70.00%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTG-LDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+ ++++E+ K  G++ILFIDE+HT++G+G      KG G +D  N+LKP+L RGEL C+ +TT DE+R   EKD AL RRFQ VL+ EP+ ED + IL GL+E+YE HH+ + T  AI AA  LS R
Sbjct:  256 EERLKSVLNELSKEEGNIILFIDELHTMVGAG------KGEGSMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDPALERRFQKVLVDEPTVEDTIAILRGLKERYELHHHVEITDPAIVAAASLSHR 379          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_VIBVU (Chaperone protein clpB OS=Vibrio vulnificus GN=clpB PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.207e-29
Identity = 66/130 (50.77%), Postives = 91/130 (70.00%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTG-LDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+ ++++E+ K  G++ILFIDE+HT++G+G      KG G +D  N+LKP+L RGEL C+ +TT DE+R   EKD AL RRFQ VL+ EP+ ED + IL GL+E+YE HH+ + T  AI AA  LS R
Sbjct:  256 EERLKSVLNELSKEEGNIILFIDELHTMVGAG------KGEGSMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDPALERRFQKVLVDEPTVEDTIAILRGLKERYELHHHVEITDPAIVAAASLSHR 379          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_HAEDU (Chaperone protein clpB OS=Haemophilus ducreyi GN=clpB PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.207e-29
Identity = 67/129 (51.94%), Postives = 86/129 (66.67%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  +++E+ K  G VILFIDE+HT++G+G          +D  NLLKPSL RGEL C+ +TT DE+R   EKD AL RRFQ VL+ EPS ED + IL GL+E+YE HH+ + T  AI AA  LS R
Sbjct:  254 EERLKAVLNELAKEEGQVILFIDEIHTMVGAGKTDGA-----MDAGNLLKPSLARGELHCVGATTLDEYRQYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEIHHHVQITDPAIVAAATLSHR 377          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_BACTN (Chaperone protein clpB OS=Bacteroides thetaiotaomicron GN=clpB PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.207e-29
Identity = 67/130 (51.54%), Postives = 94/130 (72.31%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTG-LDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+ ++++E++KS GD+ILFIDE+HTL+G+G      KG G +D +N+LKP+L RGEL+ I +TT DE++  FEKDKAL RRFQ V + EP     + IL GL+E+YE HH+ +   +AI AAV LS+R
Sbjct:  254 EERLKSVVNEVKKSEGDIILFIDEIHTLVGAG------KGEGAMDAANILKPALARGELRSIGATTLDEYQKYFEKDKALERRFQIVQVDEPDTLSTISILRGLKERYENHHHVRIKDDAIIAAVELSSR 377          

HSP 2 Score: 70.8626 bits (172), Expect = 7.830e-12
Identity = 34/64 (53.12%), Postives = 48/64 (75.00%), Query Frame = 2
Query:  500 VGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDP 691
            V  +DIA V S W+GIPV ++   E+  L+ LE++L +RVIGQDEA+ A++ AV+RSR GL+DP
Sbjct:  529 VDAEDIADVVSRWTGIPVSKMMQSEKDKLLHLEDELHQRVIGQDEAIEAVADAVRRSRAGLQDP 592          
The following BLAST results are available for this feature:
BLAST of CX295702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
CLPC_CYACA5.398e-2951.59ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_PHOPR5.398e-2951.54Chaperone protein clpB OS=Photobacterium profundum... [more]
CLPC_CHLPN7.050e-2947.62Probable ATP-dependent Clp protease ATP-binding su... [more]
CLPB_VIBPA7.050e-2952.31Chaperone protein clpB OS=Vibrio parahaemolyticus ... [more]
CLPB_PSESM7.050e-2951.54Chaperone protein clpB OS=Pseudomonas syringae pv.... [more]
CLPB_DESVH7.050e-2951.16Chaperone protein clpB OS=Desulfovibrio vulgaris (... [more]
CLPB_VIBVY9.207e-2950.77Chaperone protein clpB OS=Vibrio vulnificus (strai... [more]
CLPB_VIBVU9.207e-2950.77Chaperone protein clpB OS=Vibrio vulnificus GN=clp... [more]
CLPB_HAEDU9.207e-2951.94Chaperone protein clpB OS=Haemophilus ducreyi GN=c... [more]
CLPB_BACTN9.207e-2951.54Chaperone protein clpB OS=Bacteroides thetaiotaomi... [more]

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Properties
Property NameValue
Genbank descriptionC05075A04SK DroRLeaf1 Citrus clementina cDNA clone C05075A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295702 ID=CX295702; Name=CX295702; organism=Citrus clementina; type=EST; length=710bp
TAGAGGCTCGTGTTACTACCTTAATAAGTGAGATACAGAAATCAGGTGAT
GTCATTCTTTTCATTGATGAAGTTCACACACTTATTGGTTCGGGCACAGT
GGGACGAGGAAACAAGGGTACTGGTCTTGACATTTCCAATCTATTGAAGC
CATCACTTGGGAGGGGTGAACTTCAGTGTATTGCATCCACAACTCAAGAT
GAACACAGGACCCAATTTGAGAAGGACAAAGCATTAGCCCGGAGATTCCA
GCCTGTATTGATTAGTGAACCAAGCCAGGAGGATGCAGTTAGGATACTCT
TGGGTCTGCGTGAGAAATATGAGGCCCATCACAACTGCAAATTCACGCTA
GAAGCAATAAATGCTGCTGTGCACCTGTCAGCAAGGTCCAGGGAAGTAGG
CTGAAATATGATGATGTTGTTGCCAGCATGGGTGATACTAGTGAAATTGT
TGTAGAATCCTCTTTGCCTTCTGCTTCAGATGATGATGAACCTGCAGTCG
TGGGACCTGATGATATTGCAGCAGTTGCTTCACTTTGGTCTGGGATCCCA
GTTCAGCAGATCACTGCCGATGAAAGAATGCTGCTAGTGGGTCTCGAAGA
GCAGCTTANAAAGCGAGTTATTGGTCAAGATGAGGCTGTTGCCGCCATTT
CTCGAGCTGTTAAGAGATCCCGGGTTGGCCTGAAGGATCCTACAGGCCAC
AGCTGCATGC
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