CX295702

Overview
NameCX295702
Unique NameCX295702
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPC_CHLTR (Probable ATP-dependent Clp protease ATP-binding subunit OS=Chlamydia trachomatis GN=clpC PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.679e-28
Identity = 60/126 (47.62%), Postives = 87/126 (69.05%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS 380
            E R+  ++ E++K G+++LFIDE+HT++G+G          +D S++LKP+L RGE+QCI +TT DE+R   EKD AL RRFQ +++  PS ++ V IL GL++KYE HHN   T EA+ AA  LS
Sbjct:  284 EERIKAVMDEVRKHGNILLFIDELHTIVGAGAAEGA-----IDASHILKPALARGEIQCIGATTLDEYRKHIEKDAALERRFQKIVVQPPSVDETVEILRGLKKKYEEHHNVFITDEALVAAAKLS 404          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPC_CHLMU (Probable ATP-dependent Clp protease ATP-binding subunit OS=Chlamydia muridarum GN=clpC PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.679e-28
Identity = 60/126 (47.62%), Postives = 87/126 (69.05%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS 380
            E R+  ++ E++K G+++LFIDE+HT++G+G          +D S++LKP+L RGE+QCI +TT DE+R   EKD AL RRFQ +++  PS ++ V IL GL++KYE HHN   T EA+ AA  LS
Sbjct:  301 EERIKAVMDEVRKHGNILLFIDELHTIVGAGAAEGA-----IDASHILKPALARGEIQCIGATTLDEYRKHIEKDAALERRFQKIVVQPPSVDETVEILRGLKKKYEEHHNVFITDEALVAAAKLS 421          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_PROMP (Chaperone protein clpB OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=clpB PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.679e-28
Identity = 64/129 (49.61%), Postives = 87/129 (67.44%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ +++ S G +ILFIDE+HT++G+G  G       LD SNLLKP L RGEL+CI +TT +EH+   EKD AL RRFQ + I+ PS +D + IL GLREKYE HH+ + +  A+ AA  LS R
Sbjct:  254 EERIKNVLKKVKSSEGKIILFIDEIHTVVGAGATGGS-----LDASNLLKPMLARGELRCIGATTINEHKQNIEKDPALERRFQKIKINAPSVDDTISILRGLREKYEVHHSVRISDNALVAAASLSER 377          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_HELPY (Chaperone protein clpB OS=Helicobacter pylori GN=clpB PE=3 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.679e-28
Identity = 64/128 (50.00%), Postives = 91/128 (71.09%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  +I E++KS +VILFIDE+HT++G+G     ++G G+D +N+LKP+L RGEL  I +TT  E+R  FEKD AL RRFQP+L++EPS  +A++IL GL+E  E HHN      A+ A+  LS+R
Sbjct:  254 EERLKKVIEEVKKSANVILFIDEIHTIVGAGA----SEG-GMDAANILKPALARGELHTIGATTLKEYRKYFEKDMALQRRFQPILLNEPSINEALQILRGLKETLETHHNITINDSALIASAKLSSR 376          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_HELPJ (Chaperone protein clpB OS=Helicobacter pylori J99 GN=clpB PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.679e-28
Identity = 64/128 (50.00%), Postives = 91/128 (71.09%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  +I E++KS +VILFIDE+HT++G+G     ++G G+D +N+LKP+L RGEL  I +TT  E+R  FEKD AL RRFQP+L++EPS  +A++IL GL+E  E HHN      A+ A+  LS+R
Sbjct:  254 EERLKKVIEEVKKSANVILFIDEIHTIVGAGA----SEG-GMDAANILKPALARGELHTIGATTLKEYRKYFEKDMALQRRFQPILLNEPSINEALQILRGLKETLETHHNITINDSALIASAKLSSR 376          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_COXBU (Chaperone protein clpB OS=Coxiella burnetii GN=clpB PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.679e-28
Identity = 68/130 (52.31%), Postives = 87/130 (66.92%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTG-LDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ +I K  G VILFIDE+HT++G+G      K  G +D  N+LKP+L RGEL C+ +TT DE+R   EKD AL RRFQ VL+ EPS EDA+ IL GL+E+YE HH  + T  AI AA  LS R
Sbjct:  256 EERLKAVLKDIAKEEGRVILFIDELHTMVGAG------KAEGAMDAGNMLKPALARGELHCVGATTLDEYRKYIEKDAALERRFQKVLVEEPSTEDAIAILRGLKERYEVHHGVEITDPAIIAAATLSQR 379          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_PSEAE (Chaperone protein clpB OS=Pseudomonas aeruginosa GN=clpB PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.569e-28
Identity = 67/130 (51.54%), Postives = 87/130 (66.92%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTG-LDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  +++E+ K  G VILFIDE+HT++G+G      K  G +D  N+LKP+L RGEL C+ +TT DE+R   EKD AL RRFQ VL+ EPS+ED + IL GL+E+YE HH    T  AI AA  LS R
Sbjct:  256 EERLKAVLNELGKQEGRVILFIDELHTMVGAG------KAEGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVLVDEPSEEDTIAILRGLKERYEVHHGVSITDGAIIAAAKLSHR 379          

HSP 2 Score: 72.0182 bits (175), Expect = 3.515e-12
Identity = 35/64 (54.69%), Postives = 47/64 (73.44%), Query Frame = 2
Query:  500 VGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDP 691
            V  ++IA V S W+GIPV ++   ER  L+ +E++L +RVIGQDEAV A+S AV+RSR GL DP
Sbjct:  531 VTDEEIAEVVSKWTGIPVSKMLEGEREKLLRMEQELHRRVIGQDEAVVAVSNAVRRSRAGLADP 594          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_CHLTR (Chaperone protein clpB OS=Chlamydia trachomatis GN=clpB PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.569e-28
Identity = 67/129 (51.94%), Postives = 88/129 (68.22%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+ +++  ++ S G+ ILFIDEVHTL+G+G          +D +NLLKP+L RG L CI +TT +E++   EKD AL RRFQP+ ++EPS EDAV IL GLREKYE  H  + T  A+NAAV LS R
Sbjct:  255 EERLKSVLKGVEASEGECILFIDEVHTLVGAGATDGA-----MDAANLLKPALARGTLHCIGATTLNEYQKYIEKDAALERRFQPIFVTEPSLEDAVFILRGLREKYEIFHGVRITEGALNAAVVLSYR 378          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_CHLCV (Chaperone protein clpB OS=Chlamydophila caviae GN=clpB PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.569e-28
Identity = 66/129 (51.16%), Postives = 88/129 (68.22%), Query Frame = 3
Query:    3 EARVTTLISEIQK-SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+ +++ +++   G+ ILFIDEVHTL+G+G          +D +NLLKP+L RG L CI +TT +E++   EKD AL RRFQP+ ++EPS EDAV IL GLREKYE  H  + T  A+NAAV LS R
Sbjct:  255 EERLKSVLKDVESVDGESILFIDEVHTLVGAGATDGA-----MDAANLLKPALARGTLHCIGATTLNEYQKYIEKDAALERRFQPIFVTEPSLEDAVFILRGLREKYEIFHGVRITEGALNAAVLLSYR 378          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPE_BACSU (ATP-dependent Clp protease ATP-binding subunit clpE OS=Bacillus subtilis GN=clpE PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.968e-28
Identity = 67/128 (52.34%), Postives = 93/128 (72.66%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  LI+E+++  +VILFIDE+H L+G+G+     +G+ +D  N+LKP+L RGELQ I +TT  E+R Q EKD AL RRFQPV++ EPS E A+ IL G+++KYEA+H   F+ EAI A V LS+R
Sbjct:  169 EERMKQLITELKERKNVILFIDEIHLLVGAGSA----EGS-MDAGNILKPALARGELQVIGATTLKEYR-QIEKDAALERRFQPVMVQEPSIEQAILILQGIKDKYEAYHGVTFSDEAIKACVTLSSR 290          
The following BLAST results are available for this feature:
BLAST of CX295702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
CLPC_CHLTR2.679e-2847.62Probable ATP-dependent Clp protease ATP-binding su... [more]
CLPC_CHLMU2.679e-2847.62Probable ATP-dependent Clp protease ATP-binding su... [more]
CLPB_PROMP2.679e-2849.61Chaperone protein clpB OS=Prochlorococcus marinus ... [more]
CLPB_HELPY2.679e-2850.00Chaperone protein clpB OS=Helicobacter pylori GN=c... [more]
CLPB_HELPJ2.679e-2850.00Chaperone protein clpB OS=Helicobacter pylori J99 ... [more]
CLPB_COXBU2.679e-2852.31Chaperone protein clpB OS=Coxiella burnetii GN=clp... [more]
CLPB_PSEAE4.569e-2851.54Chaperone protein clpB OS=Pseudomonas aeruginosa G... [more]
CLPB_CHLTR4.569e-2851.94Chaperone protein clpB OS=Chlamydia trachomatis GN... [more]
CLPB_CHLCV4.569e-2851.16Chaperone protein clpB OS=Chlamydophila caviae GN=... [more]
CLPE_BACSU5.968e-2852.34ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC05075A04SK DroRLeaf1 Citrus clementina cDNA clone C05075A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295702 ID=CX295702; Name=CX295702; organism=Citrus clementina; type=EST; length=710bp
TAGAGGCTCGTGTTACTACCTTAATAAGTGAGATACAGAAATCAGGTGAT
GTCATTCTTTTCATTGATGAAGTTCACACACTTATTGGTTCGGGCACAGT
GGGACGAGGAAACAAGGGTACTGGTCTTGACATTTCCAATCTATTGAAGC
CATCACTTGGGAGGGGTGAACTTCAGTGTATTGCATCCACAACTCAAGAT
GAACACAGGACCCAATTTGAGAAGGACAAAGCATTAGCCCGGAGATTCCA
GCCTGTATTGATTAGTGAACCAAGCCAGGAGGATGCAGTTAGGATACTCT
TGGGTCTGCGTGAGAAATATGAGGCCCATCACAACTGCAAATTCACGCTA
GAAGCAATAAATGCTGCTGTGCACCTGTCAGCAAGGTCCAGGGAAGTAGG
CTGAAATATGATGATGTTGTTGCCAGCATGGGTGATACTAGTGAAATTGT
TGTAGAATCCTCTTTGCCTTCTGCTTCAGATGATGATGAACCTGCAGTCG
TGGGACCTGATGATATTGCAGCAGTTGCTTCACTTTGGTCTGGGATCCCA
GTTCAGCAGATCACTGCCGATGAAAGAATGCTGCTAGTGGGTCTCGAAGA
GCAGCTTANAAAGCGAGTTATTGGTCAAGATGAGGCTGTTGCCGCCATTT
CTCGAGCTGTTAAGAGATCCCGGGTTGGCCTGAAGGATCCTACAGGCCAC
AGCTGCATGC
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