CX295702

Overview
NameCX295702
Unique NameCX295702
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_CHLMU (Chaperone protein clpB OS=Chlamydia muridarum GN=clpB PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.329e-27
Identity = 67/129 (51.94%), Postives = 87/129 (67.44%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+ +++  ++ S G  ILFIDEVHTL+G+G          +D +NLLKP+L RG L CI +TT +E++   EKD AL RRFQP+ ++EPS EDAV IL GLREKYE  H  + T  A+NAAV LS R
Sbjct:  255 EERLKSVLKGVEASEGACILFIDEVHTLVGAGATDGA-----MDAANLLKPALARGTLHCIGATTLNEYQKYIEKDAALERRFQPIFVTEPSLEDAVFILRGLREKYEIFHGVRITEGALNAAVVLSYR 378          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_YERPE (Chaperone protein clpB OS=Yersinia pestis GN=clpB PE=3 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.736e-27
Identity = 65/130 (50.00%), Postives = 89/130 (68.46%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTG-LDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  +++++ K  G VILFIDE+HT++G+G      KG G +D  N+LKP+L RGEL C+ +TT DE+R   EKD AL RRFQ V ++EP+ ED + IL GL+E+YE HH+ + T  AI AA  LS R
Sbjct:  256 EERLKGVLNDLSKQEGSVILFIDELHTMVGAG------KGDGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVYVAEPTVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHR 379          

HSP 2 Score: 67.3958 bits (163), Expect = 8.658e-11
Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = 2
Query:  512 DIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDP 691
            ++A V + W+GIPV ++   ER  L+ +E+ L +RVIGQDEAV A+S A++RSR GL DP
Sbjct:  535 EVAEVLARWTGIPVSRMLKSERDKLLRMEQDLHQRVIGQDEAVEAVSNAIRRSRAGLSDP 594          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_PORGI (Chaperone protein clpB OS=Porphyromonas gingivalis GN=clpB PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.736e-27
Identity = 65/130 (50.00%), Postives = 91/130 (70.00%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTG-LDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  +++E+  + G++ILFIDE+HTL+G+G      K  G +D +N+LKP+L RGEL+ I +TT DE+R  FEKDKAL RRFQ V++ EP +  ++ IL GL+EKYE HH  +   +AI AAV LS R
Sbjct:  254 EERLKAVVNEVTGAEGEIILFIDEIHTLVGAG------KSEGAMDAANILKPALARGELRAIGATTLDEYRKYFEKDKALERRFQMVMVDEPDELSSISILRGLKEKYENHHKVRIKDDAIIAAVKLSHR 377          

HSP 2 Score: 74.3294 bits (181), Expect = 7.082e-13
Identity = 36/64 (56.25%), Postives = 48/64 (75.00%), Query Frame = 2
Query:  500 VGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDP 691
            V  DDIA + S W+GIPV ++   ER  L+ LE++L KRVIGQDEA+ A++ AV+RSR GL+DP
Sbjct:  529 VEADDIADIVSRWTGIPVSRMLQSERDKLLHLEDELHKRVIGQDEAIRAVADAVRRSRAGLQDP 592          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPC_PORYE (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra yezoensis GN=clpC PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.268e-27
Identity = 62/122 (50.82%), Postives = 83/122 (68.03%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAA 368
            E R+  ++ EI+ + +VIL IDEVHTLIG+G          +D +NLLKP+L RGELQCI +TT +E+R   EKD AL RRFQPV++ EPS E+ + IL GLR++YE HH    +  A+ AA
Sbjct:  260 EERLKRIMDEIKSADNVILVIDEVHTLIGAGAAEGA-----IDAANLLKPALARGELQCIGATTLEEYRKHIEKDPALERRFQPVVVGEPSVEETIEILFGLRDRYEKHHQLTMSDGALAAA 376          

HSP 2 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 43/102 (42.16%), Postives = 61/102 (59.80%), Query Frame = 2
Query:  404 KYDDVVASMGDTSEIVVESSLPSASDDDEP------AVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDP 691
            KY+          EI  + +  + S  +EP       VV  DDIA + + W+GIPV ++T  E   L+ +EE L  R+IGQDEAV A+SRA++R+RVGLK+P
Sbjct:  437 KYETAEQYRAREMEIKAQIAAIAQSKKNEPDLNLEDPVVTEDDIAEIVAAWTGIPVTKLTKSESEKLMHMEETLHGRIIGQDEAVVAVSRAIRRARVGLKNP 538          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPC_MYCLE (Probable ATP-dependent Clp protease ATP-binding subunit OS=Mycobacterium leprae GN=clpC PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.268e-27
Identity = 63/128 (49.22%), Postives = 83/128 (64.84%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ EI   GD+ILFIDE+HTL+G+G          +D +++LKP L RGELQ I +TT DE+R   EKD AL RRFQPV + EP+ E  + IL GLR++YEAHH    T  A+ AA  L+ R
Sbjct:  266 EERLKKVLKEINTRGDIILFIDELHTLVGAGAAEGA-----IDAASILKPKLARGELQTIGATTLDEYRKYIEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDSAMVAAATLADR 388          

HSP 2 Score: 71.2478 bits (173), Expect = 5.996e-12
Identity = 35/73 (47.95%), Postives = 51/73 (69.86%), Query Frame = 2
Query:  473 ASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDP 691
            + D D  A V  + IA V   W+GIPV ++T  E   L+ +EE+L KR+IGQ++AV A+S+A++R+R GLKDP
Sbjct:  470 SGDLDVIAEVDDEQIAEVLGNWTGIPVFKLTEAETTRLLRMEEELHKRIIGQEDAVKAVSKAIRRTRAGLKDP 542          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_PLEBO (Chaperone protein clpB OS=Plectonema boryanum GN=clpB PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.268e-27
Identity = 63/129 (48.84%), Postives = 84/129 (65.12%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ E+  S G++ILFIDE+HT++G+G          +D  NLLKP L RGEL+CI +TT DE+R   EKD AL RRFQ V + +PS ED + IL GL+E+YE HH  K +  A+ AA  LS R
Sbjct:  259 EERLKAVLKEVTDSRGNIILFIDEIHTVVGAGATQGA-----MDAGNLLKPMLARGELRCIGATTLDEYRKYIEKDAALERRFQQVFVDQPSVEDTISILRGLKERYEVHHGVKISDSALVAAATLSTR 382          

HSP 2 Score: 67.781 bits (164), Expect = 6.629e-11
Identity = 32/60 (53.33%), Postives = 43/60 (71.67%), Query Frame = 2
Query:  512 DIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDP 691
            DIA + S W+GIPV ++   E   L+ L++ L +RVIGQDEAV A+S A++RSR GL DP
Sbjct:  542 DIAEIISKWTGIPVSKLVESEMQKLLQLDDVLHQRVIGQDEAVTAVSDAIQRSRAGLSDP 601          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_CLOTE (Chaperone protein clpB OS=Clostridium tetani GN=clpB PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.268e-27
Identity = 63/129 (48.84%), Postives = 87/129 (67.44%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ E++ S G +ILFIDE+H ++G+G      +G+ +D  NL+KP L RGEL CI +TT DE+R   EKDKAL RRFQPV+I EP+ ED + I+ GL+E++E HH  +    AI AA  LS R
Sbjct:  260 EERLKAVLKEVENSQGKIILFIDEIHNIVGAGKT----EGS-MDAGNLIKPMLARGELNCIGATTFDEYRKYIEKDKALERRFQPVIIDEPTVEDTISIIRGLKERFEIHHGIRIHDSAIVAAAKLSQR 383          

HSP 2 Score: 67.3958 bits (163), Expect = 8.658e-11
Identity = 39/101 (38.61%), Postives = 62/101 (61.39%), Query Frame = 2
Query:  395 SRLKYDDV--VASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDP 691
            + LKY  +  + S  +  EI+++ +       +E   V  ++I+ + S W+GIPV ++   E+  L+ LE++L  RVIGQDEAV A+S AV R+R G+KDP
Sbjct:  503 AELKYGIIPGIKSQIEEKEILIKENSQGNMLKEE---VTENEISKIISHWTGIPVTKLIEGEKDKLLRLEDELKSRVIGQDEAVEAVSNAVLRARAGMKDP 600          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB1_THEEB (Chaperone protein clpB 1 OS=Thermosynechococcus elongatus (strain BP-1) GN=clpB1 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.268e-27
Identity = 64/129 (49.61%), Postives = 84/129 (65.12%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ E+  S G +ILFIDE+HT++G+G          +D  NLLKP L RGEL+CI +TT DE+R   EKD AL RRFQ V + +PS ED + IL GL+E+YE HH  K +  A+ AA  LSAR
Sbjct:  257 EERLKAVLKEVTDSNGQIILFIDEIHTVVGAGATQGA-----MDAGNLLKPMLARGELRCIGATTLDEYRKYIEKDAALERRFQQVYVDQPSVEDTISILRGLKERYEIHHGVKISDTALVAAATLSAR 380          

HSP 2 Score: 72.4034 bits (176), Expect = 2.691e-12
Identity = 33/60 (55.00%), Postives = 45/60 (75.00%), Query Frame = 2
Query:  512 DIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDP 691
            DIA + S W+GIPV ++   E   L+ LEE+L KRV+GQDEAV+A++ A++RSR GL DP
Sbjct:  540 DIAEIISKWTGIPVSKLVESEAQKLLHLEEELHKRVVGQDEAVSAVAEAIQRSRAGLADP 599          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPC_MYCTU (Probable ATP-dependent Clp protease ATP-binding subunit OS=Mycobacterium tuberculosis GN=clpC PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.962e-27
Identity = 63/128 (49.22%), Postives = 83/128 (64.84%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ EI   GD+ILFIDE+HTL+G+G          +D +++LKP L RGELQ I +TT DE+R   EKD AL RRFQPV + EP+ E  + IL GLR++YEAHH    T  A+ AA  L+ R
Sbjct:  266 EERLKKVLKEINTRGDIILFIDELHTLVGAGAAEGA-----IDAASILKPKLARGELQTIGATTLDEYRKYIEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDAAMVAAATLADR 388          

HSP 2 Score: 71.633 bits (174), Expect = 4.591e-12
Identity = 35/73 (47.95%), Postives = 51/73 (69.86%), Query Frame = 2
Query:  473 ASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDP 691
            + D D  A V  + IA V   W+GIPV ++T  E   L+ +EE+L KR+IGQ++AV A+S+A++R+R GLKDP
Sbjct:  470 SGDLDVVAEVDDEQIAEVLGNWTGIPVFKLTEAETTRLLRMEEELHKRIIGQEDAVKAVSKAIRRTRAGLKDP 542          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPC_MYCBO (Probable ATP-dependent Clp protease ATP-binding subunit OS=Mycobacterium bovis GN=clpC PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.962e-27
Identity = 63/128 (49.22%), Postives = 83/128 (64.84%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ EI   GD+ILFIDE+HTL+G+G          +D +++LKP L RGELQ I +TT DE+R   EKD AL RRFQPV + EP+ E  + IL GLR++YEAHH    T  A+ AA  L+ R
Sbjct:  266 EERLKKVLKEINTRGDIILFIDELHTLVGAGAAEGA-----IDAASILKPKLARGELQTIGATTLDEYRKYIEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDAAMVAAATLADR 388          

HSP 2 Score: 71.633 bits (174), Expect = 4.591e-12
Identity = 35/73 (47.95%), Postives = 51/73 (69.86%), Query Frame = 2
Query:  473 ASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDP 691
            + D D  A V  + IA V   W+GIPV ++T  E   L+ +EE+L KR+IGQ++AV A+S+A++R+R GLKDP
Sbjct:  470 SGDLDVVAEVDDEQIAEVLGNWTGIPVFKLTEAETTRLLRMEEELHKRIIGQEDAVKAVSKAIRRTRAGLKDP 542          
The following BLAST results are available for this feature:
BLAST of CX295702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
CLPB_CHLMU1.329e-2751.94Chaperone protein clpB OS=Chlamydia muridarum GN=c... [more]
CLPB_YERPE1.736e-2750.00Chaperone protein clpB OS=Yersinia pestis GN=clpB ... [more]
CLPB_PORGI1.736e-2750.00Chaperone protein clpB OS=Porphyromonas gingivalis... [more]
CLPC_PORYE2.268e-2750.82ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_MYCLE2.268e-2749.22Probable ATP-dependent Clp protease ATP-binding su... [more]
CLPB_PLEBO2.268e-2748.84Chaperone protein clpB OS=Plectonema boryanum GN=c... [more]
CLPB_CLOTE2.268e-2748.84Chaperone protein clpB OS=Clostridium tetani GN=cl... [more]
CLPB1_THEEB2.268e-2749.61Chaperone protein clpB 1 OS=Thermosynechococcus el... [more]
CLPC_MYCTU2.962e-2749.22Probable ATP-dependent Clp protease ATP-binding su... [more]
CLPC_MYCBO2.962e-2749.22Probable ATP-dependent Clp protease ATP-binding su... [more]

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Properties
Property NameValue
Genbank descriptionC05075A04SK DroRLeaf1 Citrus clementina cDNA clone C05075A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295702 ID=CX295702; Name=CX295702; organism=Citrus clementina; type=EST; length=710bp
TAGAGGCTCGTGTTACTACCTTAATAAGTGAGATACAGAAATCAGGTGAT
GTCATTCTTTTCATTGATGAAGTTCACACACTTATTGGTTCGGGCACAGT
GGGACGAGGAAACAAGGGTACTGGTCTTGACATTTCCAATCTATTGAAGC
CATCACTTGGGAGGGGTGAACTTCAGTGTATTGCATCCACAACTCAAGAT
GAACACAGGACCCAATTTGAGAAGGACAAAGCATTAGCCCGGAGATTCCA
GCCTGTATTGATTAGTGAACCAAGCCAGGAGGATGCAGTTAGGATACTCT
TGGGTCTGCGTGAGAAATATGAGGCCCATCACAACTGCAAATTCACGCTA
GAAGCAATAAATGCTGCTGTGCACCTGTCAGCAAGGTCCAGGGAAGTAGG
CTGAAATATGATGATGTTGTTGCCAGCATGGGTGATACTAGTGAAATTGT
TGTAGAATCCTCTTTGCCTTCTGCTTCAGATGATGATGAACCTGCAGTCG
TGGGACCTGATGATATTGCAGCAGTTGCTTCACTTTGGTCTGGGATCCCA
GTTCAGCAGATCACTGCCGATGAAAGAATGCTGCTAGTGGGTCTCGAAGA
GCAGCTTANAAAGCGAGTTATTGGTCAAGATGAGGCTGTTGCCGCCATTT
CTCGAGCTGTTAAGAGATCCCGGGTTGGCCTGAAGGATCCTACAGGCCAC
AGCTGCATGC
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