CX295728

Overview
NameCX295728
Unique NameCX295728
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_HAEIE (Triosephosphate isomerase OS=Haemophilus influenzae (strain PittEE) GN=tpiA PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.173e-39
Identity = 93/190 (48.95%), Postives = 119/190 (62.63%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 662
            + AQN  +   GAFTG+IS EML +    ++I+GHSERR    ES+EFV  K       GL  + C+GE+  + EAG T +V A Q  A+ +   V +++  V+AYEP+WAIGTGK ATP QAQ VH  +R  + A  S  +A    I YGGSVN AN  EL  QPD+DG LVGGASLK P F  I+K+A
Sbjct:   70 LGAQNVDINVKGAFTGDISTEMLKDFGAKYIIIGHSERRTYHKESDEFVAKKFGALKEAGLVPVLCIGESEAENEAGKTEEVCARQIDAVINALGVEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHAFIRGHIAAK-SQAVAEQVIIQYGGSVNDANAAELFTQPDIDGALVGGASLKAPAFAVIVKAA 258          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_ALKOO (Triosephosphate isomerase OS=Alkaliphilus oremlandii (strain OhILAs) GN=tpiA PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.173e-39
Identity = 90/196 (45.92%), Postives = 124/196 (63.27%), Query Frame = 3
Query:   75 KSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDII 653
            K+ +  +  + AQN   ++ GA+TGEISA ML ++ + +VILGHSERR   NE++E V  KV  A+ + LK I C+GE+LE+REA  T DV+  Q     + V   +  N+VLAYEP+WAIGTGK A+  +AQ V   +R  +      +I+   RI YGGSV  +N  E+  + D+DG LVGGASLK  EF+ II
Sbjct:   51 KALVGTNLKLGAQNMHWEEDGAYTGEISANMLKDIGVEYVILGHSERRQYFNETDETVNKKVKKAIKENLKPIVCIGESLEEREANQTFDVIKKQLLGAFEGVPAEAMDNVVLAYEPIWAIGTGKTASSEEAQTVIAYIRSLIEEKYGVDISEEVRIQYGGSVKASNATEIMNETDIDGALVGGASLKAEEFLGII 246          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_ROSS1 (Triosephosphate isomerase OS=Roseiflexus sp. (strain RS-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.532e-39
Identity = 90/187 (48.13%), Postives = 119/187 (63.64%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDII 653
            + AQ+ +++  GAFTG IS  ML +L   +VI+GHSERR I  E +E +G KV  AL+  L  I CVGET  QR+AG    +V AQ +A    ++    + IV+AYEPVWAIGTG  ATP  AQ +H  +R+ L      ++A A  I+YGGSV   N  +L AQPD+DG LVGGASLK + F+ I+
Sbjct:   61 LGAQDVYIEPQGAFTGAISPVMLRDLGCTYVIVGHSERRAIFGEGDELIGKKVRAALAHDLTPILCVGETKPQRDAGEAETIVVAQVRAALAGMTPDQIARIVIAYEPVWAIGTGDTATPADAQAMHVTIRQTLGELAGSDVADAINILYGGSVKPDNIDDLMAQPDIDGALVGGASLKADSFLRIV 247          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_PSEAE (Triosephosphate isomerase OS=Pseudomonas aeruginosa GN=tpiA PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.532e-39
Identity = 96/191 (50.26%), Postives = 123/191 (64.40%), Query Frame = 3
Query:  102 VAAQNCWVKK-GGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 662
            V AQN  V+   GA TGE +   L ++    V++GHSERRLIL ES+E V  K A A S GL  + CVGET  +REAG T++VVA Q  ++ D   V +++  V+AYEPVWAIGTG  A+P QAQEVH  +R  L A  + E+A   R++YGGSV  A+  EL   PD+DG LVGGASL   EF  I ++A
Sbjct:   60 VGAQNSAVEPMQGALTGETAPSQLADVGCSMVLVGHSERRLILGESDEVVSRKFAAAQSCGLVPVLCVGETRAEREAGKTLEVVARQLGSVIDELGVGAFARAVVAYEPVWAIGTGLTASPAQAQEVHAAIRAQLAAENA-EVAKGVRLLYGGSVKAASAAELFGMPDIDGGLVGGASLNADEFGAICRAA 249          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_PSEAB (Triosephosphate isomerase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=tpiA PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.532e-39
Identity = 96/191 (50.26%), Postives = 123/191 (64.40%), Query Frame = 3
Query:  102 VAAQNCWVKK-GGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 662
            V AQN  V+   GA TGE +   L ++    V++GHSERRLIL ES+E V  K A A S GL  + CVGET  +REAG T++VVA Q  ++ D   V +++  V+AYEPVWAIGTG  A+P QAQEVH  +R  L A  + E+A   R++YGGSV  A+  EL   PD+DG LVGGASL   EF  I ++A
Sbjct:   60 VGAQNSAVEPMQGALTGETAPSQLADVGCSMVLVGHSERRLILGESDEVVSRKFAAAQSCGLVPVLCVGETRAEREAGKTLEVVARQLGSVIDELGVGAFARAVVAYEPVWAIGTGLTASPAQAQEVHAAIRAQLAAENA-EVAKGVRLLYGGSVKAASAAELFGMPDIDGGLVGGASLNADEFGAICRAA 249          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_PSEA8 (Triosephosphate isomerase OS=Pseudomonas aeruginosa (strain LESB58) GN=tpiA PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.532e-39
Identity = 96/191 (50.26%), Postives = 123/191 (64.40%), Query Frame = 3
Query:  102 VAAQNCWVKK-GGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 662
            V AQN  V+   GA TGE +   L ++    V++GHSERRLIL ES+E V  K A A S GL  + CVGET  +REAG T++VVA Q  ++ D   V +++  V+AYEPVWAIGTG  A+P QAQEVH  +R  L A  + E+A   R++YGGSV  A+  EL   PD+DG LVGGASL   EF  I ++A
Sbjct:   60 VGAQNSAVEPMQGALTGETAPSQLADVGCSMVLVGHSERRLILGESDEVVSRKFAAAQSCGLVPVLCVGETRAEREAGKTLEVVARQLGSVIDELGVGAFARAVVAYEPVWAIGTGLTASPAQAQEVHAAIRAQLAAENA-EVAKGVRLLYGGSVKAASAAELFGMPDIDGGLVGGASLNADEFGAICRAA 249          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_MYXXD (Triosephosphate isomerase OS=Myxococcus xanthus (strain DK 1622) GN=tpiA PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.532e-39
Identity = 94/190 (49.47%), Postives = 117/190 (61.58%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSW--SNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDIIKSA 662
            +AAQNC  +  GAFTGEISA ML  L   +VI+GHSERR +  +++E V  +     + G+  I CVGETL +REA  T+ VV  Q +   +   +   +  VLAYEPVWAIGTG+ AT  QAQEVH  +R  +      E A   RI YGGSV   N  EL  QPDVDG LVGGASLK  +F  I+K+A
Sbjct:   66 LAAQNCHWESSGAFTGEISAPMLAELGCAYVIVGHSERRQLFGDTDEQVNKRAKAVRAAGMTPIICVGETLAEREANQTLAVVERQVRGALEGFGAKEVAGFVLAYEPVWAIGTGRNATAAQAQEVHAAIRGLVERLYDGETAGRVRIQYGGSVKPDNAAELLGQPDVDGALVGGASLKAGDFAAIVKAA 255          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_LACPL (Triosephosphate isomerase OS=Lactobacillus plantarum GN=tpiA PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.532e-39
Identity = 91/201 (45.27%), Postives = 128/201 (63.68%), Query Frame = 3
Query:   69 LVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI-----ADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDII 653
            +V+++   D  +AA+N + +  GAFTGE S   L +L + +V++GHSERR   +E++E +  K       G+K I C GE+LEQREAG     V+ Q KA      AD+VSS   +V+AYEP+WAIGTGK AT  QA+E+   +RK +    S E+A   RI YGGSV  AN  EL  + D+DG LVGGASL+P+ F++++
Sbjct:   50 MVEAAKGSDLKIAAENAYFEDAGAFTGETSPAALADLGVDYVVIGHSERRGYFHETDEDINKKAHAIFKNGMKPIICCGESLEQREAGEAESWVSGQIKAALKDLSADQVSS---LVIAYEPIWAIGTGKTATSDQAEEICAVVRKTVADLYSQEVADKVRIQYGGSVKPANVNELMGKDDIDGGLVGGASLQPDSFLELV 247          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_CHLTA (Triosephosphate isomerase OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=tpiA PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.532e-39
Identity = 85/190 (44.74%), Postives = 122/190 (64.21%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAEL 668
            + AQ       GAFTGEISA ML ++ + +V++GHSERR I +E N  + +K A A+  G+  + C+GETLE++E+G+T D++  Q      ++   ++ +LAYEPVWAIGTGKVA P   QE H   RK + +  S +IA  T I+YGGSV   + + L+  PDV+G LVGGASL  E F+ II+  ++
Sbjct:   84 LGAQTTHEADSGAFTGEISAPMLKDIGVDFVLIGHSERRHIFHEQNPVLAEKAAAAIHSGMIPVLCIGETLEEQESGATQDILLNQLTIGLSKLPEQASFILAYEPVWAIGTGKVAHPDLVQETHAFCRKTIASLFSKDIAERTPILYGGSVKADDARSLSLCPDVNGLLVGGASLSSENFLSIIQQVDI 273          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_AZOPC (Triosephosphate isomerase OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=tpiA PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.532e-39
Identity = 91/189 (48.15%), Postives = 120/189 (63.49%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKS 659
            + AQN   +  GA+TGE+SA M+ ++ + +VILGHSERR    E+N  + +KV  AL   L  I C+GE L++R AG    VV  Q +      S+  +  I+LAYEPVWAIGTG+ ATPVQ QE+H  +R+ L  N    IA  T I+YGGS N  N KEL   PDVDG L+GGASLK + F+ II++
Sbjct:   62 LGAQNNADRVSGAYTGEVSAAMIASIGVQYVILGHSERRAYYGETNIILKEKVKMALENNLIPIFCIGEVLKERVAGKQNIVVRKQIEESLFDFSAEDFRKIILAYEPVWAIGTGRTATPVQVQEMHIFIRQILIDNYGQAIANETSILYGGSCNAGNAKELFINPDVDGGLIGGASLKVDTFLSIIEA 250          
The following BLAST results are available for this feature:
BLAST of CX295728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_HAEIE1.173e-3948.95Triosephosphate isomerase OS=Haemophilus influenza... [more]
TPIS_ALKOO1.173e-3945.92Triosephosphate isomerase OS=Alkaliphilus oremland... [more]
TPIS_ROSS11.532e-3948.13Triosephosphate isomerase OS=Roseiflexus sp. (stra... [more]
TPIS_PSEAE1.532e-3950.26Triosephosphate isomerase OS=Pseudomonas aeruginos... [more]
TPIS_PSEAB1.532e-3950.26Triosephosphate isomerase OS=Pseudomonas aeruginos... [more]
TPIS_PSEA81.532e-3950.26Triosephosphate isomerase OS=Pseudomonas aeruginos... [more]
TPIS_MYXXD1.532e-3949.47Triosephosphate isomerase OS=Myxococcus xanthus (s... [more]
TPIS_LACPL1.532e-3945.27Triosephosphate isomerase OS=Lactobacillus plantar... [more]
TPIS_CHLTA1.532e-3944.74Triosephosphate isomerase OS=Chlamydia trachomatis... [more]
TPIS_AZOPC1.532e-3948.15Triosephosphate isomerase OS=Azobacteroides pseudo... [more]

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Properties
Property NameValue
Genbank descriptionC05075C06SK DroRLeaf1 Citrus clementina cDNA clone C05075C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295728 ID=CX295728; Name=CX295728; organism=Citrus clementina; type=EST; length=720bp
CTGAAGGTCAAGTTCCATCTTCTGATGTCGTTGAGGTCGTTGTTAGCCCT
CCGTTTGTGTTTCTTGGACTGGTGAAGAGTTCGTTGAGGCCTGATTTTCA
TGTTGCGGCACAGAATTGCTGGGTCAAGAAGGGAGGTGCTTTCACCGGTG
AGATTAGTGCGGAAATGCTCGTCAATTTGGATATTCCTTGGGTCATTCTT
GGTCATTCTGAAAGGAGACTCATTTTGAATGAATCAAATGAGTTTGTTGG
GGATAAGGTTGCATATGCACTTTCTCAAGGTTTGAAGGTGATTGCTTGTG
TTGGTGAGACACTTGAGCAGCGTGAAGCAGGATCTACTATGGATGTTGTT
GCTGCACAAACTAAAGCAATCGCAGATCGAGTCTCAAGCTGGTCAAACAT
TGTTTTGGCCTATGAACCTGTGTGGGCTATTGGAACTGGGAAGGTTGCCA
CTCCAGTGCAGGCTCAAGAAGTACATTTTGAACTGAGGAAATGGCTTTTT
GCAAACACCAGTCCTGAAATTGCTGCAGCAACACGGATCATCTACGGAGG
ATCCGTAAATGGTGCAAACTGCAAGGAATTGGCTGCACAGCCTGATGTTG
ACGGATTTTTGGTTGGTGGTGCTTCGTTGAAGCCGGAGTTCATTGACATC
ATCAAATCTGCTGAGCTGAAGTAAATTCTTGAGCTTTATTTCAGGGCAGT
TTGCTGATGAGTATTACTGT
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