CX295728

Overview
NameCX295728
Unique NameCX295728
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_LEPBL (Triosephosphate isomerase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=tpiA PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.001e-39
Identity = 93/194 (47.94%), Postives = 122/194 (62.89%), Query Frame = 3
Query:   66 GLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRK---WLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 632
            G+ K     +  V AQN +     AFTGE S E L  L +  V++GHSERR  L E+N F  +K+ + L     V+ CVGETL +RE+G T +V+++Q +     +   S+SN++LAYEPVWAIGTGKVATP QAQEVHF +RK    LF   + EIA +  I+YGGSV   N + L  + D+DG LVGGAS K
Sbjct:   50 GVAKILQGTEILVGAQNVYPSGLAAFTGETSPEQLKELGVKVVMIGHSERRQFLGETNSFCNEKIHFLLKNDFIVLYCVGETLMERESGKTFEVISSQIREGLKGIHSHSFSNLILAYEPVWAIGTGKVATPAQAQEVHFFIRKEIAGLFLG-AKEIAESISILYGGSVKPDNIQTLLKEKDLDGGLVGGASQK 242          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_LEPBJ (Triosephosphate isomerase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=tpiA PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.001e-39
Identity = 93/194 (47.94%), Postives = 122/194 (62.89%), Query Frame = 3
Query:   66 GLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRK---WLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 632
            G+ K     +  V AQN +     AFTGE S E L  L +  V++GHSERR  L E+N F  +K+ + L     V+ CVGETL +RE+G T +V+++Q +     +   S+SN++LAYEPVWAIGTGKVATP QAQEVHF +RK    LF   + EIA +  I+YGGSV   N + L  + D+DG LVGGAS K
Sbjct:   50 GVAKILQGTEILVGAQNVYPSGLAAFTGETSPEQLKELGVKVVMIGHSERRQFLGETNSFCNEKIHFLLKNDFIVLYCVGETLMERESGKTFEVISSQIREGLKGIHSHSFSNLILAYEPVWAIGTGKVATPAQAQEVHFFIRKEIAGLFLG-AKEIAESISILYGGSVKPDNIQTLLKEKDLDGGLVGGASQK 242          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_HAEDU (Triosephosphate isomerase OS=Haemophilus ducreyi GN=tpiA PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.001e-39
Identity = 92/191 (48.17%), Postives = 120/191 (62.83%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSAE 665
            + AQN  +   GAFTG+IS  ML      ++I+GHSERR    ES++F+  K A   + GL  + C+GET  + EAG T  V A Q  AI +   V +++  V+AYEP+WAIGTGK ATP QAQ VH  +R+ + A  S  +A    I YGGSVN  N  EL +QPD+DG LVGGASLK   F +I+K+AE
Sbjct:   63 LGAQNVDINTQGAFTGDISTAMLQEFCAKYIIIGHSERRTYHAESDQFIAKKFAALKTAGLTPVLCIGETEAENEAGQTQQVCARQIDAIINSLGVEAFNQAVIAYEPIWAIGTGKSATPAQAQAVHAFIRQHI-AEKSQAVADQLIIQYGGSVNDTNAAELFSQPDIDGALVGGASLKATAFAEIVKAAE 252          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_CORGL (Triosephosphate isomerase OS=Corynebacterium glutamicum GN=tpiA PE=1 SV=3)

HSP 1 Score: 162.54 bits (410), Expect = 2.001e-39
Identity = 91/179 (50.84%), Postives = 114/179 (63.69%), Query Frame = 3
Query:  108 AQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQT-KAIADR-VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 638
            AQ+    + GA+TGE+SA ML  L+  WV++GHSERR   NES+E V  K   ALS G+  I CVGE LE REAG+ ++ V  QT K++A    +  +N V+AYEPVWAIGTGKVA+   AQEV   +R  +      E+A   RI+YGGSV      E+  QPDVDG LVGGASL  E
Sbjct:   68 AQDVSQHESGAYTGEVSASMLAKLNCSWVVVGHSERREYHNESDELVAAKAKAALSNGISPIVCVGEPLEIREAGTHVEYVVEQTRKSLAGLDAAELANTVIAYEPVWAIGTGKVASAADAQEVCKAIRGLIVELAGDEVAEGLRILYGGSVKAETVAEIVGQPDVDGGLVGGASLDGE 246          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_CORGB (Triosephosphate isomerase OS=Corynebacterium glutamicum (strain R) GN=tpiA PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.001e-39
Identity = 91/179 (50.84%), Postives = 114/179 (63.69%), Query Frame = 3
Query:  108 AQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQT-KAIADR-VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 638
            AQ+    + GA+TGE+SA ML  L+  WV++GHSERR   NES+E V  K   ALS G+  I CVGE LE REAG+ ++ V  QT K++A    +  +N V+AYEPVWAIGTGKVA+   AQEV   +R  +      E+A   RI+YGGSV      E+  QPDVDG LVGGASL  E
Sbjct:   68 AQDVSQHESGAYTGEVSASMLAKLNCSWVVVGHSERREYHNESDELVAAKAKAALSNGISPIVCVGEPLEIREAGTHVEYVVEQTRKSLAGLDATELANTVIAYEPVWAIGTGKVASAADAQEVCKAIRGLIVELAGDEVAEGLRILYGGSVKAETVAEIVGQPDVDGGLVGGASLDGE 246          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_PHOLL (Triosephosphate isomerase OS=Photorhabdus luminescens subsp. laumondii GN=tpiA PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.614e-39
Identity = 94/190 (49.47%), Postives = 119/190 (62.63%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 662
            + AQ+  V   GAFTGE SA ML ++   ++I+GHSERR    ES+EF+  K A    QGL  + C+GET ++ EAG T  V A Q  A+ +   V+++   V+AYEPVWAIGTGK ATP QAQ VH  +R  + A     IA    I YGGSVN  N  EL +QPD+DG LVGGASLK   F  I+K+A
Sbjct:   61 LGAQDVDVNLSGAFTGETSATMLKDIGAEYIIIGHSERRTYHQESDEFIAKKFAILKQQGLIPVLCIGETEQENEAGQTESVCARQIDAVLNTLGVAAFQGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AQKDAAIAQQIIIQYGGSVNADNAAELFSQPDIDGALVGGASLKANAFAVIVKAA 249          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_PASMU (Triosephosphate isomerase OS=Pasteurella multocida GN=tpiA PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.614e-39
Identity = 92/190 (48.42%), Postives = 119/190 (62.63%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 662
            + AQN  V   GAFTG+IS EML +    ++I+GHSERR    ES+EF+  K A     GL  + C+GE+  + EAG T +V A Q  A+ + +   +++  V+AYEP+WAIGTGK ATP QAQ VH  +R  + A     +A    I YGGSVN AN  EL  QPD+DG LVGGASLK P F  I+K+A
Sbjct:   68 LGAQNVDVNVQGAFTGDISTEMLKDFGAKYIIIGHSERRTYHKESDEFIAKKFAALKQAGLVPVLCIGESEAENEAGKTEEVCARQIDAVLNTLGAEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHAFIRGHI-AKKDNAVAEQVIIQYGGSVNDANAAELFTQPDIDGALVGGASLKAPAFAVIVKAA 256          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_LACAC (Triosephosphate isomerase OS=Lactobacillus acidophilus GN=tpiA PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.614e-39
Identity = 88/192 (45.83%), Postives = 125/192 (65.10%), Query Frame = 3
Query:   69 LVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSW--SNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 638
            L K++   + H+ A+NC+ +  GA+TGE S ++L  + I +VI+GHSERR   +E++E +  K     + G+K I C GE+LE REA    D V AQ KA  D +++   S++V+AYEP+WAIGTGK A+  QA+E+   +R+ +    + E A   RI YGGSV  AN KEL ++PD+DG LVGGASL PE
Sbjct:   51 LRKAAEGSNLHIGAENCYFEDEGAYTGETSPKVLKEMGIDYVIIGHSERRGYFHETDEDINKKAKAIFANGMKPIICCGESLETREANKQEDWVVAQIKAALDGLTAEQVSSLVIAYEPIWAIGTGKTASSDQAEEMCKTIRETVKDLYNEETAENVRIQYGGSVKPANVKELMSKPDIDGGLVGGASLDPE 242          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_ERWT9 (Triosephosphate isomerase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=tpiA PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.614e-39
Identity = 92/190 (48.42%), Postives = 120/190 (63.16%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 662
            + AQN  V   GAFTGE+SA+ML ++   ++I+GHSERR    ES++ +  K A     GL  + C+GET  + EAG T +V A Q  A+ +     ++  +V+AYEPVWAIGTGK ATP QAQ VH  +R  + A     +AA   I YGGSVN  N  EL AQPD+DG LVGGASLK + F  I+K+A
Sbjct:   61 LGAQNVDVNLSGAFTGEVSADMLKDIGAQYIIIGHSERRTWHAESDDAIAKKFAVLKQTGLIPVLCIGETEAENEAGKTEEVCARQIDAVLNTQGADAFKGVVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKKDATVAAQVIIQYGGSVNDKNAAELFAQPDIDGALVGGASLKADAFAAIVKAA 249          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_CLOTH (Triosephosphate isomerase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=tpiA PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.614e-39
Identity = 93/191 (48.69%), Postives = 121/191 (63.35%), Query Frame = 3
Query:   66 GLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 632
            G+V+++   +  VAAQN   ++ GAFTGE+S  ML  L + +VI+GHSERR    E++E V  KV  A   GLK I CVGE+L QRE G T ++V  Q K     +S+      V+AYEP+WAIGTGK AT  QA+EV   +R+ +      ++A A RI YGGSVN AN  EL   P++DG LVGGASLK
Sbjct:   49 GVVEAAKGSNIKVAAQNMHWEEKGAFTGEVSGPMLAELGVDYVIIGHSERRQYFGETDETVNKKVHAAFKYGLKPIICVGESLTQREQGVTAELVRYQVKIALLGLSAEQVKEAVIAYEPIWAIGTGKTATNEQAEEVCGIIRECIKELYGQDVAEAIRIQYGGSVNAANAAELFNMPNIDGGLVGGASLK 239          
The following BLAST results are available for this feature:
BLAST of CX295728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_LEPBL2.001e-3947.94Triosephosphate isomerase OS=Leptospira borgpeters... [more]
TPIS_LEPBJ2.001e-3947.94Triosephosphate isomerase OS=Leptospira borgpeters... [more]
TPIS_HAEDU2.001e-3948.17Triosephosphate isomerase OS=Haemophilus ducreyi G... [more]
TPIS_CORGL2.001e-3950.84Triosephosphate isomerase OS=Corynebacterium gluta... [more]
TPIS_CORGB2.001e-3950.84Triosephosphate isomerase OS=Corynebacterium gluta... [more]
TPIS_PHOLL2.614e-3949.47Triosephosphate isomerase OS=Photorhabdus luminesc... [more]
TPIS_PASMU2.614e-3948.42Triosephosphate isomerase OS=Pasteurella multocida... [more]
TPIS_LACAC2.614e-3945.83Triosephosphate isomerase OS=Lactobacillus acidoph... [more]
TPIS_ERWT92.614e-3948.42Triosephosphate isomerase OS=Erwinia tasmaniensis ... [more]
TPIS_CLOTH2.614e-3948.69Triosephosphate isomerase OS=Clostridium thermocel... [more]

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Properties
Property NameValue
Genbank descriptionC05075C06SK DroRLeaf1 Citrus clementina cDNA clone C05075C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295728 ID=CX295728; Name=CX295728; organism=Citrus clementina; type=EST; length=720bp
CTGAAGGTCAAGTTCCATCTTCTGATGTCGTTGAGGTCGTTGTTAGCCCT
CCGTTTGTGTTTCTTGGACTGGTGAAGAGTTCGTTGAGGCCTGATTTTCA
TGTTGCGGCACAGAATTGCTGGGTCAAGAAGGGAGGTGCTTTCACCGGTG
AGATTAGTGCGGAAATGCTCGTCAATTTGGATATTCCTTGGGTCATTCTT
GGTCATTCTGAAAGGAGACTCATTTTGAATGAATCAAATGAGTTTGTTGG
GGATAAGGTTGCATATGCACTTTCTCAAGGTTTGAAGGTGATTGCTTGTG
TTGGTGAGACACTTGAGCAGCGTGAAGCAGGATCTACTATGGATGTTGTT
GCTGCACAAACTAAAGCAATCGCAGATCGAGTCTCAAGCTGGTCAAACAT
TGTTTTGGCCTATGAACCTGTGTGGGCTATTGGAACTGGGAAGGTTGCCA
CTCCAGTGCAGGCTCAAGAAGTACATTTTGAACTGAGGAAATGGCTTTTT
GCAAACACCAGTCCTGAAATTGCTGCAGCAACACGGATCATCTACGGAGG
ATCCGTAAATGGTGCAAACTGCAAGGAATTGGCTGCACAGCCTGATGTTG
ACGGATTTTTGGTTGGTGGTGCTTCGTTGAAGCCGGAGTTCATTGACATC
ATCAAATCTGCTGAGCTGAAGTAAATTCTTGAGCTTTATTTCAGGGCAGT
TTGCTGATGAGTATTACTGT
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