CX295728

Overview
NameCX295728
Unique NameCX295728
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_YERE8 (Triosephosphate isomerase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=tpiA PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.414e-39
Identity = 93/190 (48.95%), Postives = 117/190 (61.58%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 662
            + AQN  V   GAFTGE SAEML ++   ++I+GHSERR    ES+EF+  K       GL  + C+GET  + EAG T  V A Q  A+ + +   ++   V+AYEP+WAIGTGK ATP QAQ VH  +R  + A     IAA   I YGGSVN  N  EL  QPD+DG LVGGASLK + F  I+K+A
Sbjct:   61 LGAQNVDVNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDEFIAKKFGVLKEVGLTPVLCIGETEAENEAGQTEAVCAKQLDAVLNTLGAKAFEGAVIAYEPIWAIGTGKSATPAQAQAVHKFIRDHI-AKQDAAIAAQVIIQYGGSVNDKNAAELFTQPDIDGALVGGASLKADAFAVIVKAA 249          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_THIDA (Triosephosphate isomerase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=tpiA PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.414e-39
Identity = 96/188 (51.06%), Postives = 121/188 (64.36%), Query Frame = 3
Query:  108 AQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGAS-LKPEFIDIIKSA 662
            AQN      GAFTGE+SA ML++    +VI+GHSERR +  ES+  V  K   A + GL  I CVGE+L +RE+G T  VVA Q  A+  A  ++S +  V+AYEPVWAIGTGK A+P QAQ VH  +R  L A+    +AA   I YGGSV  AN  EL AQPD+DG L+GGAS L  EF+ I ++A
Sbjct:   60 AQNVSEHGKGAFTGEVSASMLLDFGCKYVIVGHSERRSLYGESDALVAAKYMAAQAAGLTPILCVGESLAERESGVTEQVVARQLDAVVAAAGIASLARAVVAYEPVWAIGTGKTASPEQAQAVHAFIRGKL-ADLDAAVAAGLIIQYGGSVKAANAAELMAQPDIDGGLIGGASLLADEFVAICRAA 246          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_ROSCS (Triosephosphate isomerase OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=tpiA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.458e-39
Identity = 91/187 (48.66%), Postives = 117/187 (62.57%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDII 653
            + AQ+ +++  GAFTG IS  ML +L   +VI+GHSERR I  E +E +G KV  AL+  L  I CVGET  QR+AG    VV AQ +A    ++      IV+AYEPVWAIGTG  ATP  AQ +H  +R+ L      + AA   I+YGGSV   N  +L AQPD+DG LVGGASLK + F+ I+
Sbjct:   61 LGAQDVYIEPQGAFTGAISPVMLRDLGCAYVIVGHSERRAIFGEGDELIGKKVRAALAHDLTPILCVGETKPQRDAGHAETVVVAQVRAALTGMTPEQIGRIVIAYEPVWAIGTGDTATPADAQAMHETIRRILGDMAGSDTAATINILYGGSVKPDNIDDLMAQPDIDGALVGGASLKADSFLRIV 247          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_GEOLS (Triosephosphate isomerase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=tpiA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.458e-39
Identity = 93/199 (46.73%), Postives = 125/199 (62.81%), Query Frame = 3
Query:   69 LVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKA-IAD-RVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIK 656
            + K++ +    VAAQ+C+ +  GAFTGE+S ++L +     VI+GHSERR    E++  V  K   A+  GL V+ CVGE+L QRE+  T  V+  Q +  +AD   +  + IV+AYEPVWAIGTGK A+  QAQEVH  +R  +     P  A A RI+YGGSV   N K L +QPD+DG LVGGASLK E F  I++
Sbjct:   50 VAKAAGKTGVKVAAQDCYWEDEGAFTGEVSPKLLKDAGCSHVIIGHSERRQYFGETDGTVNLKTKAAIRAGLTVLLCVGESLAQRESNDTFKVIETQVRGGLADIPAAELTQIVVAYEPVWAIGTGKTASDAQAQEVHAFIRTLVAQIYGPSEADAMRILYGGSVKPENIKGLMSQPDIDGALVGGASLKAESFAGIVR 248          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_DELAS (Triosephosphate isomerase OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.458e-39
Identity = 92/190 (48.42%), Postives = 126/190 (66.32%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSN-IVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSAE 665
            VAAQ+    + GA+TGE+SA ML +  + + ++GHSERR    E++  V  K   AL++G+  I CVGETL +REAG T +VV  Q  A+  +V    N +V+AYEPVWAIGTG+ ATP QAQ+VH  LR  L A  + + A    ++YGGS+N +N  +L AQ D+DG LVGGASLK  +F+ II +A+
Sbjct:   61 VAAQDVSQHESGAYTGELSAAMLRDFGVRYTLVGHSERRQYHGETDAVVALKAQAALAKGVTPIVCVGETLAEREAGQTEEVVKRQLAAVIHQVGQCINELVVAYEPVWAIGTGRTATPEQAQQVHAVLRAQLAA--ASQQADRIALLYGGSMNASNAAQLLAQADIDGGLVGGASLKAADFLTIIAAAQ 248          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_CORDI (Triosephosphate isomerase OS=Corynebacterium diphtheriae GN=tpiA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.458e-39
Identity = 89/179 (49.72%), Postives = 113/179 (63.13%), Query Frame = 3
Query:  108 AQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 638
            AQ+    + GA+TGEISA+ML  L   WV++GHSERR    ES+E V  K   AL+QG+  I CVGE LE REAG+ ++ V  QT+A    +++   +  V+AYEPVWAIGTGKVA+   AQEV   +R  +      E+A   RI+YGGSV      E+  QPDVDG LVGGASL  E
Sbjct:   68 AQDVSQHEAGAYTGEISAQMLAKLGCTWVVVGHSERREYHGESSELVAVKAKAALNQGISPIVCVGEPLEIREAGTHVEYVVEQTRASLAGLTADDLAKTVIAYEPVWAIGTGKVASAADAQEVCAAIRNLIIELAGKEVAEGLRILYGGSVKAETVAEIVGQPDVDGGLVGGASLDGE 246          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_LEGPA (Triosephosphate isomerase OS=Legionella pneumophila (strain Paris) GN=tpiA PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.823e-39
Identity = 90/187 (48.13%), Postives = 117/187 (62.57%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI-ADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIK 656
            V AQN + K  GA+TGE+SA ML + D  +V++GHSERR   +E   FV  K  +    G+  I CVGETL +RE G T  V+A Q  A+ A     + + V+AYEPVWAIGTGK ATP QAQ++H  +R  L    +   A    +IYGGSVN  N K L + PD+DG LVGGASL   +F++I+K
Sbjct:   61 VGAQNVYPKDYGAYTGELSAPMLKDFDCRYVLVGHSERRQFFHEDENFVAQKFHHVKDHGMIPILCVGETLSERENGKTEQVIAQQVLAVSAKGKDCFRDCVVAYEPVWAIGTGKTATPEQAQKIHQFIRD-LVGEINDSDAKHLTLIYGGSVNENNAKALFSMPDIDGGLVGGASLNAKQFVEIVK 246          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_LEGPL (Triosephosphate isomerase OS=Legionella pneumophila (strain Lens) GN=tpiA PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.605e-39
Identity = 89/187 (47.59%), Postives = 117/187 (62.57%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI-ADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIK 656
            V AQN + K  GA+TGE+SA ML + D  +V++GHSERR   +E   FV  K  +    G+  + CVGETL +RE G T  V+A Q  A+ A     + + V+AYEPVWAIGTGK ATP QAQ++H  +R  L    +   A    +IYGGSVN  N K L + PD+DG LVGGASL   +F++I+K
Sbjct:   61 VGAQNVYPKDYGAYTGELSAPMLKDFDCRYVLVGHSERRQFFHEDENFVAQKFHHVKDHGMIPVLCVGETLSERENGKTEQVIAQQVLAVSAKGKDCFRDCVVAYEPVWAIGTGKTATPEQAQKIHQFIRD-LVGEINDSDAKHLTLIYGGSVNENNAKALFSMPDIDGGLVGGASLNAKQFVEIVK 246          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_LEGPH (Triosephosphate isomerase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=tpiA PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.605e-39
Identity = 89/187 (47.59%), Postives = 117/187 (62.57%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI-ADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIK 656
            V AQN + K  GA+TGE+SA ML + D  +V++GHSERR   +E   FV  K  +    G+  + CVGETL +RE G T  V+A Q  A+ A     + + V+AYEPVWAIGTGK ATP QAQ++H  +R  L    +   A    +IYGGSVN  N K L + PD+DG LVGGASL   +F++I+K
Sbjct:   61 VGAQNVYPKDYGAYTGELSAPMLKDFDCRYVLVGHSERRQFFHEDENFVAQKFHHVKDHGMIPVLCVGETLSERENGKTEQVIAQQVLAVSAKGKDCFRDCVVAYEPVWAIGTGKTATPEQAQKIHQFIRD-LVGEINDSDAKHLTLIYGGSVNENNAKALFSMPDIDGGLVGGASLNAKQFVEIVK 246          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_LEGPC (Triosephosphate isomerase OS=Legionella pneumophila (strain Corby) GN=tpiA PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.605e-39
Identity = 89/187 (47.59%), Postives = 117/187 (62.57%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI-ADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIK 656
            V AQN + K  GA+TGE+SA ML + D  +V++GHSERR   +E   FV  K  +    G+  I CVGETL +RE G T  ++A Q  A+ A     + + V+AYEPVWAIGTGK ATP QAQ++H  +R  L    +   A    +IYGGSVN  N K L + PD+DG LVGGASL   +F++I+K
Sbjct:   61 VGAQNVYPKDYGAYTGELSAPMLKDFDCRYVLVGHSERRQFFHEDENFVAQKFHHVKDHGMIPILCVGETLSERENGKTEQIIAQQVLAVSAKGKDCFRDCVVAYEPVWAIGTGKTATPEQAQKIHQFIRD-LVGEINDSDAKHLTLIYGGSVNENNAKALFSMPDIDGGLVGGASLNAKQFVEIVK 246          
The following BLAST results are available for this feature:
BLAST of CX295728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_YERE83.414e-3948.95Triosephosphate isomerase OS=Yersinia enterocoliti... [more]
TPIS_THIDA3.414e-3951.06Triosephosphate isomerase OS=Thiobacillus denitrif... [more]
TPIS_ROSCS4.458e-3948.66Triosephosphate isomerase OS=Roseiflexus castenhol... [more]
TPIS_GEOLS4.458e-3946.73Triosephosphate isomerase OS=Geobacter lovleyi (st... [more]
TPIS_DELAS4.458e-3948.42Triosephosphate isomerase OS=Delftia acidovorans (... [more]
TPIS_CORDI4.458e-3949.72Triosephosphate isomerase OS=Corynebacterium dipht... [more]
TPIS_LEGPA5.823e-3948.13Triosephosphate isomerase OS=Legionella pneumophil... [more]
TPIS_LEGPL7.605e-3947.59Triosephosphate isomerase OS=Legionella pneumophil... [more]
TPIS_LEGPH7.605e-3947.59Triosephosphate isomerase OS=Legionella pneumophil... [more]
TPIS_LEGPC7.605e-3947.59Triosephosphate isomerase OS=Legionella pneumophil... [more]

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Properties
Property NameValue
Genbank descriptionC05075C06SK DroRLeaf1 Citrus clementina cDNA clone C05075C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295728 ID=CX295728; Name=CX295728; organism=Citrus clementina; type=EST; length=720bp
CTGAAGGTCAAGTTCCATCTTCTGATGTCGTTGAGGTCGTTGTTAGCCCT
CCGTTTGTGTTTCTTGGACTGGTGAAGAGTTCGTTGAGGCCTGATTTTCA
TGTTGCGGCACAGAATTGCTGGGTCAAGAAGGGAGGTGCTTTCACCGGTG
AGATTAGTGCGGAAATGCTCGTCAATTTGGATATTCCTTGGGTCATTCTT
GGTCATTCTGAAAGGAGACTCATTTTGAATGAATCAAATGAGTTTGTTGG
GGATAAGGTTGCATATGCACTTTCTCAAGGTTTGAAGGTGATTGCTTGTG
TTGGTGAGACACTTGAGCAGCGTGAAGCAGGATCTACTATGGATGTTGTT
GCTGCACAAACTAAAGCAATCGCAGATCGAGTCTCAAGCTGGTCAAACAT
TGTTTTGGCCTATGAACCTGTGTGGGCTATTGGAACTGGGAAGGTTGCCA
CTCCAGTGCAGGCTCAAGAAGTACATTTTGAACTGAGGAAATGGCTTTTT
GCAAACACCAGTCCTGAAATTGCTGCAGCAACACGGATCATCTACGGAGG
ATCCGTAAATGGTGCAAACTGCAAGGAATTGGCTGCACAGCCTGATGTTG
ACGGATTTTTGGTTGGTGGTGCTTCGTTGAAGCCGGAGTTCATTGACATC
ATCAAATCTGCTGAGCTGAAGTAAATTCTTGAGCTTTATTTCAGGGCAGT
TTGCTGATGAGTATTACTGT
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