CX295728

Overview
NameCX295728
Unique NameCX295728
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_SODGM (Triosephosphate isomerase OS=Sodalis glossinidius (strain morsitans) GN=tpiA PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.932e-39
Identity = 91/190 (47.89%), Postives = 119/190 (62.63%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 662
            + AQN      GA+TGE+SAEML ++   ++I+GHSERR    ES+EF+ +K A      L  + C+GE+  + EAG T  V A Q  A+ + +   ++ N V+AYEP+WAIGTGK ATP QAQ VH  +R  + A     IA    I YGGSVN AN  EL  QPD+DG LVGGASLK + F  I+K+A
Sbjct:   61 LGAQNVDTHLSGAYTGEVSAEMLKDIGAKYIIIGHSERRTYHKESDEFIAEKFAVLKEAELIPVLCIGESEAENEAGQTEAVCARQIDAVLNSLGAKAFENTVIAYEPIWAIGTGKSATPAQAQAVHKFIRDHI-AKHDAAIAEQVIIQYGGSVNAANAAELFTQPDIDGALVGGASLKADAFAVIVKAA 249          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_EXIS2 (Triosephosphate isomerase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=tpiA PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.932e-39
Identity = 91/190 (47.89%), Postives = 113/190 (59.47%), Query Frame = 3
Query:   69 LVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAD--RVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 632
            L +++   D  + AQN + ++ GAFTGEIS  ML  L + +V+LGHSERR    E++ F+  K   A   GL  I CVGETLE+RE G    V+  QT        V    N+V+AYEPVWAIGTGK AT   AQ+    +R  + A    E A A RI YGGSV   N KE  AQPD+DG LVGGASL+
Sbjct:   50 LTEATAGTDLKIGAQNMYDQESGAFTGEISPVMLKELGVTYVVLGHSERREYFGETDAFINSKTKKAFEHGLVPIVCVGETLEEREGGKFESVIREQTTNSLKGLTVDQVKNLVVAYEPVWAIGTGKSATEQDAQDSCKFVRDVIAAEFGTEAAEAVRIQYGGSVKPDNIKEYMAQPDIDGALVGGASLE 239          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_RHOFD (Triosephosphate isomerase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=tpiA PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.297e-38
Identity = 97/189 (51.32%), Postives = 121/189 (64.02%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSW-SNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 662
            + AQ+    + GAFTGEIS  ML    + + I+GHSERR    E++  V  K   AL+ G+  I CVGETL +REAG T +VV  Q  A+        S +V+AYEPVWAIGTGK A+  QAQ+VH  LR+ L A +    A   +IIYGGS+N AN  EL AQPD+DG LVGGASLK P+F+ II SA
Sbjct:   60 LGAQDLSQHEVGAFTGEISGAMLQEFGVRYCIVGHSERRQYHFETDALVAAKAQRALACGITPIVCVGETLAEREAGRTEEVVKRQLAAVIHANGHCISEVVVAYEPVWAIGTGKTASIEQAQQVHSVLRQQLQAASIQ--ADRIQIIYGGSMNAANAAELLAQPDIDGGLVGGASLKVPDFLSIIASA 246          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_PSEMY (Triosephosphate isomerase OS=Pseudomonas mendocina (strain ymp) GN=tpiA PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.297e-38
Identity = 95/191 (49.74%), Postives = 121/191 (63.35%), Query Frame = 3
Query:  102 VAAQNCWVK-KGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 662
            V AQ+C  + + GA TGE++   LV+     V++GHSERRLIL ES+E V  K A     GL  + CVGET EQREA +T+ VV  Q  A+ D   V + +N V+AYEPVWAIGTG  ATP QAQEVH  +R  + A    ++A+  RI+YGGSV  A+  EL    D+DG LVGGASL   EF  I ++A
Sbjct:   60 VGAQDCAAQVEQGALTGELAVSQLVDGGCELVLVGHSERRLILGESDEVVVSKFAAVQKAGLTPVLCVGETREQREANATLGVVGGQLAAVIDALGVQALNNAVVAYEPVWAIGTGLTATPEQAQEVHAAIRAQV-AQLDAQVASELRILYGGSVKAASAAELFGMQDIDGGLVGGASLNADEFGAICRAA 249          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_LACCB (Triosephosphate isomerase OS=Lactobacillus casei (strain BL23) GN=tpiA PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.297e-38
Identity = 91/183 (49.73%), Postives = 117/183 (63.93%), Query Frame = 3
Query:  105 AAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI-----ADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 638
            AA+NC+ +  GAFTGE S + L  +++ +VI+GHSERR   +E++E +  K        L  I C GE+L QREAG T D VA+Q +A      AD+V      VLAYEP+WAIGTGK AT  QAQEV   +R  +    + + A A RI+YGGSV  AN KEL A+PD+DG LVGGAS+ PE
Sbjct:   62 AAENCYFEDEGAFTGETSPKALKEMNVDYVIIGHSERRGYFHETDEDINKKAKAIFKNNLLPIICCGESLAQREAGQTEDWVASQIEAALAGLSADQVKV---SVLAYEPIWAIGTGKTATADQAQEVVAHIRATVEKLYNKDTADAVRILYGGSVKPANVKELMAKPDIDGGLVGGASMDPE 241          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_LACC3 (Triosephosphate isomerase OS=Lactobacillus casei (strain ATCC 334) GN=tpiA PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.297e-38
Identity = 91/183 (49.73%), Postives = 117/183 (63.93%), Query Frame = 3
Query:  105 AAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI-----ADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 638
            AA+NC+ +  GAFTGE S + L  +++ +VI+GHSERR   +E++E +  K        L  I C GE+L QREAG T D VA+Q +A      AD+V      VLAYEP+WAIGTGK AT  QAQEV   +R  +    + + A A RI+YGGSV  AN KEL A+PD+DG LVGGAS+ PE
Sbjct:   62 AAENCYFEDEGAFTGETSPKALKEMNVDYVIIGHSERRGYFHETDEDINKKAKAIFKNNLLPIICCGESLAQREAGQTEDWVASQIEAALAGLSADQVKV---SVLAYEPIWAIGTGKTATADQAQEVVAHIRATVEKLYNKDTADAVRILYGGSVKPANVKELMAKPDIDGGLVGGASMDPE 241          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_HALHL (Triosephosphate isomerase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.297e-38
Identity = 90/190 (47.37%), Postives = 118/190 (62.11%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 662
            + AQ+      GA+TGE+SA ML+     +VI+GHSERR +  E N  V  K   A + GL  I CVGETL +R+A  T  VV  Q  A+ D V  +++   V+AYEPVWAIGTG+ ATP QAQ VH  +R+ +    + EIA    I+YGGS+   N  EL AQPD+DG L+GGASL P+ F+ I  +A
Sbjct:   57 LGAQDVSEYDSGAYTGEVSASMLLEAGCRYVIVGHSERRTLYGEDNGRVAGKFVAARNAGLTPILCVGETLAERDAERTESVVGEQLDAVMDAVGGATFQGAVIAYEPVWAIGTGRTATPEQAQAVHAFIRQRVQERDAGEIADQLPILYGGSMKADNAAELLAQPDIDGGLIGGASLDPDSFLSIYNAA 246          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_BAUCH (Triosephosphate isomerase OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=tpiA PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.694e-38
Identity = 93/193 (48.19%), Postives = 122/193 (63.21%), Query Frame = 3
Query:   99 HVA--AQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 662
            H+A  AQN  +   GAFTGEISA+ML ++   ++I+GH ERRL   ESNE + +K A   ++GL  + C+GET E+ E   T  +   Q   I + V   ++ N V+AYEP+WAI TGK A P+Q Q++H  +R +LF N    IA    I YGGSVN +N  EL  QPDVDG LVGGASLK + F  IIK+A
Sbjct:   59 HIALGAQNVDLHVSGAFTGEISAKMLKDIGAKYIIIGHIERRLYHKESNEDIANKFACLKNEGLIPVLCIGETKEENEKDQTKAICVRQLDYILNIVGTQAFKNAVIAYEPIWAIATGKSANPLQIQKIHKFIRSYLF-NHDQAIAEQVIIQYGGSVNASNAAELFNQPDVDGALVGGASLKADIFATIIKAA 250          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_BACHD (Triosephosphate isomerase OS=Bacillus halodurans GN=tpiA PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.694e-38
Identity = 93/203 (45.81%), Postives = 124/203 (61.08%), Query Frame = 3
Query:   66 GLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQT-KAIADRVSSWSNI-VLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 665
            GLV+ +   +  + AQN   ++ GAFTGEIS   L ++ + +VILGHSERR +  E++E V  K   A + GL  I CVGETLE+REA  T DVV  Q  K +         + V+AYEPVWAIGTGK ++   A +V   +RK +    S E A A RI YGGSV  AN  E  AQ D+DG LVGGASL P+ F+ ++++ +
Sbjct:   49 GLVQKAEGTELRIGAQNMHFEESGAFTGEISPVALSDMKVDYVILGHSERRDMFAETDELVNKKTHAAFAHGLTPIVCVGETLEEREANQTYDVVKTQVEKGLEGLTDEQVKVTVIAYEPVWAIGTGKSSSAEDANDVCSYIRKVVTEKFSQEAADAVRIQYGGSVKPANIAEYMAQSDIDGALVGGASLDPQSFLQLLEAVK 251          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_XANAC (Triosephosphate isomerase OS=Xanthomonas axonopodis pv. citri GN=tpiA PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.213e-38
Identity = 96/188 (51.06%), Postives = 121/188 (64.36%), Query Frame = 3
Query:  108 AQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 662
            AQ+    + GA+TGE+SA MLV++   + ++GHSERR    ES+E V  K A AL  GL  + CVGE+LEQREAG T  ++ AQ   +   V S  ++  VLAYEP+WAIGTG+ ATP QAQ VH  LR  + A     IA +  I+YGGSV   N  EL AQPDVDG LVGGASL  E F+ I ++A
Sbjct:   62 AQDVSSNEKGAYTGEVSASMLVDVGAGYGLVGHSERRQYHQESSELVARKFAAALHAGLIPVLCVGESLEQREAGQTEAILRAQLDPVLALVGSAGFAGAVLAYEPIWAIGTGRTATPEQAQAVHAFLRGEV-AKADARIADSLPILYGGSVKPDNAGELFAQPDVDGGLVGGASLVAEDFLAIARAA 248          
The following BLAST results are available for this feature:
BLAST of CX295728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_SODGM9.932e-3947.89Triosephosphate isomerase OS=Sodalis glossinidius ... [more]
TPIS_EXIS29.932e-3947.89Triosephosphate isomerase OS=Exiguobacterium sibir... [more]
TPIS_RHOFD1.297e-3851.32Triosephosphate isomerase OS=Rhodoferax ferrireduc... [more]
TPIS_PSEMY1.297e-3849.74Triosephosphate isomerase OS=Pseudomonas mendocina... [more]
TPIS_LACCB1.297e-3849.73Triosephosphate isomerase OS=Lactobacillus casei (... [more]
TPIS_LACC31.297e-3849.73Triosephosphate isomerase OS=Lactobacillus casei (... [more]
TPIS_HALHL1.297e-3847.37Triosephosphate isomerase OS=Halorhodospira haloph... [more]
TPIS_BAUCH1.694e-3848.19Triosephosphate isomerase OS=Baumannia cicadellini... [more]
TPIS_BACHD1.694e-3845.81Triosephosphate isomerase OS=Bacillus halodurans G... [more]
TPIS_XANAC2.213e-3851.06Triosephosphate isomerase OS=Xanthomonas axonopodi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05075C06SK DroRLeaf1 Citrus clementina cDNA clone C05075C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295728 ID=CX295728; Name=CX295728; organism=Citrus clementina; type=EST; length=720bp
CTGAAGGTCAAGTTCCATCTTCTGATGTCGTTGAGGTCGTTGTTAGCCCT
CCGTTTGTGTTTCTTGGACTGGTGAAGAGTTCGTTGAGGCCTGATTTTCA
TGTTGCGGCACAGAATTGCTGGGTCAAGAAGGGAGGTGCTTTCACCGGTG
AGATTAGTGCGGAAATGCTCGTCAATTTGGATATTCCTTGGGTCATTCTT
GGTCATTCTGAAAGGAGACTCATTTTGAATGAATCAAATGAGTTTGTTGG
GGATAAGGTTGCATATGCACTTTCTCAAGGTTTGAAGGTGATTGCTTGTG
TTGGTGAGACACTTGAGCAGCGTGAAGCAGGATCTACTATGGATGTTGTT
GCTGCACAAACTAAAGCAATCGCAGATCGAGTCTCAAGCTGGTCAAACAT
TGTTTTGGCCTATGAACCTGTGTGGGCTATTGGAACTGGGAAGGTTGCCA
CTCCAGTGCAGGCTCAAGAAGTACATTTTGAACTGAGGAAATGGCTTTTT
GCAAACACCAGTCCTGAAATTGCTGCAGCAACACGGATCATCTACGGAGG
ATCCGTAAATGGTGCAAACTGCAAGGAATTGGCTGCACAGCCTGATGTTG
ACGGATTTTTGGTTGGTGGTGCTTCGTTGAAGCCGGAGTTCATTGACATC
ATCAAATCTGCTGAGCTGAAGTAAATTCTTGAGCTTTATTTCAGGGCAGT
TTGCTGATGAGTATTACTGT
back to top