CX295728

Overview
NameCX295728
Unique NameCX295728
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_SHESR (Triosephosphate isomerase OS=Shewanella sp. (strain MR-7) GN=tpiA PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.434e-37
Identity = 87/186 (46.77%), Postives = 118/186 (63.44%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDI 650
            + AQN      GA+TGE+S +ML +    +VI+GHSERR +  E++  V +K A A   GL  I CVGE+   REA  T +V+A +   +  +    ++ N ++AYEP+WA+GTGK ATP QAQEVH  +RK L +  SP I    RI+YGGSV  +N  +L AQPDVDG L+GGASL   EF+ +
Sbjct:   69 MGAQNLSQHDFGAYTGEVSGQMLKDCGCRYVIIGHSERRRMYGETSNIVAEKFAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDIVIQKNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRL-SEVSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGASLNSTEFLSL 253          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_SHESM (Triosephosphate isomerase OS=Shewanella sp. (strain MR-4) GN=tpiA PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.434e-37
Identity = 87/186 (46.77%), Postives = 118/186 (63.44%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDI 650
            + AQN      GA+TGE+S +ML +    +VI+GHSERR +  E++  V +K A A   GL  I CVGE+   REA  T +V+A +   +  +    ++ N ++AYEP+WA+GTGK ATP QAQEVH  +RK L +  SP I    RI+YGGSV  +N  +L AQPDVDG L+GGASL   EF+ +
Sbjct:   69 MGAQNLSQHDFGAYTGEVSGQMLKDCGCRYVIIGHSERRRMYGETSNIVAEKFAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDIVIQKNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRL-SEVSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGASLNSSEFLSL 253          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_SHESA (Triosephosphate isomerase OS=Shewanella sp. (strain ANA-3) GN=tpiA PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.434e-37
Identity = 87/186 (46.77%), Postives = 118/186 (63.44%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDI 650
            + AQN      GA+TGE+S +ML +    +VI+GHSERR +  E++  V +K A A   GL  I CVGE+   REA  T +V+A +   +  +    ++ N ++AYEP+WA+GTGK ATP QAQEVH  +RK L +  SP I    RI+YGGSV  +N  +L AQPDVDG L+GGASL   EF+ +
Sbjct:   69 MGAQNLSQHDFGAYTGEVSGQMLKDCGCRYVIIGHSERRRMYGETSNIVAEKFAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDIVIQKNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRL-SEVSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGASLNSTEFLSL 253          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_SHEON (Triosephosphate isomerase OS=Shewanella oneidensis GN=tpiA PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.434e-37
Identity = 87/186 (46.77%), Postives = 118/186 (63.44%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDI 650
            + AQN      GA+TGE+S +ML +    +VI+GHSERR +  E++  V +K A A   GL  I CVGE+   REA  T +V+A +   +  +    ++ N ++AYEP+WA+GTGK ATP QAQEVH  +RK L +  SP I    RI+YGGSV  +N  +L AQPDVDG L+GGASL   EF+ +
Sbjct:   69 MGAQNLSQHDFGAYTGEVSGQMLKDCGCRYVIIGHSERRRMYGETSNIVAEKFAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDIVIQKNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRL-SEVSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGASLNSTEFLSL 253          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_CLOPH (Triosephosphate isomerase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=tpiA PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.434e-37
Identity = 88/196 (44.90%), Postives = 121/196 (61.73%), Query Frame = 3
Query:   72 VKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSW--SNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDII 653
            ++++   +  + A+N + ++ GA+TGEI+  ML ++ + +VI+GHSERR    ES+  V  KV  AL  G+  I C GE+L QRE G T+D +  Q K     V++   +  V+AYEP+WAIGTGKVAT  QAQEV   +R  +        A A RI YGGSV  A+  EL  Q D+DG LVGGASLKP+F  I+
Sbjct:   50 IEAAKGSNISIGAENMFYEESGAYTGEIAPNMLTDIGVKYVIIGHSERREYFAESDITVNKKVLKALEHGITPIICCGESLTQREQGITIDWIRQQIKIAFLNVTAEQAATTVIAYEPIWAIGTGKVATTEQAQEVCAAIRVCIGELYGETTAEAIRIQYGGSVTAASAPELFTQSDIDGGLVGGASLKPDFGQIV 245          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_AZOSB (Triosephosphate isomerase OS=Azoarcus sp. (strain BH72) GN=tpiA PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.434e-37
Identity = 93/201 (46.27%), Postives = 123/201 (61.19%), Query Frame = 3
Query:   69 LVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDIIKSA 662
            LV  SL     + AQ+    + GA+TGE+SA MLV     +VI+GHSERR +  +S++ VG K A AL+ GL  I CVGETL +RE G    V+  Q +A+AD V   +   +V+AYEPVWAIGTG+ ATP Q  + H  +R W  A      A+A RI+YGGSV   N   L +  DVDG L+GGASL   +F+ I ++A
Sbjct:   48 LVAGSL---IELGAQDVSEYEQGAYTGEVSAAMLVEFGCRYVIVGHSERRALFGDSDQVVGRKAASALAAGLTPIVCVGETLAERELGEVEAVIRRQLQAVADCVGGEALPTLVVAYEPVWAIGTGRSATPEQVAQTHGFIRAWFSARCD---ASAVRILYGGSVKPENAAVLFSTDDVDGGLIGGASLVGSDFVAICRAA 242          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_SHESW (Triosephosphate isomerase OS=Shewanella sp. (strain W3-18-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.873e-37
Identity = 87/186 (46.77%), Postives = 118/186 (63.44%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDI 650
            + AQN      GA+TGE+S +ML +    +VI+GHSERR +  E++  V +K A A   GL  I CVGE+   REA  T +V+A +   +  +    ++ N ++AYEP+WA+GTGK ATP QAQEVH  +RK L +  SP I    RI+YGGSV  +N  +L AQPDVDG L+GGASL   EF+ +
Sbjct:   69 MGAQNLSQHDFGAYTGEVSGQMLKDSGCRYVIIGHSERRRMYGETSNIVAEKFAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDIVIQKNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRL-SEVSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGASLNSSEFLSL 253          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_SHEPC (Triosephosphate isomerase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=tpiA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.873e-37
Identity = 87/186 (46.77%), Postives = 118/186 (63.44%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDI 650
            + AQN      GA+TGE+S +ML +    +VI+GHSERR +  E++  V +K A A   GL  I CVGE+   REA  T +V+A +   +  +    ++ N ++AYEP+WA+GTGK ATP QAQEVH  +RK L +  SP I    RI+YGGSV  +N  +L AQPDVDG L+GGASL   EF+ +
Sbjct:   69 MGAQNLSQHDFGAYTGEVSGQMLKDSGCRYVIIGHSERRRMYGETSNIVAEKFAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDIVIQKNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRL-SEVSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGASLNSSEFLSL 253          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_SHEB9 (Triosephosphate isomerase OS=Shewanella baltica (strain OS195) GN=tpiA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.873e-37
Identity = 87/186 (46.77%), Postives = 118/186 (63.44%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDI 650
            + AQN      GA+TGE+S +ML +    +VI+GHSERR +  E++  V +K A A   GL  I CVGE+   REA  T +V+A +   +  +    ++ N ++AYEP+WA+GTGK ATP QAQEVH  +RK L +  SP I    RI+YGGSV  +N  +L AQPDVDG L+GGASL   EF+ +
Sbjct:   69 MGAQNLSQHDFGAYTGEVSGQMLKDSGCRYVIIGHSERRRMYGETSNIVAEKFAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDIVIQKNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRL-SEVSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGASLNSSEFLSL 253          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_SHEB8 (Triosephosphate isomerase OS=Shewanella baltica (strain OS185) GN=tpiA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.873e-37
Identity = 87/186 (46.77%), Postives = 118/186 (63.44%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDI 650
            + AQN      GA+TGE+S +ML +    +VI+GHSERR +  E++  V +K A A   GL  I CVGE+   REA  T +V+A +   +  +    ++ N ++AYEP+WA+GTGK ATP QAQEVH  +RK L +  SP I    RI+YGGSV  +N  +L AQPDVDG L+GGASL   EF+ +
Sbjct:   69 MGAQNLSQHDFGAYTGEVSGQMLKDSGCRYVIIGHSERRRMYGETSNIVAEKFAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDIVIQKNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRL-SEVSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGASLNSSEFLSL 253          
The following BLAST results are available for this feature:
BLAST of CX295728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_SHESR1.434e-3746.77Triosephosphate isomerase OS=Shewanella sp. (strai... [more]
TPIS_SHESM1.434e-3746.77Triosephosphate isomerase OS=Shewanella sp. (strai... [more]
TPIS_SHESA1.434e-3746.77Triosephosphate isomerase OS=Shewanella sp. (strai... [more]
TPIS_SHEON1.434e-3746.77Triosephosphate isomerase OS=Shewanella oneidensis... [more]
TPIS_CLOPH1.434e-3744.90Triosephosphate isomerase OS=Clostridium phytoferm... [more]
TPIS_AZOSB1.434e-3746.27Triosephosphate isomerase OS=Azoarcus sp. (strain ... [more]
TPIS_SHESW1.873e-3746.77Triosephosphate isomerase OS=Shewanella sp. (strai... [more]
TPIS_SHEPC1.873e-3746.77Triosephosphate isomerase OS=Shewanella putrefacie... [more]
TPIS_SHEB91.873e-3746.77Triosephosphate isomerase OS=Shewanella baltica (s... [more]
TPIS_SHEB81.873e-3746.77Triosephosphate isomerase OS=Shewanella baltica (s... [more]

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Properties
Property NameValue
Genbank descriptionC05075C06SK DroRLeaf1 Citrus clementina cDNA clone C05075C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295728 ID=CX295728; Name=CX295728; organism=Citrus clementina; type=EST; length=720bp
CTGAAGGTCAAGTTCCATCTTCTGATGTCGTTGAGGTCGTTGTTAGCCCT
CCGTTTGTGTTTCTTGGACTGGTGAAGAGTTCGTTGAGGCCTGATTTTCA
TGTTGCGGCACAGAATTGCTGGGTCAAGAAGGGAGGTGCTTTCACCGGTG
AGATTAGTGCGGAAATGCTCGTCAATTTGGATATTCCTTGGGTCATTCTT
GGTCATTCTGAAAGGAGACTCATTTTGAATGAATCAAATGAGTTTGTTGG
GGATAAGGTTGCATATGCACTTTCTCAAGGTTTGAAGGTGATTGCTTGTG
TTGGTGAGACACTTGAGCAGCGTGAAGCAGGATCTACTATGGATGTTGTT
GCTGCACAAACTAAAGCAATCGCAGATCGAGTCTCAAGCTGGTCAAACAT
TGTTTTGGCCTATGAACCTGTGTGGGCTATTGGAACTGGGAAGGTTGCCA
CTCCAGTGCAGGCTCAAGAAGTACATTTTGAACTGAGGAAATGGCTTTTT
GCAAACACCAGTCCTGAAATTGCTGCAGCAACACGGATCATCTACGGAGG
ATCCGTAAATGGTGCAAACTGCAAGGAATTGGCTGCACAGCCTGATGTTG
ACGGATTTTTGGTTGGTGGTGCTTCGTTGAAGCCGGAGTTCATTGACATC
ATCAAATCTGCTGAGCTGAAGTAAATTCTTGAGCTTTATTTCAGGGCAGT
TTGCTGATGAGTATTACTGT
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