CX295728

Overview
NameCX295728
Unique NameCX295728
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_SHEB5 (Triosephosphate isomerase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=tpiA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.873e-37
Identity = 87/186 (46.77%), Postives = 118/186 (63.44%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDI 650
            + AQN      GA+TGE+S +ML +    +VI+GHSERR +  E++  V +K A A   GL  I CVGE+   REA  T +V+A +   +  +    ++ N ++AYEP+WA+GTGK ATP QAQEVH  +RK L +  SP I    RI+YGGSV  +N  +L AQPDVDG L+GGASL   EF+ +
Sbjct:   69 MGAQNLSQHDFGAYTGEVSGQMLKDSGCRYVIIGHSERRRMYGETSNIVAEKFAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDIVIQKNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRL-SEVSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGASLNSSEFLSL 253          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_IDILO (Triosephosphate isomerase OS=Idiomarina loihiensis GN=tpiA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.873e-37
Identity = 88/194 (45.36%), Postives = 121/194 (62.37%), Query Frame = 3
Query:   93 DFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTK-AIADRVSSWS-NIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSAE 665
            D  + AQN     GGAFTGEIS   L    + +V++GHSERR +  E+++ V +K    ++ G+  + CVGE   QR+ G+T +VVA Q + A+AD     +  IVLAYEPVWAIGTG+ A+P QAQ+VH +LR  L       I     ++YGGSV   N  EL AQ D+DG L+GGASLK  +F+ I ++A+
Sbjct:   59 DIAIGAQNVSEHTGGAFTGEISTAQLQEFGVSYVLVGHSERRQLFAETDKMVNEKALATVNAGMTAVICVGENKAQRDEGNTWEVVAQQAQAALADLPKEQAGKIVLAYEPVWAIGTGETASPEQAQDVHAKLRA-LLVEQFGAIGEKMPLLYGGSVKADNAAELFAQKDIDGGLIGGASLKESDFVAICQAAQ 251          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_GEOBB (Triosephosphate isomerase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=tpiA PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.446e-37
Identity = 89/191 (46.60%), Postives = 119/191 (62.30%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSAE 665
            +AAQ+ + ++ GAFTGE+S  ML++     VI+GHSERR    E+ E V  KV  AL   L  I C+GETLE REAG T  V+  Q K   + ++   ++ +++AYEPVWAIGTGKVA+  QAQE H  +R  +        A   RI+YGGSV   N K L ++PD+DG LVGGASLK   F  I++ +E
Sbjct:   61 LAAQDVFWEEEGAFTGEVSPRMLLDAGASHVIIGHSERRQYFGETEETVNKKVKAALKGALVPIVCIGETLEAREAGDTFKVLERQLKGGLEGLTGTQFAPVIVAYEPVWAIGTGKVASDDQAQEAHAFIRGVIAGLFGKSAADKVRILYGGSVKPDNVKGLMSRPDIDGALVGGASLKGASFASIVRYSE 251          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_BACP2 (Triosephosphate isomerase OS=Bacillus pumilus (strain SAFR-032) GN=tpiA PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.446e-37
Identity = 88/194 (45.36%), Postives = 121/194 (62.37%), Query Frame = 3
Query:   93 DFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQT-KAIAD-RVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 665
            D  + AQN   ++ GAFTGEIS   L +L I + ++GHSERR    E++E V  K   A   G+  I CVGETLE+REAG T ++VA Q  KA+A       +  V+AYEP+WAIGTGK +T   A +V   +R+ + +    E A + RI YGGSV  AN KE  A+ D+DG LVGGASL+P+ F+ +++  +
Sbjct:   58 DLKIGAQNMHFEENGAFTGEISPAALKDLGIGYSVIGHSERREFFAETDETVNKKAHAAFKHGIVPIICVGETLEEREAGKTNELVADQVKKALAGFTTQQVAESVIAYEPIWAIGTGKSSTAKDANDVCAHIRQTVASEYGQEAADSLRIQYGGSVKPANIKEYMAESDIDGALVGGASLEPQSFVQLLEEGQ 251          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_STAES (Triosephosphate isomerase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=tpiA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.195e-37
Identity = 87/201 (43.28%), Postives = 121/201 (60.20%), Query Frame = 3
Query:   72 VKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 665
            VK        + AQN + ++ GA+TGE S   L  L + +V++GHSERR   +E++E V  K     + G+  I CVGE+ E+REAG    +V  Q K   + +S      +V+AYEP+WAIGTGK +T   A E+   +R+ L   +S E+A ATRI YGGSV   N KE  AQ D+DG LVGGASLK E F+ +++ A+
Sbjct:   53 VKDGKAKGLKIGAQNAYFEESGAYTGETSPVALSELGVKYVVIGHSERRDYFHETDEEVNKKAHAIFNHGMTPIICVGESDEEREAGKANKIVGNQVKKAVEGLSDDQLKEVVIAYEPIWAIGTGKSSTSEDANEMCAHVRQTLADLSSQEVADATRIQYGGSVKPNNIKEYMAQSDIDGALVGGASLKVEDFVQLLEGAK 253          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_STAEQ (Triosephosphate isomerase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=tpiA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.195e-37
Identity = 87/201 (43.28%), Postives = 121/201 (60.20%), Query Frame = 3
Query:   72 VKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 665
            VK        + AQN + ++ GA+TGE S   L  L + +V++GHSERR   +E++E V  K     + G+  I CVGE+ E+REAG    +V  Q K   + +S      +V+AYEP+WAIGTGK +T   A E+   +R+ L   +S E+A ATRI YGGSV   N KE  AQ D+DG LVGGASLK E F+ +++ A+
Sbjct:   53 VKDGKAKGLKIGAQNAYFEESGAYTGETSPVALSELGVKYVVIGHSERRDYFHETDEEVNKKAHAIFNHGMTPIICVGESDEEREAGKANKIVGNQVKKAVEGLSDDQLKEVVIAYEPIWAIGTGKSSTSEDANEMCAHVRQTLADLSSQEVADATRIQYGGSVKPNNIKEYMAQSDIDGALVGGASLKVEDFVQLLEGAK 253          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_SHEPW (Triosephosphate isomerase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=tpiA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.195e-37
Identity = 88/194 (45.36%), Postives = 120/194 (61.86%), Query Frame = 3
Query:  105 AAQNCWVKKG---------GAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDI 650
            A   C V+ G         GA+TGEIS +ML +    +VI+GHSERR +  E+++ V +K A A   GL  I CVGE+   REA  T +V+A +   + ++    ++ N ++AYEP+WA+GTGK ATP QAQEVH  +RK L +  SP I    RI+YGGSV  +N  +L AQPDVDG L+GG SL   EF+ +
Sbjct:   61 ALNGCLVRMGTQNVSQHDFGAYTGEISGQMLKDSGCRYVIIGHSERRRMYGETSDIVAEKFAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDVVIEKNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRL-SEVSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGVSLNATEFLSL 253          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_SHEHH (Triosephosphate isomerase OS=Shewanella halifaxensis (strain HAW-EB4) GN=tpiA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.195e-37
Identity = 87/186 (46.77%), Postives = 118/186 (63.44%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDI 650
            + AQN      GA+TGEIS +ML +    +VI+GHSERR +  E++  V +K A A   GL  I CVGE+   REA  T +V+A +   + ++    ++ N ++AYEP+WA+GTGK ATP QAQEVH  +RK L +  SP I    RI+YGGSV  +N  +L AQPDVDG L+GG SL   EF+ +
Sbjct:   69 MGAQNLSQHDFGAYTGEISGQMLKDSGCRYVIIGHSERRRMYGETSVIVAEKFAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDVVIEKNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRL-SEVSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGVSLNATEFLSL 253          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_LACGA (Triosephosphate isomerase OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=tpiA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.195e-37
Identity = 87/192 (45.31%), Postives = 120/192 (62.50%), Query Frame = 3
Query:   69 LVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSW--SNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 638
            L K++   D H  A+N + +  GAFTGE S ++L  + I + I+GHSERR   +E++E +  K     + G+  I C GE+LE REA    D V AQ KA  D +++   S +V+AYEP+WAIGTGK A+  QA+E+   +R+ +    + E A   RI YGGSV  AN KEL ++PD+DG LVGGASL PE
Sbjct:   50 LKKAAEGSDLHTGAENAYFEVEGAFTGETSPKVLNEMGIDYCIIGHSERRGYFHETDEDINKKAKALFANGVTPIICCGESLETREANKQEDWVVAQIKAALDGLTAEQVSKLVIAYEPIWAIGTGKTASADQAEEMCKTIRETVKDLYNEETAENVRIQYGGSVKPANVKELMSKPDIDGGLVGGASLDPE 241          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_BACLD (Triosephosphate isomerase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=tpiA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.195e-37
Identity = 91/206 (44.17%), Postives = 129/206 (62.62%), Query Frame = 3
Query:   60 FLGLVKSSLR-PDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTK-AIADRVSSW-SNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 665
            FL  + S+++  D  V AQN   ++ GAFTGEIS   L +L + + ++GHSERR +  E++E V  K   A   G+  I CVGETLE+REA  T ++VA Q K A+A   +   +  V+AYEP+WAIGTGK +T   A EV   +RK + +      A + RI YGGSV  AN KE  A+ D+DG LVGGASL+P+ F+ ++++ +
Sbjct:   46 FLEKLTSAVKGTDLKVGAQNMHFEESGAFTGEISPAALKDLGVEYCVIGHSERREMFAETDETVNKKAHAAFKYGIVPIICVGETLEEREANKTNELVADQVKKALAGLTTEQVAASVIAYEPIWAIGTGKSSTAQDANEVCAHIRKTVASEFGQTAADSVRIQYGGSVKPANIKEYMAESDIDGALVGGASLEPQSFVQLLEAGQ 251          
The following BLAST results are available for this feature:
BLAST of CX295728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_SHEB51.873e-3746.77Triosephosphate isomerase OS=Shewanella baltica (s... [more]
TPIS_IDILO1.873e-3745.36Triosephosphate isomerase OS=Idiomarina loihiensis... [more]
TPIS_GEOBB2.446e-3746.60Triosephosphate isomerase OS=Geobacter bemidjiensi... [more]
TPIS_BACP22.446e-3745.36Triosephosphate isomerase OS=Bacillus pumilus (str... [more]
TPIS_STAES3.195e-3743.28Triosephosphate isomerase OS=Staphylococcus epider... [more]
TPIS_STAEQ3.195e-3743.28Triosephosphate isomerase OS=Staphylococcus epider... [more]
TPIS_SHEPW3.195e-3745.36Triosephosphate isomerase OS=Shewanella piezotoler... [more]
TPIS_SHEHH3.195e-3746.77Triosephosphate isomerase OS=Shewanella halifaxens... [more]
TPIS_LACGA3.195e-3745.31Triosephosphate isomerase OS=Lactobacillus gasseri... [more]
TPIS_BACLD3.195e-3744.17Triosephosphate isomerase OS=Bacillus licheniformi... [more]

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Properties
Property NameValue
Genbank descriptionC05075C06SK DroRLeaf1 Citrus clementina cDNA clone C05075C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295728 ID=CX295728; Name=CX295728; organism=Citrus clementina; type=EST; length=720bp
CTGAAGGTCAAGTTCCATCTTCTGATGTCGTTGAGGTCGTTGTTAGCCCT
CCGTTTGTGTTTCTTGGACTGGTGAAGAGTTCGTTGAGGCCTGATTTTCA
TGTTGCGGCACAGAATTGCTGGGTCAAGAAGGGAGGTGCTTTCACCGGTG
AGATTAGTGCGGAAATGCTCGTCAATTTGGATATTCCTTGGGTCATTCTT
GGTCATTCTGAAAGGAGACTCATTTTGAATGAATCAAATGAGTTTGTTGG
GGATAAGGTTGCATATGCACTTTCTCAAGGTTTGAAGGTGATTGCTTGTG
TTGGTGAGACACTTGAGCAGCGTGAAGCAGGATCTACTATGGATGTTGTT
GCTGCACAAACTAAAGCAATCGCAGATCGAGTCTCAAGCTGGTCAAACAT
TGTTTTGGCCTATGAACCTGTGTGGGCTATTGGAACTGGGAAGGTTGCCA
CTCCAGTGCAGGCTCAAGAAGTACATTTTGAACTGAGGAAATGGCTTTTT
GCAAACACCAGTCCTGAAATTGCTGCAGCAACACGGATCATCTACGGAGG
ATCCGTAAATGGTGCAAACTGCAAGGAATTGGCTGCACAGCCTGATGTTG
ACGGATTTTTGGTTGGTGGTGCTTCGTTGAAGCCGGAGTTCATTGACATC
ATCAAATCTGCTGAGCTGAAGTAAATTCTTGAGCTTTATTTCAGGGCAGT
TTGCTGATGAGTATTACTGT
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