CX295728

Overview
NameCX295728
Unique NameCX295728
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_SILPO (Triosephosphate isomerase OS=Silicibacter pomeroyi GN=tpiA PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.173e-37
Identity = 91/189 (48.15%), Postives = 110/189 (58.20%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDIIKSAE 665
            +  Q+C     GA TG+ISA ML +     VILGHSERR    E++  V DK   AL  GL  I C+GETL QREAG T+DVV AQ           + +V+AYEPVWAIGTG V T  Q  EVH  LR+ L      E A A R++YGGSV   N  E+ A  +VDG LVGGASL   +F  I+ + E
Sbjct:   59 IGGQDCHAVTAGAHTGDISAMMLADAGASAVILGHSERRADHGETDAQVCDKARAALEAGLIAIICIGETLAQREAGQTLDVVCAQLAGSVPDGIDGTRVVVAYEPVWAIGTGLVPTLEQIAEVHDTLRQQLIGRFGSETAEAIRLLYGGSVKPGNAAEIFAVSNVDGALVGGASLTAADFSPIVSALE 247          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_PSEHT (Triosephosphate isomerase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=tpiA PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.173e-37
Identity = 90/202 (44.55%), Postives = 124/202 (61.39%), Query Frame = 3
Query:   69 LVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 665
            LV + +        Q       GAFTGE+ A+++  L   +V++GHSERR I  ESN+ V  K A A   GL  I CVGE+  ++E G T  +VAAQ  A+ ++  V++  + V+AYEPVWAIGTGK A+P QAQ VH  +R  + A+ + ++A    I+YGGSVN  N + L AQ D+DG L+GGASLK + F  I  SA+
Sbjct:   46 LVSAMIASGVSTGTQTVSENTPGAFTGEVDAQLIKELGAQYVLVGHSERRSIYKESNDVVAAKFARAQQVGLTPILCVGESESEQENGKTEQIVAAQIDAVIEKLGVAALKDSVIAYEPVWAIGTGKTASPEQAQSVHKFIRDKI-ASLNSDLAQGLTILYGGSVNEKNSELLFAQTDIDGGLIGGASLKADSFTAICNSAK 246          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_DESVM (Triosephosphate isomerase OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=tpiA PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.173e-37
Identity = 85/184 (46.20%), Postives = 117/184 (63.59%), Query Frame = 3
Query:   96 FHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS---WSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 638
            + V  Q+ +    GA+TGEIS  ML++    WV+ GHSERR ++ ES+E VG K A++++ GLKV+ C+GET+E+REAG   +V+  Q +     V      + I +AYEPVWAIGTGKVA P +  E H  +R+ L A    E   A RI+YGGSV   N +E+ A  +VDG LVGGASL+ +
Sbjct:   61 YSVGGQDVYPAAEGAYTGEISPGMLMDCGCAWVLTGHSERRHVIGESDELVGAKTAFSINAGLKVVLCIGETIEEREAGRLGEVLERQLETGLAGVKGDAVPAAIAVAYEPVWAIGTGKVAGPPEIVEAHALVRQLLVARFG-EGGVAVRILYGGSVKPENAREIIALDNVDGVLVGGASLQAD 243          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_THEPX (Triosephosphate isomerase OS=Thermoanaerobacter sp. (strain X514) GN=tpiA PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.450e-37
Identity = 86/178 (48.31%), Postives = 111/178 (62.36%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 629
            + AQ+ + ++ GA+TGEIS  ML  + + +V++GHSERR    E++E V  KV  ALS GL  I CVGE+  QRE G T +VV +QTK     V+     N+V+AYEP+WAIGTGK AT   A EV   +R  + +    E A   RI YGGSV   N  EL A+ D+DG LVGGASL
Sbjct:   60 LGAQDMFWEEKGAYTGEISPLMLKEIGVKYVVIGHSERRQYFGETDEMVNKKVLSALSHGLSPIVCVGESFSQREEGKTFEVVLSQTKEALKGVTHDDIVNVVIAYEPIWAIGTGKTATAKDANEVIKAIRNTIASLYGKEKADLVRIQYGGSVKPENISELMAESDIDGALVGGASL 237          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_STRMK (Triosephosphate isomerase OS=Stenotrophomonas maltophilia (strain K279a) GN=tpiA PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.450e-37
Identity = 92/188 (48.94%), Postives = 121/188 (64.36%), Query Frame = 3
Query:  108 AQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDIIKSA 662
            AQ+    + GA+TGE+ A MLV +   + ++GHSERR   +ES+E V  K A A   GL  + CVGETLEQREAG T  V+A+Q   + + V  + ++  V+AYEPVWAIGTG+ AT  QAQ+VH  +R  + A     IA +  I+YGGSV   N  EL AQPDVDG LVGGASL   +F+ I ++A
Sbjct:   62 AQDVSSNEKGAYTGEVCAAMLVEVGARYGLVGHSERRQYHHESSELVARKFAAAQHAGLVPVLCVGETLEQREAGQTEAVIASQLAPVLELVGAAGFAQAVVAYEPVWAIGTGRTATKEQAQQVHAFIRGEV-ARIDARIADSLPIVYGGSVKPDNAGELFAQPDVDGGLVGGASLVAADFLAIARAA 248          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_STAS1 (Triosephosphate isomerase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=tpiA PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.450e-37
Identity = 85/202 (42.08%), Postives = 122/202 (60.40%), Query Frame = 3
Query:   69 LVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSAE 665
            LV         + AQN + +  GAFTGE S   L +L + +V++GHSERR I +E++E +  K     + G+  I CVGET E+RE+G   +VV  Q K   + +S      +V+AYEP+WAIGTGK +T   A E+   +R+ +   +S  +A ATRI YGGSV   N KE  A+ D+DG LVGGASLK  +F+ +++ A+
Sbjct:   52 LVNDGKAKGLQIGAQNAYFEDNGAFTGETSPVALADLGVKYVVIGHSERREIFHETDEEINKKAHAIFNHGMTPIVCVGETDEERESGKANEVVGNQVKKAVEGLSEAQLQQLVIAYEPIWAIGTGKSSTAKDANEMCAFVRQTVAELSSQTVADATRIQYGGSVKPNNIKEYMAESDIDGALVGGASLKVDDFVQLLEGAK 253          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_SHEPA (Triosephosphate isomerase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.450e-37
Identity = 86/186 (46.24%), Postives = 117/186 (62.90%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDI 650
            +  QN      GA+TGEIS +ML +    +VI+GHSERR +  E++  V +K A A   GL  I CVGE+   REA  T +V+A +   + ++    ++ N ++AYEP+WA+GTGK ATP QAQEVH  +RK L +  SP I    RI+YGGSV  +N  +L AQPDVDG L+GG SL   EF+ +
Sbjct:   69 MGTQNLSQHDFGAYTGEISGQMLKDSGCRYVIIGHSERRRMYGETSNIVAEKFAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDVVIEKNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRL-SEVSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGVSLNATEFLSL 253          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_PSE14 (Triosephosphate isomerase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=tpiA PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.450e-37
Identity = 86/191 (45.03%), Postives = 123/191 (64.40%), Query Frame = 3
Query:  102 VAAQNCWVK-KGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 662
            V AQ+  ++ + GA TGEI++  L +     V++GHSERR ++ E ++ +  K A   + GL  + C+GETLE+R+AG T++VV  Q  ++     VS+  N V+AYEPVWAIGTG  A+P +AQEVH  +R  L A  + E+A   R++YGGSV  AN  EL + PD+DG L+GGASL   EF  I ++A
Sbjct:   60 VGAQDAAIQAEQGALTGEIASSQLADAGCKLVLVGHSERRQLIGEQDDVLNKKFAAIQASGLTPVLCIGETLEERKAGQTLEVVGRQLDSVIAEFGVSALINAVIAYEPVWAIGTGLTASPQEAQEVHAAIRAHL-AKENAEVAQGVRLLYGGSVKAANAVELFSMPDIDGGLIGGASLNADEFGAICRAA 249          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_GEOKA (Triosephosphate isomerase OS=Geobacillus kaustophilus GN=tpiA PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.450e-37
Identity = 91/200 (45.50%), Postives = 123/200 (61.50%), Query Frame = 3
Query:   69 LVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQT-KAIADRV-SSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDIIKS 659
            LV+++   D  + AQ       GA+TGE+S  ML +L + +VILGHSERR +  E++E V  KV  A ++GL  I C GE+LE+REAG T  VVA+Q  KA+A          V+AYEP+WAIGTGK +TP  A  V   +R  +     PE A A RI YGGSV   N ++  AQ  +DG LVGGASL+P  F+ ++++
Sbjct:   50 LVQAADGTDLKIGAQTMHFADQGAYTGEVSPVMLKDLGVTYVILGHSERRQMFAETDETVNKKVLAAFTRGLIPIICCGESLEEREAGQTNAVVASQVEKALAGLTPEQVKQAVIAYEPIWAIGTGKSSTPEDANSVCGHIRSVVSRLFGPEAAEAIRIQYGGSVKPDNIRDFLAQEQIDGALVGGASLEPASFLQLVEA 249          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_ALKMQ (Triosephosphate isomerase OS=Alkaliphilus metalliredigens (strain QYMF) GN=tpiA PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.450e-37
Identity = 86/187 (45.99%), Postives = 115/187 (61.50%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDII 653
            + AQN   +  GAFTGEISAEML  L + ++++GHSERR   NE++E V  K+  AL Q L  I CVGETL++REA  T DV+  Q     + +   S  +IV+AYEP+WAIGTGK A+   A  V   +R+ +       I+   RI YGGSV   N  E+  + D+DG LVGGASLK + F+ I+
Sbjct:   60 LGAQNMHWEDNGAFTGEISAEMLKELGVDYILIGHSERRQYFNETDETVNKKIKKALEQKLMPILCVGETLQEREAAQTFDVIKNQITIDLEGILPDSMKDIVIAYEPIWAIGTGKTASSQDANHVIAYIRQLIQEKYDDGISETVRIQYGGSVKPENATEIMNEEDIDGALVGGASLKADAFLGIV 246          
The following BLAST results are available for this feature:
BLAST of CX295728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_SILPO4.173e-3748.15Triosephosphate isomerase OS=Silicibacter pomeroyi... [more]
TPIS_PSEHT4.173e-3744.55Triosephosphate isomerase OS=Pseudoalteromonas hal... [more]
TPIS_DESVM4.173e-3746.20Triosephosphate isomerase OS=Desulfovibrio vulgari... [more]
TPIS_THEPX5.450e-3748.31Triosephosphate isomerase OS=Thermoanaerobacter sp... [more]
TPIS_STRMK5.450e-3748.94Triosephosphate isomerase OS=Stenotrophomonas malt... [more]
TPIS_STAS15.450e-3742.08Triosephosphate isomerase OS=Staphylococcus saprop... [more]
TPIS_SHEPA5.450e-3746.24Triosephosphate isomerase OS=Shewanella pealeana (... [more]
TPIS_PSE145.450e-3745.03Triosephosphate isomerase OS=Pseudomonas syringae ... [more]
TPIS_GEOKA5.450e-3745.50Triosephosphate isomerase OS=Geobacillus kaustophi... [more]
TPIS_ALKMQ5.450e-3745.99Triosephosphate isomerase OS=Alkaliphilus metallir... [more]

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Properties
Property NameValue
Genbank descriptionC05075C06SK DroRLeaf1 Citrus clementina cDNA clone C05075C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295728 ID=CX295728; Name=CX295728; organism=Citrus clementina; type=EST; length=720bp
CTGAAGGTCAAGTTCCATCTTCTGATGTCGTTGAGGTCGTTGTTAGCCCT
CCGTTTGTGTTTCTTGGACTGGTGAAGAGTTCGTTGAGGCCTGATTTTCA
TGTTGCGGCACAGAATTGCTGGGTCAAGAAGGGAGGTGCTTTCACCGGTG
AGATTAGTGCGGAAATGCTCGTCAATTTGGATATTCCTTGGGTCATTCTT
GGTCATTCTGAAAGGAGACTCATTTTGAATGAATCAAATGAGTTTGTTGG
GGATAAGGTTGCATATGCACTTTCTCAAGGTTTGAAGGTGATTGCTTGTG
TTGGTGAGACACTTGAGCAGCGTGAAGCAGGATCTACTATGGATGTTGTT
GCTGCACAAACTAAAGCAATCGCAGATCGAGTCTCAAGCTGGTCAAACAT
TGTTTTGGCCTATGAACCTGTGTGGGCTATTGGAACTGGGAAGGTTGCCA
CTCCAGTGCAGGCTCAAGAAGTACATTTTGAACTGAGGAAATGGCTTTTT
GCAAACACCAGTCCTGAAATTGCTGCAGCAACACGGATCATCTACGGAGG
ATCCGTAAATGGTGCAAACTGCAAGGAATTGGCTGCACAGCCTGATGTTG
ACGGATTTTTGGTTGGTGGTGCTTCGTTGAAGCCGGAGTTCATTGACATC
ATCAAATCTGCTGAGCTGAAGTAAATTCTTGAGCTTTATTTCAGGGCAGT
TTGCTGATGAGTATTACTGT
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