CX295728

Overview
NameCX295728
Unique NameCX295728
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_THETN (Triosephosphate isomerase OS=Thermoanaerobacter tengcongensis GN=tpiA PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.118e-37
Identity = 88/181 (48.62%), Postives = 110/181 (60.77%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 638
            + AQN + ++ GA+TGEIS  ML  + + +V++GHSERR    E++E V  KV  ALS  LK I CVGE+L QRE G T DVV  QT+     VS    + +V+AYEPVWAIGTGK ATP  A EV   +R  +      + A   RI YGGSV   N     A+ D+DG LVGGASL  E
Sbjct:   60 LGAQNMFWEEKGAYTGEISPVMLKEIGVTYVVIGHSERRQYFKETDEMVNKKVLSALSHDLKPIVCVGESLSQREEGKTYDVVLTQTREALKGVSEEDITKVVIAYEPVWAIGTGKNATPQDANEVIKAIRNTIAELYGKDKAEMVRIQYGGSVKPDNISGFMAESDIDGALVGGASLVAE 240          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_STRM5 (Triosephosphate isomerase OS=Stenotrophomonas maltophilia (strain R551-3) GN=tpiA PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.118e-37
Identity = 92/188 (48.94%), Postives = 121/188 (64.36%), Query Frame = 3
Query:  108 AQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDIIKSA 662
            AQ+    + GA+TGE+ A MLV +   + ++GHSERR   +ES+E V  K A A   GL  + CVGETLEQREAG T  V+A+Q   + + V  + ++  V+AYEPVWAIGTG+ AT  QAQ+VH  +R  + A     IA +  I+YGGSV   N  EL AQPDVDG LVGGASL   +F+ I ++A
Sbjct:   62 AQDVSSNEKGAYTGEVCAAMLVEVGARYGLVGHSERRQYHHESSELVARKFAAAQHAGLVPVLCVGETLEQREAGQTNVVIASQLAPVLELVGAAGFAKAVVAYEPVWAIGTGRTATKEQAQQVHAFIRGEV-ARIDARIADSLPIVYGGSVKPDNAGELFAQPDVDGGLVGGASLVAADFLAIARAA 248          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_SHEFN (Triosephosphate isomerase OS=Shewanella frigidimarina (strain NCIMB 400) GN=tpiA PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.118e-37
Identity = 86/186 (46.24%), Postives = 118/186 (63.44%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDI 650
            + AQN      GA+TGEIS +ML +    +VI+GHSERR +  E++  V +K A A   GL  I CVGE+   REA  T +V+A +   + ++    ++ N ++AYEP+WA+GTGK ATP QAQEVH  +R  L +  SP I    RI+YGGSV  +N  ++ AQPDVDG L+GGASL   EF+ +
Sbjct:   69 MGAQNLSQHDFGAYTGEISGQMLKDSGCRYVIIGHSERRRMYGETSNIVAEKFAAAQKYGLTPILCVGESGPAREARRTFEVIAEELDIVIEKNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRSRL-SEVSPFIGENIRILYGGSVTPSNAADIFAQPDVDGGLIGGASLNSSEFLSL 253          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_STRSY (Triosephosphate isomerase OS=Streptococcus suis (strain 05ZYH33) GN=tpiA PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.296e-37
Identity = 86/187 (45.99%), Postives = 116/187 (62.03%), Query Frame = 3
Query:   93 DFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI-----ADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 638
            +  VAAQNC+ +  GAFTGE S ++L  + + +V++GHSERR   +E++E +  K       GL  I C GE+LE  EAG  ++ V AQ  A      AD+V+S   +V+AYEP+WAIGTGK AT   AQ +   +R  + A+   E+A   R+ YGGSVN +N  E  A PDVDG LVGGASL+ E
Sbjct:   59 ELKVAAQNCYFEDAGAFTGETSPKVLAEMGVNYVVIGHSERRDYFHETDEDINKKAHAIFRNGLTPIICCGESLETYEAGKAVEFVGAQVSAALKDLTADQVAS---LVIAYEPIWAIGTGKSATKDDAQNMCKAVRDVVAADFGQEVADKVRVQYGGSVNPSNVAEYMACPDVDGALVGGASLEAE 242          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_STRS2 (Triosephosphate isomerase OS=Streptococcus suis (strain 98HAH33) GN=tpiA PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.296e-37
Identity = 86/187 (45.99%), Postives = 116/187 (62.03%), Query Frame = 3
Query:   93 DFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI-----ADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 638
            +  VAAQNC+ +  GAFTGE S ++L  + + +V++GHSERR   +E++E +  K       GL  I C GE+LE  EAG  ++ V AQ  A      AD+V+S   +V+AYEP+WAIGTGK AT   AQ +   +R  + A+   E+A   R+ YGGSVN +N  E  A PDVDG LVGGASL+ E
Sbjct:   59 ELKVAAQNCYFEDAGAFTGETSPKVLAEMGVNYVVIGHSERRDYFHETDEDINKKAHAIFRNGLTPIICCGESLETYEAGKAVEFVGAQVSAALKDLTADQVAS---LVIAYEPIWAIGTGKSATKDDAQNMCKAVRDVVAADFGQEVADKVRVQYGGSVNPSNVAEYMACPDVDGALVGGASLEAE 242          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_PSEU2 (Triosephosphate isomerase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=tpiA PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.296e-37
Identity = 85/191 (44.50%), Postives = 124/191 (64.92%), Query Frame = 3
Query:  102 VAAQNCWVK-KGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 662
            V AQ+  ++ + GA TGE+++  L +     V++GHSERR ++ E ++ +  K A   ++GL  + CVGETLE+R+AG T++VV  Q  ++     V++  N V+AYEPVWAIGTG  A+P +AQEVH  +R  L A  + E+A   R++YGGSV  AN  EL + PD+DG L+GGASL   EF  I ++A
Sbjct:   60 VGAQDAAIQAEQGALTGEVASSQLADAGCKLVLVGHSERRQLIGEQDDVLNKKFAAIQAKGLTPVLCVGETLEERKAGQTLEVVGRQLDSVIAEFGVNALVNAVIAYEPVWAIGTGLTASPQEAQEVHAAIRAQL-AKENAEVAQGVRLLYGGSVKAANAVELFSMPDIDGGLIGGASLNADEFGAICRAA 249          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_PSESM (Triosephosphate isomerase OS=Pseudomonas syringae pv. tomato GN=tpiA PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.296e-37
Identity = 85/191 (44.50%), Postives = 122/191 (63.87%), Query Frame = 3
Query:  102 VAAQNCWVK-KGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 662
            V AQ+  ++ + GA TGEI++  L +     V++GHSERR ++ E +E +  K A   + GL  + C+GETLE+R+AG T++VV  Q  ++     + +  N V+AYEPVWAIGTG  A+P +AQEVH  +R  L A  + E+A   R++YGGSV  AN  EL + PD+DG L+GGASL   EF  I ++A
Sbjct:   60 VGAQDAAIQAEQGALTGEIASSQLADAGCKLVLVGHSERRQLIGEQDEVLNKKFAAIQASGLTPVLCIGETLEERKAGQTLEVVGRQLDSVIAEFGIGALVNAVIAYEPVWAIGTGLTASPQEAQEVHAAIRAQL-AKENAEVAQGVRLLYGGSVKAANAVELFSMPDIDGGLIGGASLNADEFGAICRAA 249          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_DESVV (Triosephosphate isomerase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=tpiA PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.296e-37
Identity = 86/182 (47.25%), Postives = 118/182 (64.84%), Query Frame = 3
Query:   96 FHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTK-AIADRVSSW--SNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 632
            F +  Q+ +    GA+TGEI+  ML++    WV+ GHSERR IL E +E V  K A++L  GL+V+ C+GE L++REAG   DV+A Q +  +AD  +++   ++V+AYEPVWAIGTGKVA P +  E H  +R  L A    +  AA RI+YGGSV   N  EL +  +VDG LVGGASL+
Sbjct:   61 FAIGGQDVYPATEGAYTGEIAPGMLLDAGCGWVLTGHSERRHILGEDDETVARKTAFSLKAGLRVVLCIGEKLDEREAGRLEDVLAHQLQVGLADVDATYVPQSLVVAYEPVWAIGTGKVAGPAEVVEAHALVRSLLEARYGRD-GAAIRILYGGSVKPDNAAELLSLDNVDGLLVGGASLQ 241          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_DESVH (Triosephosphate isomerase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=tpiA PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.296e-37
Identity = 86/182 (47.25%), Postives = 118/182 (64.84%), Query Frame = 3
Query:   96 FHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTK-AIADRVSSW--SNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 632
            F +  Q+ +    GA+TGEI+  ML++    WV+ GHSERR IL E +E V  K A++L  GL+V+ C+GE L++REAG   DV+A Q +  +AD  +++   ++V+AYEPVWAIGTGKVA P +  E H  +R  L A    +  AA RI+YGGSV   N  EL +  +VDG LVGGASL+
Sbjct:   61 FAIGGQDVYPATEGAYTGEIAPGMLLDAGCGWVLTGHSERRHILGEDDETVARKTAFSLKAGLRVVLCIGEKLDEREAGRLEDVLAHQLQVGLADVDATYVPQSLVVAYEPVWAIGTGKVAGPAEVVEAHALVRSLLEARYGRD-GAAIRILYGGSVKPDNAAELLSLDNVDGLLVGGASLQ 241          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_BACST (Triosephosphate isomerase OS=Bacillus stearothermophilus GN=tpiA PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 9.296e-37
Identity = 91/200 (45.50%), Postives = 123/200 (61.50%), Query Frame = 3
Query:   69 LVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQT-KAIADRV-SSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDIIKS 659
            LV+++   D  + AQ       GA+TGE+S  ML +L + +VILGHSERR +  E++E V  KV  A ++GL  I C GE+LE+REAG T  VVA+Q  KA+A          V+AYEP+WAIGTGK +TP  A  V   +R  +     PE A A RI YGGSV   N ++  AQ  +DG LVGGASL+P  F+ ++++
Sbjct:   50 LVQAADGTDLKIGAQTMHFADQGAYTGEVSPVMLKDLGVTYVILGHSERRQMFAETDETVNKKVLAAFTRGLIPIICCGESLEEREAGQTNAVVASQVEKALAGLTPEQVKQAVIAYEPIWAIGTGKSSTPEDANSVCGHIRSVVSRLFGPEAAEAIRIQYGGSVKPDNIRDFLAQQQIDGPLVGGASLEPASFLQLVEA 249          
The following BLAST results are available for this feature:
BLAST of CX295728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_THETN7.118e-3748.62Triosephosphate isomerase OS=Thermoanaerobacter te... [more]
TPIS_STRM57.118e-3748.94Triosephosphate isomerase OS=Stenotrophomonas malt... [more]
TPIS_SHEFN7.118e-3746.24Triosephosphate isomerase OS=Shewanella frigidimar... [more]
TPIS_STRSY9.296e-3745.99Triosephosphate isomerase OS=Streptococcus suis (s... [more]
TPIS_STRS29.296e-3745.99Triosephosphate isomerase OS=Streptococcus suis (s... [more]
TPIS_PSEU29.296e-3744.50Triosephosphate isomerase OS=Pseudomonas syringae ... [more]
TPIS_PSESM9.296e-3744.50Triosephosphate isomerase OS=Pseudomonas syringae ... [more]
TPIS_DESVV9.296e-3747.25Triosephosphate isomerase OS=Desulfovibrio vulgari... [more]
TPIS_DESVH9.296e-3747.25Triosephosphate isomerase OS=Desulfovibrio vulgari... [more]
TPIS_BACST9.296e-3745.50Triosephosphate isomerase OS=Bacillus stearothermo... [more]

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Properties
Property NameValue
Genbank descriptionC05075C06SK DroRLeaf1 Citrus clementina cDNA clone C05075C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295728 ID=CX295728; Name=CX295728; organism=Citrus clementina; type=EST; length=720bp
CTGAAGGTCAAGTTCCATCTTCTGATGTCGTTGAGGTCGTTGTTAGCCCT
CCGTTTGTGTTTCTTGGACTGGTGAAGAGTTCGTTGAGGCCTGATTTTCA
TGTTGCGGCACAGAATTGCTGGGTCAAGAAGGGAGGTGCTTTCACCGGTG
AGATTAGTGCGGAAATGCTCGTCAATTTGGATATTCCTTGGGTCATTCTT
GGTCATTCTGAAAGGAGACTCATTTTGAATGAATCAAATGAGTTTGTTGG
GGATAAGGTTGCATATGCACTTTCTCAAGGTTTGAAGGTGATTGCTTGTG
TTGGTGAGACACTTGAGCAGCGTGAAGCAGGATCTACTATGGATGTTGTT
GCTGCACAAACTAAAGCAATCGCAGATCGAGTCTCAAGCTGGTCAAACAT
TGTTTTGGCCTATGAACCTGTGTGGGCTATTGGAACTGGGAAGGTTGCCA
CTCCAGTGCAGGCTCAAGAAGTACATTTTGAACTGAGGAAATGGCTTTTT
GCAAACACCAGTCCTGAAATTGCTGCAGCAACACGGATCATCTACGGAGG
ATCCGTAAATGGTGCAAACTGCAAGGAATTGGCTGCACAGCCTGATGTTG
ACGGATTTTTGGTTGGTGGTGCTTCGTTGAAGCCGGAGTTCATTGACATC
ATCAAATCTGCTGAGCTGAAGTAAATTCTTGAGCTTTATTTCAGGGCAGT
TTGCTGATGAGTATTACTGT
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