CX295728

Overview
NameCX295728
Unique NameCX295728
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_MYCMO (Triosephosphate isomerase OS=Mycoplasma mobile GN=tpiA PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.214e-36
Identity = 91/199 (45.73%), Postives = 123/199 (61.81%), Query Frame = 3
Query:   63 LGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIK 656
            LG+ K     +  +AAQN      GAFTGEISAEML++L +  V+LGHSERR   +E++E V  K+  A+   L  I CVGET  Q  +  + +V+  Q +     +S +S I++AYEP+WAIGTGK AT   AQ    E+ K++ + T+ +    T I YGGSV   N KEL +Q D+DG LVGGASL   +FID+IK
Sbjct:   52 LGIKKEGNFANLVIAAQNFHQNNSGAFTGEISAEMLLDLGVKMVVLGHSERREFFHETDEIVNMKMHQAIKNNLVPIVCVGETELQYNSNKSKEVIKNQIEKSLKNLSDFSKIIIAYEPIWAIGTGKTATVEYAQ----EMCKYIRSLTNEK----TIIQYGGSVKPNNIKELLSQKDIDGALVGGASLNVKDFIDLIK 242          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_LYSSC (Triosephosphate isomerase OS=Lysinibacillus sphaericus (strain C3-41) GN=tpiA PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.214e-36
Identity = 89/201 (44.28%), Postives = 122/201 (60.70%), Query Frame = 3
Query:   69 LVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKA--IADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 662
            LV+ +   +  + AQ    +  GAFTGEIS   L ++D+ +VILGHSERR   NE++E +  KVA AL+  +  I C GETLE+REAG+T   VA Q KA           ++V+AYEP+WAIGTGK AT   A +V   +R  +        A A RI YGGSV   N  EL ++  +DG LVGGASL+PE ++ ++++A
Sbjct:   50 LVQVASESELAIGAQTMHYENEGAFTGEISPAQLASVDVDYVILGHSERREYYNETDEAINKKVAAALAHNIVPIICCGETLEEREAGTTEQKVAGQIKAALAGFEAQQVEHMVIAYEPIWAIGTGKTATADDANQVCGAIRSVVEELFDAATANAVRIQYGGSVKPDNVHELLSKEHIDGALVGGASLQPESYLTLLEAA 250          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_LACS1 (Triosephosphate isomerase OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=tpiA PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.214e-36
Identity = 84/192 (43.75%), Postives = 121/192 (63.02%), Query Frame = 3
Query:   69 LVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSW--SNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 638
            L++++   D  VAA+NC+ +  GAFTGE S ++L  + + +V++GHSERR   +E++E +  K       GL  I C GE+LE REAG   + VA Q  A    +S+   +++V+AYEP+WAIGTGK AT  QA+E+   +RK +       +A   R+ YGGSV  AN KEL A+ ++DG LVGGASL P+
Sbjct:   50 LLENAKGSDLKVAAENCYFEDEGAFTGETSPKVLKEMGVDYVVIGHSERRDYFHETDEDINKKAHAIFRNGLTPIICCGESLETREAGKAEEWVANQVTAALKDLSAEQVASLVIAYEPIWAIGTGKTATADQAEEICAVVRKTVADLYDETVADKVRVQYGGSVKPANVKELMAKENIDGGLVGGASLVPD 241          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_HERA2 (Triosephosphate isomerase OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=tpiA PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.214e-36
Identity = 88/188 (46.81%), Postives = 113/188 (60.11%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWS--NIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIK 656
            + AQN   +  GA+TGEI+ +ML  L   +VILGHSERR    E++  +  K   AL+ GLK I CVGE   +R++G    VV  Q +     +S+     +V+AYEPVWAIGTG  ATP  AQ +H  +R  L A +    A A  I YGGSV   N  EL AQPD+DG LVGGASLK  +FI I++
Sbjct:   61 LGAQNMHYEAKGAYTGEIAPQMLKELGCSYVILGHSERRQYFGETDALINRKAHAALANGLKPIVCVGEVKAERDSGQAESVVVGQLRGSLAGLSAEQLRGVVIAYEPVWAIGTGDTATPADAQAMHARIRAELAALSDQATADAVIIQYGGSVKPDNVDELMAQPDIDGALVGGASLKAADFIRIVR 248          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_DEHE1 (Triosephosphate isomerase OS=Dehalococcoides ethenogenes (strain 195) GN=tpiA PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.214e-36
Identity = 89/192 (46.35%), Postives = 119/192 (61.98%), Query Frame = 3
Query:   99 HVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWL---FANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 662
            H+ AQN + ++ GA+TGEIS  ML ++  P+VI+GHSERR    E+ + V  K+  AL  G+  I CVGE LE+ E G T  ++  Q K     ++  S+I++AYEP+WAIGTGK AT  +A      +RK L   + NT+  I   T I+YGGSVN  N  EL  Q D+DG LVGGASLK E F+ I + A
Sbjct:   60 HLGAQNLFYEEKGAYTGEISPLMLQDI-CPYVIIGHSERRAYFGETGQVVNRKIKAALQAGIMPIVCVGEKLEENENGQTRQILETQMKEALAGINP-SSIIIAYEPIWAIGTGKAATAAEANNTISYIRKVLGDIWGNTASRI---TPILYGGSVNEKNTAELLCQSDIDGALVGGASLKAESFVSICRQA 246          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_CLOBA (Triosephosphate isomerase OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=tpiA PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.214e-36
Identity = 88/190 (46.32%), Postives = 113/190 (59.47%), Query Frame = 3
Query:   75 KSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKA-IADRVSSWS-NIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 638
            K++   +  VAAQN   ++ GAFTGE+S  ML  + I +V+LGHSERR   NE++E +  KV  A +  +  I C GETLEQRE+G T + +A Q K  IA      +  +V+AYEP+WAIGTGK AT  QA E    +R  +      E+A   RI YGGSV      E  A  D+DG LVGGASLK E
Sbjct:   51 KATAGSNIKVAAQNMHFEESGAFTGEVSPGMLEAMGIEYVVLGHSERREYFNETDEAINKKVKAAFAHNITPIVCCGETLEQRESGVTNNFIACQIKVDIAGLTKEQAEKVVIAYEPIWAIGTGKTATKEQANETILAIRNVVVEMYGKEVADKVRIQYGGSVKPNTITEQMAMSDIDGALVGGASLKAE 240          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_ALHEH (Triosephosphate isomerase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.214e-36
Identity = 88/178 (49.44%), Postives = 112/178 (62.92%), Query Frame = 3
Query:  135 GAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSW-SNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 662
            GA+TGE++  ML  +    VI+GHSERR +  E++E V DKV  AL  GL  I CVGETLE R+AG T  VV  Q  A+ +        +VLAYEPVWAIGTG+ A+P QAQ VH  +R+        E+A    I+YGGSV   N +EL    DVDG L+GGASL P+ F++II +A
Sbjct:   71 GAYTGEVAGAMLAEMGCRHVIVGHSERRAMHAETDEVVVDKVQAALRAGLTPIVCVGETLEARDAGETEQVVGRQLDAVLELGGFVVEKLVLAYEPVWAIGTGRTASPEQAQAVHAFIRQRAADALGDELAQRLPILYGGSVKPGNARELFGCADVDGGLIGGASLDPDGFLEIISAA 248          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_VIBVY (Triosephosphate isomerase OS=Vibrio vulnificus (strain YJ016) GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.586e-36
Identity = 86/192 (44.79%), Postives = 111/192 (57.81%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAELK 671
            + AQN  +   GAFTG++S  ML +     +I+GHSERR   NES+EFV  K A+    GLK + C+GET  Q EAG T  V A Q  A+ D   V + +  ++AYEP+WAIGTGK AT   AQ +H  +R  + A  +  +A    I YGGSV   N +   AQPD+DG LVGGASL  +    I  A  K
Sbjct:   63 LGAQNTDINNSGAFTGDMSPAMLKDFGATHIIIGHSERREYHNESDEFVAKKFAFLKENGLKPVFCIGETEAQNEAGETEAVCARQINAVIDAYGVEALNGAIIAYEPIWAIGTGKAATAEDAQRIHASIRAMIAAKDA-AVAEQVIIQYGGSVKPENAEAYFAQPDIDGALVGGASLDAKSFAAIAKAAAK 253          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_VIBVU (Triosephosphate isomerase OS=Vibrio vulnificus GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.586e-36
Identity = 86/192 (44.79%), Postives = 111/192 (57.81%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAELK 671
            + AQN  +   GAFTG++S  ML +     +I+GHSERR   NES+EFV  K A+    GLK + C+GET  Q EAG T  V A Q  A+ D   V + +  ++AYEP+WAIGTGK AT   AQ +H  +R  + A  +  +A    I YGGSV   N +   AQPD+DG LVGGASL  +    I  A  K
Sbjct:   63 LGAQNTDINNSGAFTGDMSPAMLKDFGATHIIIGHSERREYHNESDEFVAKKFAFLKENGLKPVFCIGETEAQNEAGETEAVCARQINAVIDAYGVEALNGAIIAYEPIWAIGTGKAATAEDAQRIHASIRAMIAAKDA-AVAEQVIIQYGGSVKPENAEAYFAQPDIDGALVGGASLDAKSFAAIAKAAAK 253          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_SOLUE (Triosephosphate isomerase OS=Solibacter usitatus (strain Ellin6076) GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.586e-36
Identity = 90/180 (50.00%), Postives = 108/180 (60.00%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQ-TKAIADRVSS-WSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP 635
            V AQN    K GAFTGE+S  ML  + +  VI+GHSERR   NE++E V  +   AL  GL  I CVGE L  RE G T  V+A Q  K IA      ++ IV+AYEPVWAIGTGK ATP  A + H  +R  +      E A A RI+YGGSV   N K L  QP++DG LVGGA+L P
Sbjct:   61 VGAQNVGWAKEGAFTGEVSGPMLNAMGVSHVIIGHSERRQYFNETDETVLKRTQAALEFGLTPIVCVGELLADREGGRTEAVLAGQFQKGIAGLTEQQFAKIVIAYEPVWAIGTGKTATPEIAADTHRAIRGQVREKFGKEAADAVRILYGGSVKPDNAKVLMGQPEIDGVLVGGAALDP 240          
The following BLAST results are available for this feature:
BLAST of CX295728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_MYCMO1.214e-3645.73Triosephosphate isomerase OS=Mycoplasma mobile GN=... [more]
TPIS_LYSSC1.214e-3644.28Triosephosphate isomerase OS=Lysinibacillus sphaer... [more]
TPIS_LACS11.214e-3643.75Triosephosphate isomerase OS=Lactobacillus salivar... [more]
TPIS_HERA21.214e-3646.81Triosephosphate isomerase OS=Herpetosiphon auranti... [more]
TPIS_DEHE11.214e-3646.35Triosephosphate isomerase OS=Dehalococcoides ethen... [more]
TPIS_CLOBA1.214e-3646.32Triosephosphate isomerase OS=Clostridium botulinum... [more]
TPIS_ALHEH1.214e-3649.44Triosephosphate isomerase OS=Alkalilimnicola ehrli... [more]
TPIS_VIBVY1.586e-3644.79Triosephosphate isomerase OS=Vibrio vulnificus (st... [more]
TPIS_VIBVU1.586e-3644.79Triosephosphate isomerase OS=Vibrio vulnificus GN=... [more]
TPIS_SOLUE1.586e-3650.00Triosephosphate isomerase OS=Solibacter usitatus (... [more]

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Properties
Property NameValue
Genbank descriptionC05075C06SK DroRLeaf1 Citrus clementina cDNA clone C05075C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295728 ID=CX295728; Name=CX295728; organism=Citrus clementina; type=EST; length=720bp
CTGAAGGTCAAGTTCCATCTTCTGATGTCGTTGAGGTCGTTGTTAGCCCT
CCGTTTGTGTTTCTTGGACTGGTGAAGAGTTCGTTGAGGCCTGATTTTCA
TGTTGCGGCACAGAATTGCTGGGTCAAGAAGGGAGGTGCTTTCACCGGTG
AGATTAGTGCGGAAATGCTCGTCAATTTGGATATTCCTTGGGTCATTCTT
GGTCATTCTGAAAGGAGACTCATTTTGAATGAATCAAATGAGTTTGTTGG
GGATAAGGTTGCATATGCACTTTCTCAAGGTTTGAAGGTGATTGCTTGTG
TTGGTGAGACACTTGAGCAGCGTGAAGCAGGATCTACTATGGATGTTGTT
GCTGCACAAACTAAAGCAATCGCAGATCGAGTCTCAAGCTGGTCAAACAT
TGTTTTGGCCTATGAACCTGTGTGGGCTATTGGAACTGGGAAGGTTGCCA
CTCCAGTGCAGGCTCAAGAAGTACATTTTGAACTGAGGAAATGGCTTTTT
GCAAACACCAGTCCTGAAATTGCTGCAGCAACACGGATCATCTACGGAGG
ATCCGTAAATGGTGCAAACTGCAAGGAATTGGCTGCACAGCCTGATGTTG
ACGGATTTTTGGTTGGTGGTGCTTCGTTGAAGCCGGAGTTCATTGACATC
ATCAAATCTGCTGAGCTGAAGTAAATTCTTGAGCTTTATTTCAGGGCAGT
TTGCTGATGAGTATTACTGT
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