CX295728

Overview
NameCX295728
Unique NameCX295728
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_BDEBA (Triosephosphate isomerase OS=Bdellovibrio bacteriovorus GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.586e-36
Identity = 86/187 (45.99%), Postives = 112/187 (59.89%), Query Frame = 3
Query:  108 AQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVH---FELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 659
            AQNC+ +  GAFTGE SA+++ +L   +V++GHSERR I  E +  V DKVA+    GL  + C+GETL++RE+  T  V+  Q      +      +V+AYEPVWAIGTGKVATP Q  E H   F + K L   T+P       I+YGGSV   N   L  QP V+GFLVGGASL+ +    I S
Sbjct:   61 AQNCYFQAQGAFTGENSAQVVKDLGGSYVLIGHSERRAIFGEGDALVADKVAFVQGLGLTPMLCIGETLQERESAKTFRVLETQLNLGLAKADKTKPVVVAYEPVWAIGTGKVATPEQVAETHTDVFNILKALGFETAP-------ILYGGSVKPDNAAGLIKQPHVNGFLVGGASLEAKSFSEIAS 240          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_RHOPB (Triosephosphate isomerase OS=Rhodopseudomonas palustris (strain BisB18) GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.071e-36
Identity = 87/179 (48.60%), Postives = 110/179 (61.45%), Query Frame = 3
Query:   96 FHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 632
            F + AQ+C  +  GA TG+ISAEML +     VI+GHSERR    ES+  V +K   A   GL  I CVGET  QR+AG T+DVV  Q        ++ +N V+AYEPVWAIGTG+  T    ++VH  +RK L    S E  +  RI+YGGSV  +N +EL A  DV+G LVGGASLK
Sbjct:   68 FAIGAQDCHPRASGAHTGDISAEMLADAGASAVIVGHSERRADHGESDALVREKAEAAWRAGLVAIICVGETQGQRDAGQTLDVVGTQLAGSLPDGATAANTVVAYEPVWAIGTGRTPTVADVEQVHGFIRKSLTQRMSGE-GSKVRILYGGSVKPSNAQELMAVADVNGALVGGASLK 245          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_NITOC (Triosephosphate isomerase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.705e-36
Identity = 88/188 (46.81%), Postives = 116/188 (61.70%), Query Frame = 3
Query:  108 AQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAD--RVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDIIKSA 662
            AQN    + GA+TGEI+  ML +L   +VI+GHSERR +  E++  V +K   A    +  I CVGETL++RE   T  VV  Q  A+ +   V++    V+AYEP+WAIGTG+ ATP QAQEVH  +R  +    S  IA    I+YGGSV G N  EL A PD+DG L+GGASL   EF+ I ++A
Sbjct:   63 AQNLSHHEVGAYTGEIAPSMLADLGCRFVIVGHSERRTLYGETDSLVAEKAIVAQKVNIIPIICVGETLQEREQNITEQVVKRQLNAVLELAGVNALEKAVIAYEPIWAIGTGRTATPEQAQEVHALIRSHVAIQNS-GIAEELLILYGGSVKGNNAAELLAMPDIDGGLIGGASLDAKEFLTICQAA 249          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_CLOBB (Triosephosphate isomerase OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.705e-36
Identity = 87/190 (45.79%), Postives = 113/190 (59.47%), Query Frame = 3
Query:   75 KSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKA-IADRVSSWS-NIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 638
            K++   +  VAAQN   ++ GAFTGE++  ML  + I +V+LGHSERR   NE++E +  KV  A +  +  I C GETLEQRE+G T + +A Q K  IA      +  +V+AYEP+WAIGTGK AT  QA E    +R  +      E+A   RI YGGSV      E  A  D+DG LVGGASLK E
Sbjct:   51 KATAGSNIKVAAQNMHFEESGAFTGEVAPGMLEAMGIEYVVLGHSERREYFNETDEAINKKVKAAFAHNITPIVCCGETLEQRESGVTNNFIACQIKVDIAGLTKEQAEKVVIAYEPIWAIGTGKTATKEQANETILAIRNVVVEMYGKEVADKVRIQYGGSVKPNTITEQMAMSDIDGALVGGASLKAE 240          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_SYMTH (Triosephosphate isomerase OS=Symbiobacterium thermophilum GN=tpiA PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.614e-36
Identity = 89/180 (49.44%), Postives = 109/180 (60.56%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP 635
            + AQN   K  GAFTGE+S  MLV+    +VILGHSERR +  ES+E VG KV  AL  GL  I C+GETLE+++AG    V   Q  A  + ++    +N+V+AYEPVWAIGTG+   P  AQ     +R  +     PE AA  RI YGGSV   N     AQPD+DG LVGGASL P
Sbjct:   61 LGAQNMSDKPSGAFTGEVSGAMLVDAGCRYVILGHSERRRLFGESDEVVGAKVRAALQHGLIPILCIGETLEEQQAGEADAVNRRQLLAGLEGLTPEQVANLVIAYEPVWAIGTGRNCDPGDAQARIAAVRAVVAEAFGPEAAARVRIQYGGSVKPENMAAYMAQPDIDGALVGGASLDP 240          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_LACJO (Triosephosphate isomerase OS=Lactobacillus johnsonii GN=tpiA PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.614e-36
Identity = 85/192 (44.27%), Postives = 120/192 (62.50%), Query Frame = 3
Query:   69 LVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSW--SNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 638
            L K++   + H  A+N + +  GAFTGE S ++L  + I + I+GHSERR   +E++E +  K     + G+  I C GE+LE REA    + V AQ KA  D +++   S +V+AYEP+WAIGTGK A+  QA+E+   +R+ +    + E A   RI YGGSV  AN KEL ++PD+DG LVGGASL PE
Sbjct:   50 LKKTAEGSNLHTGAENAYFEVEGAFTGETSPKVLNEMGIDYCIIGHSERRGYFHETDEDINKKAKALFANGVTPIICCGESLETREANKQDEWVVAQIKAALDGLTAEQVSKLVIAYEPIWAIGTGKTASADQAEEMCKTIRETVKDLYNEETAENVRIQYGGSVKPANVKELMSKPDIDGGLVGGASLDPE 241          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_COXBU (Triosephosphate isomerase OS=Coxiella burnetii GN=tpiA PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.614e-36
Identity = 87/188 (46.28%), Postives = 116/188 (61.70%), Query Frame = 3
Query:   84 LRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIA---DRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 638
            +R      AQ+    + GA+TGE+SA ML +    +VI+GHSERR    E+NE V  KV  AL  G++ I CVGET +QR A  T+ V+  Q   +    D ++S   +V+AYEP+WAIGTGK ATP QA+EVH  LR  L    +  +A +TR++YGGSV   N   L   P++DG LVGGASL+ E
Sbjct:   56 MRTQISWGAQDVSEFERGAYTGEVSAAMLRDFHCRYVIVGHSERRQRHGETNEQVAAKVRAALRCGIRPIICVGETEKQRNANQTLSVIKEQLAVVLQMNDNLASLEGMVVAYEPIWAIGTGKNATPSQAEEVHAALRDQLHRQDA-TLAESTRLLYGGSVKPDNAAALFEMPNIDGALVGGASLEAE 242          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_COXBR (Triosephosphate isomerase OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=tpiA PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.614e-36
Identity = 87/188 (46.28%), Postives = 116/188 (61.70%), Query Frame = 3
Query:   84 LRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIA---DRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 638
            +R      AQ+    + GA+TGE+SA ML +    +VI+GHSERR    E+NE V  KV  AL  G++ I CVGET +QR A  T+ V+  Q   +    D ++S   +V+AYEP+WAIGTGK ATP QA+EVH  LR  L    +  +A +TR++YGGSV   N   L   P++DG LVGGASL+ E
Sbjct:   56 MRTQISWGAQDVSEFERGAYTGEVSAAMLRDFHCRYVIVGHSERRQRHGETNEQVAAKVRAALRCGIRPIICVGETEKQRNANQTLSVIKEQLAVVLQMNDNLASLEGMVVAYEPIWAIGTGKNATPSQAEEVHAALRDQLHRQDA-TLAESTRLLYGGSVKPDNAAALFEMPNIDGALVGGASLEAE 242          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_COXBN (Triosephosphate isomerase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=tpiA PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.614e-36
Identity = 87/188 (46.28%), Postives = 116/188 (61.70%), Query Frame = 3
Query:   84 LRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIA---DRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 638
            +R      AQ+    + GA+TGE+SA ML +    +VI+GHSERR    E+NE V  KV  AL  G++ I CVGET +QR A  T+ V+  Q   +    D ++S   +V+AYEP+WAIGTGK ATP QA+EVH  LR  L    +  +A +TR++YGGSV   N   L   P++DG LVGGASL+ E
Sbjct:   56 MRTQISWGAQDVSEFERGAYTGEVSAAMLRDFHCRYVIVGHSERRQRHGETNEQVAAKVRAALRCGIRPIICVGETEKQRNANQTLSVIKEQLAVVLQMNDNLASLEGMVVAYEPIWAIGTGKNATPSQAEEVHAALRDQLHRQDA-TLAESTRLLYGGSVKPDNAAALFEMPNIDGALVGGASLEAE 242          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_ACIB3 (Triosephosphate isomerase OS=Acinetobacter baumannii (strain AB307-0294) GN=tpiA PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.614e-36
Identity = 91/200 (45.50%), Postives = 126/200 (63.00%), Query Frame = 3
Query:   72 VKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSN-IVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKS 659
            ++ + R  + VA     V   GA+TGE+SAE+L +  I +V++GHSERR I  ++ E +  K+  AL+ G+ VI CVGE+LEQRE G    VV  Q   IA  V++  W N +V+AYEP+WAIGTGK A+P  AQ +H ++R+ L   TS    +   I+YGGSV   N  ELAA PD++G LVGGASL    F  I+++
Sbjct:   62 LQDAARTVYTVAQDVSRVAGTGAYTGEVSAELLKDSQINFVLVGHSERRDIFGDNVEILKAKLQNALNAGMTVIYCVGESLEQREQGQAEQVVLQQICDIAPVVTAEQWQNQVVIAYEPIWAIGTGKTASPQDAQAMHAKIREGLCQLTS--AGSNIAILYGGSVKAENAVELAACPDINGALVGGASLNAASFYQIVQA 259          
The following BLAST results are available for this feature:
BLAST of CX295728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_BDEBA1.586e-3645.99Triosephosphate isomerase OS=Bdellovibrio bacterio... [more]
TPIS_RHOPB2.071e-3648.60Triosephosphate isomerase OS=Rhodopseudomonas palu... [more]
TPIS_NITOC2.705e-3646.81Triosephosphate isomerase OS=Nitrosococcus oceani ... [more]
TPIS_CLOBB2.705e-3645.79Triosephosphate isomerase OS=Clostridium botulinum... [more]
TPIS_SYMTH4.614e-3649.44Triosephosphate isomerase OS=Symbiobacterium therm... [more]
TPIS_LACJO4.614e-3644.27Triosephosphate isomerase OS=Lactobacillus johnson... [more]
TPIS_COXBU4.614e-3646.28Triosephosphate isomerase OS=Coxiella burnetii GN=... [more]
TPIS_COXBR4.614e-3646.28Triosephosphate isomerase OS=Coxiella burnetii (st... [more]
TPIS_COXBN4.614e-3646.28Triosephosphate isomerase OS=Coxiella burnetii (st... [more]
TPIS_ACIB34.614e-3645.50Triosephosphate isomerase OS=Acinetobacter baumann... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05075C06SK DroRLeaf1 Citrus clementina cDNA clone C05075C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295728 ID=CX295728; Name=CX295728; organism=Citrus clementina; type=EST; length=720bp
CTGAAGGTCAAGTTCCATCTTCTGATGTCGTTGAGGTCGTTGTTAGCCCT
CCGTTTGTGTTTCTTGGACTGGTGAAGAGTTCGTTGAGGCCTGATTTTCA
TGTTGCGGCACAGAATTGCTGGGTCAAGAAGGGAGGTGCTTTCACCGGTG
AGATTAGTGCGGAAATGCTCGTCAATTTGGATATTCCTTGGGTCATTCTT
GGTCATTCTGAAAGGAGACTCATTTTGAATGAATCAAATGAGTTTGTTGG
GGATAAGGTTGCATATGCACTTTCTCAAGGTTTGAAGGTGATTGCTTGTG
TTGGTGAGACACTTGAGCAGCGTGAAGCAGGATCTACTATGGATGTTGTT
GCTGCACAAACTAAAGCAATCGCAGATCGAGTCTCAAGCTGGTCAAACAT
TGTTTTGGCCTATGAACCTGTGTGGGCTATTGGAACTGGGAAGGTTGCCA
CTCCAGTGCAGGCTCAAGAAGTACATTTTGAACTGAGGAAATGGCTTTTT
GCAAACACCAGTCCTGAAATTGCTGCAGCAACACGGATCATCTACGGAGG
ATCCGTAAATGGTGCAAACTGCAAGGAATTGGCTGCACAGCCTGATGTTG
ACGGATTTTTGGTTGGTGGTGCTTCGTTGAAGCCGGAGTTCATTGACATC
ATCAAATCTGCTGAGCTGAAGTAAATTCTTGAGCTTTATTTCAGGGCAGT
TTGCTGATGAGTATTACTGT
back to top