CX295728

Overview
NameCX295728
Unique NameCX295728
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_STREM (Triosephosphate isomerase OS=Streptococcus equi subsp. zooepidemicus (strain MGCS10565) GN=tpiA PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.025e-36
Identity = 82/181 (45.30%), Postives = 114/181 (62.98%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSW--SNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 638
            VAAQNC+ +  GA+TGE S ++L ++   +V++GHSERR   +E++E +  K     + GL  I C GE+LE  EAG  +  V AQ  A  + +S+   +++VLAYEP+WAIGTGK AT   AQ +   +R  + A+   E+A   R+ YGGSV   N KE  A PDVDG LVGGASL+ +
Sbjct:   62 VAAQNCYFENSGAYTGETSPKVLADMGADYVVIGHSERRDYFHETDEDINKKAKAIFANGLTPIICCGESLETYEAGQAVAFVGAQVSAALEGLSAEQVASLVLAYEPIWAIGTGKSATQEDAQSMCKAVRDVVAADFGQEVADKVRVQYGGSVKPENIKEYMACPDVDGALVGGASLEAD 242          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_BORBZ (Triosephosphate isomerase OS=Borrelia burgdorferi (strain ZS7) GN=tpiA PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.025e-36
Identity = 89/190 (46.84%), Postives = 118/190 (62.11%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLK-VIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKS 659
            + AQN    + GA T EIS  ML+   + +VILGHSE RL L E++E +  K+   L    K +I CVGETL++R++G T++VV  Q K   + V  S    I+LAYEPVWAIGTGK AT  +A+EVH  +R  +    S   +    I YGGSVN  N KEL  +P++DG L+GGASLK E F+ II +
Sbjct:   62 LGAQNMSYMESGARTSEISPSMLLEFGVEYVILGHSECRLYLAETDEIINKKILAGLKHPFKYLILCVGETLDERDSGKTLEVVLNQVKKGLNCVSESDIQRIILAYEPVWAIGTGKTATKEEAEEVHKAIRLEITKLYSKSASDNIIIQYGGSVNSNNVKELMNEPNIDGALIGGASLKAESFLSIINN 251          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_BORBU (Triosephosphate isomerase OS=Borrelia burgdorferi GN=tpiA PE=3 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 6.025e-36
Identity = 89/190 (46.84%), Postives = 118/190 (62.11%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLK-VIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKS 659
            + AQN    + GA T EIS  ML+   + +VILGHSE RL L E++E +  K+   L    K +I CVGETL++R++G T++VV  Q K   + V  S    I+LAYEPVWAIGTGK AT  +A+EVH  +R  +    S   +    I YGGSVN  N KEL  +P++DG L+GGASLK E F+ II +
Sbjct:   62 LGAQNMSYMESGARTSEISPSMLLEFGVEYVILGHSECRLYLAETDEIINKKILAGLKHPFKYLILCVGETLDERDSGKTLEVVLNQVKKGLNCVSESDIQRIILAYEPVWAIGTGKTATKEEAEEVHKAIRLEITKLYSKSASDNIIIQYGGSVNSNNVKELMNEPNIDGALIGGASLKAESFLSIINN 251          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_ACIBY (Triosephosphate isomerase OS=Acinetobacter baumannii (strain AYE) GN=tpiA PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.025e-36
Identity = 91/192 (47.40%), Postives = 123/192 (64.06%), Query Frame = 3
Query:   99 HVAAQNCWVKKG-GAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSN-IVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKS 659
            H  AQ+     G GA+TGE+SAE+L +  I +V++GHSERR I  ++ E +  K+  AL+ G+ VI CVGE+LEQRE G    VV  Q   IA  V++  W N +V+AYEP+WAIGTGK A+P  AQ +H ++R+ L   T     +   I+YGGSV   N  ELAA PD++G LVGGASLK   F  I+++
Sbjct:   70 HTVAQDVSRVAGTGAYTGEVSAELLKDSQINFVLVGHSERRDIFGDNVEILKAKLQNALNAGMTVIYCVGESLEQREQGQAEQVVLQQICDIAPVVTAEQWQNQVVIAYEPIWAIGTGKTASPQDAQAMHAKIREGLCQLT--PAGSNIAILYGGSVKAENAVELAACPDINGALVGGASLKAASFYQIVQA 259          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_ACIB5 (Triosephosphate isomerase OS=Acinetobacter baumannii (strain AB0057) GN=tpiA PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.025e-36
Identity = 91/192 (47.40%), Postives = 123/192 (64.06%), Query Frame = 3
Query:   99 HVAAQNCWVKKG-GAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSN-IVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKS 659
            H  AQ+     G GA+TGE+SAE+L +  I +V++GHSERR I  ++ E +  K+  AL+ G+ VI CVGE+LEQRE G    VV  Q   IA  V++  W N +V+AYEP+WAIGTGK A+P  AQ +H ++R+ L   T     +   I+YGGSV   N  ELAA PD++G LVGGASLK   F  I+++
Sbjct:   70 HTVAQDVSRVAGTGAYTGEVSAELLKDSQINFVLVGHSERRDIFGDNVEILKAKLQNALNAGMTVIYCVGESLEQREQGQAEQVVLQQICDIAPVVTAEQWQNQVVIAYEPIWAIGTGKTASPQDAQAMHAKIREGLCQLT--PAGSNIAILYGGSVKAENAVELAACPDINGALVGGASLKAASFYQIVQA 259          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_MYCS5 (Triosephosphate isomerase OS=Mycoplasma synoviae (strain 53) GN=tpiA PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.870e-36
Identity = 90/185 (48.65%), Postives = 123/185 (66.49%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDII 653
            +AAQN    + GA+TGE+SA+ML++L++ +VILGHSE+R    E++E V  K   AL + L  I CVGETLE+  AG T +VV AQ  A    +   + +++AYEP+WAIGTGKVAT   AQ+V     K++   TS +    T + YGGSVN  N  EL++Q D+DGFLVGGASLK  +F D++
Sbjct:   64 LAAQNMSFYEKGAYTGEVSADMLLDLNVSYVILGHSEQRQYHAETDENVNKKARLALEKNLTPIVCVGETLEEYLAGKTKEVVKAQLAASLKDLDV-TKVIVAYEPIWAIGTGKVATAQIAQDV----CKYIKELTSKQ----TVVQYGGSVNAKNIFELSSQEDIDGFLVGGASLKATDFSDLM 239          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_DICT6 (Triosephosphate isomerase OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=tpiA PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.870e-36
Identity = 87/189 (46.03%), Postives = 118/189 (62.43%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKS 659
            + AQN + +K GA+TGEIS  ML +L+  +VI+GHSERR   +E+NE +  K+  A + GL  I CVGE  E+RE G T +V+  Q +   + +   +   IV+AYEPVWAIGTG  A    A EV   +RK +      E++   RI YGGSVN  N  E  +Q ++DG LVGGASLKP+ F +I+KS
Sbjct:   61 LGAQNMFWEKEGAYTGEISPIMLKDLNCTYVIIGHSERRNYFSETNEMINKKIKSAFNYGLIPIFCVGEKWEERERGKTEEVITKQVREGLEGLEKENVEKIVIAYEPVWAIGTGHSAKGEDANEVAGLIRKIISEMYDTEVSQKIRIQYGGSVNPQNITEFLSQNEIDGALVGGASLKPQSFWNIVKS 249          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_CHLFF (Triosephosphate isomerase OS=Chlamydophila felis (strain Fe/C-56) GN=tpiA PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.870e-36
Identity = 83/190 (43.68%), Postives = 115/190 (60.53%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAEL 668
            + AQN      GAFTGE+S  ML    + +V+LGHSE R I +E +  +  KV  A   G+  + C+GETLE RE+G+T DV++ Q      ++   +++++AYEPVWAIGTGKVA+    QEVH   R+ L    S E +    I+YGGSV   N +  A  PDVDG LVGGASL P+ F +++ +  L
Sbjct:   65 LGAQNVHQDSSGAFTGEVSLPMLQEFHVNFVLLGHSECRHIFHEEDSTIALKVGAAARSGVVPVLCIGETLETRESGTTKDVLSNQLILGLAQLPETASVIIAYEPVWAIGTGKVASTADVQEVHAFCREVLSRIFSKEKSETISILYGGSVKADNAEGFARCPDVDGLLVGGASLDPQVFANVVGNFNL 254          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_ALISL (Triosephosphate isomerase OS=Aliivibrio salmonicida (strain LFI1238) GN=tpiA PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.870e-36
Identity = 85/192 (44.27%), Postives = 111/192 (57.81%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAELK 671
            + AQN  +   GAFTG++S  ML       +I+GHSERR   NES+EFV  K A+    GL  + C+GE+  Q EAG TM V A Q  A+ +   V +    ++AYEP+WAIGTGK AT   AQ +H ++R  + A  S E+A    I YGGSV   N +   AQPD+DG LVGGA+L  +    I  A  K
Sbjct:   63 LGAQNSDLNNSGAFTGDMSPAMLKEFGATHIIIGHSERREYHNESDEFVAKKFAFLKENGLTPVLCIGESDAQNEAGETMAVCARQLDAVINTQGVEALEGAIIAYEPIWAIGTGKAATAEDAQRIHAQIRAHI-AEKSEEVAKNVVIQYGGSVKPENAEAYFAQPDIDGALVGGAALDAKSFAAIAKAAAK 253          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_ACIAD (Triosephosphate isomerase OS=Acinetobacter sp. (strain ADP1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.870e-36
Identity = 84/171 (49.12%), Postives = 115/171 (67.25%), Query Frame = 3
Query:  135 GAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSN-IVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 638
            GA+TGEISAE+L +  I +V++GHSERR +L +  E +  K+++AL+ G+ VI CVGE+LEQRE G    +V  Q   IA  VS+  W + IV+AYEP+WAIGTG+ A+P  AQ +H ++R+ L   T     +   ++YGGSV   N  ELAA PD++G LVGGASL  E
Sbjct:   83 GAYTGEISAELLTDSQIRYVLIGHSERRDLLGDHVEILKAKLSHALNAGMTVIYCVGESLEQREQGLAEQIVLQQICDIAPVVSAEQWQHQIVIAYEPIWAIGTGRTASPEDAQAIHAKIREGLCQIT--PAGSQIALLYGGSVKPENAVELAACPDINGALVGGASLNAE 251          
The following BLAST results are available for this feature:
BLAST of CX295728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_STREM6.025e-3645.30Triosephosphate isomerase OS=Streptococcus equi su... [more]
TPIS_BORBZ6.025e-3646.84Triosephosphate isomerase OS=Borrelia burgdorferi ... [more]
TPIS_BORBU6.025e-3646.84Triosephosphate isomerase OS=Borrelia burgdorferi ... [more]
TPIS_ACIBY6.025e-3647.40Triosephosphate isomerase OS=Acinetobacter baumann... [more]
TPIS_ACIB56.025e-3647.40Triosephosphate isomerase OS=Acinetobacter baumann... [more]
TPIS_MYCS57.870e-3648.65Triosephosphate isomerase OS=Mycoplasma synoviae (... [more]
TPIS_DICT67.870e-3646.03Triosephosphate isomerase OS=Dictyoglomus thermoph... [more]
TPIS_CHLFF7.870e-3643.68Triosephosphate isomerase OS=Chlamydophila felis (... [more]
TPIS_ALISL7.870e-3644.27Triosephosphate isomerase OS=Aliivibrio salmonicid... [more]
TPIS_ACIAD7.870e-3649.12Triosephosphate isomerase OS=Acinetobacter sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionC05075C06SK DroRLeaf1 Citrus clementina cDNA clone C05075C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295728 ID=CX295728; Name=CX295728; organism=Citrus clementina; type=EST; length=720bp
CTGAAGGTCAAGTTCCATCTTCTGATGTCGTTGAGGTCGTTGTTAGCCCT
CCGTTTGTGTTTCTTGGACTGGTGAAGAGTTCGTTGAGGCCTGATTTTCA
TGTTGCGGCACAGAATTGCTGGGTCAAGAAGGGAGGTGCTTTCACCGGTG
AGATTAGTGCGGAAATGCTCGTCAATTTGGATATTCCTTGGGTCATTCTT
GGTCATTCTGAAAGGAGACTCATTTTGAATGAATCAAATGAGTTTGTTGG
GGATAAGGTTGCATATGCACTTTCTCAAGGTTTGAAGGTGATTGCTTGTG
TTGGTGAGACACTTGAGCAGCGTGAAGCAGGATCTACTATGGATGTTGTT
GCTGCACAAACTAAAGCAATCGCAGATCGAGTCTCAAGCTGGTCAAACAT
TGTTTTGGCCTATGAACCTGTGTGGGCTATTGGAACTGGGAAGGTTGCCA
CTCCAGTGCAGGCTCAAGAAGTACATTTTGAACTGAGGAAATGGCTTTTT
GCAAACACCAGTCCTGAAATTGCTGCAGCAACACGGATCATCTACGGAGG
ATCCGTAAATGGTGCAAACTGCAAGGAATTGGCTGCACAGCCTGATGTTG
ACGGATTTTTGGTTGGTGGTGCTTCGTTGAAGCCGGAGTTCATTGACATC
ATCAAATCTGCTGAGCTGAAGTAAATTCTTGAGCTTTATTTCAGGGCAGT
TTGCTGATGAGTATTACTGT
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