CX295728

Overview
NameCX295728
Unique NameCX295728
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_STRP3 (Triosephosphate isomerase OS=Streptococcus pyogenes serotype M3 GN=tpiA PE=3 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.342e-35
Identity = 82/181 (45.30%), Postives = 113/181 (62.43%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSW--SNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 638
            VAAQNC+ +  GAFTGE S ++L  +   +V++GHSERR   +E++E +  K     + GL  I C GE+LE  EAG  ++ V AQ  A    +S+   +++VLAYEP+WAIGTGK AT   AQ +   +R  + A+   E+A   R+ YGGSV   N K+  A PDVDG LVGGASL+ +
Sbjct:   62 VAAQNCYFENTGAFTGETSPKVLAEMGADYVVIGHSERRDYFHETDEDINKKAKAIFANGLTPIVCCGESLETYEAGKAVEFVGAQVSAALAGLSAEQVASLVLAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQEVADKVRVQYGGSVKPENVKDYMACPDVDGALVGGASLEAD 242          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_STRP1 (Triosephosphate isomerase OS=Streptococcus pyogenes serotype M1 GN=tpiA PE=3 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.342e-35
Identity = 82/181 (45.30%), Postives = 113/181 (62.43%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSW--SNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 638
            VAAQNC+ +  GAFTGE S ++L  +   +V++GHSERR   +E++E +  K     + GL  I C GE+LE  EAG  ++ V AQ  A    +S+   +++VLAYEP+WAIGTGK AT   AQ +   +R  + A+   E+A   R+ YGGSV   N K+  A PDVDG LVGGASL+ +
Sbjct:   62 VAAQNCYFENTGAFTGETSPKVLAEMGADYVVIGHSERRDYFHETDEDINKKAKAIFANGLTPIVCCGESLETYEAGKAVEFVGAQVSAALAGLSAEQVASLVLAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQEVADKVRVQYGGSVKPENVKDYMACPDVDGALVGGASLEAD 242          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_MOOTA (Triosephosphate isomerase OS=Moorella thermoacetica (strain ATCC 39073) GN=tpiA PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.342e-35
Identity = 90/188 (47.87%), Postives = 115/188 (61.17%), Query Frame = 3
Query:   72 VKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWS--NIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 629
            V ++   +  V AQ+ + +  GA+TGE+S  ML +L   +VI+GHSERR    E++  V  K+  A    L  I CVGETL +REAG T++VV  Q +     + +    ++V+AYEPVWAIGTGK AT   AQEV   +RK L      E AAA RI YGGSV   N  EL AQPD+DG LVGGASL
Sbjct:   50 VNAASGSNISVGAQDLFWEDKGAYTGEVSGPMLRDLGCRYVIIGHSERRQYFGETDATVNKKLLAAYRNELLPIVCVGETLAEREAGHTLEVVGRQVREGLKGLETGQARDLVVAYEPVWAIGTGKTATAADAQEVIAFIRKTL-GEMYGETAAAIRIQYGGSVKPENIAELMAQPDIDGALVGGASL 236          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_GEOTN (Triosephosphate isomerase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=tpiA PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.342e-35
Identity = 90/200 (45.00%), Postives = 120/200 (60.00%), Query Frame = 3
Query:   69 LVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQT-KAIADRV-SSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDIIKS 659
            LV+++   D  + AQ       GA+TGE+S  ML +L + +VILGHSERR +  E++E V  KV  A ++GL  I C GETLE+REAG T  VVA+Q  KA+A          V+AYEP+WAIGTGK +T   A  V   +R  +      E A A RI YGGSV   N  +  AQ  +DG LVGGASL+P  F+ ++++
Sbjct:   50 LVQNTNGTDLQIGAQTMHFADQGAYTGEVSPVMLKDLGVTYVILGHSERRQMFAETDETVNKKVLAAFTRGLVPIICCGETLEEREAGQTNAVVASQVEKALAGLTPDQVKQAVIAYEPIWAIGTGKSSTAEDANNVCGHIRSVVARLFGAEAAEAIRIQYGGSVKPENISDFLAQEHIDGALVGGASLEPASFLKLVEA 249          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_BIFLO (Triosephosphate isomerase OS=Bifidobacterium longum GN=tpiA PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.342e-35
Identity = 83/195 (42.56%), Postives = 119/195 (61.03%), Query Frame = 3
Query:   99 HVA--AQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSW--SNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAELK 671
            HVA  AQ+  V   GAFTG++SA+M+ +L   +VI+GHSERR    E +  + D+V   L+ G++ I CVGE+ E+R  G  +D    Q + +   ++    + +++AYEPVWAIGTG VATP  AQ+    +R  L      +++ + RI+YGGSV   N  EL +QPDVDGFL+GGA+L  E +  I    LK
Sbjct:   67 HVAYGAQSVSVTTQGAFTGDVSADMIAHLGCSYVIVGHSERRKYHPEDDANIVDQVRAVLAAGMQPILCVGESFEERRQGIELDFAVGQVRDVTRDLNEEQAAKLIVAYEPVWAIGTGMVATPQSAQDAANAIRNDLKTTFGTKVSDSVRILYGGSVTSKNAAELISQPDVDGFLIGGAALDVEELAKIARLALK 261          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_BIFLD (Triosephosphate isomerase OS=Bifidobacterium longum (strain DJO10A) GN=tpiA PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.342e-35
Identity = 83/195 (42.56%), Postives = 119/195 (61.03%), Query Frame = 3
Query:   99 HVA--AQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSW--SNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAELK 671
            HVA  AQ+  V   GAFTG++SA+M+ +L   +VI+GHSERR    E +  + D+V   L+ G++ I CVGE+ E+R  G  +D    Q + +   ++    + +++AYEPVWAIGTG VATP  AQ+    +R  L      +++ + RI+YGGSV   N  EL +QPDVDGFL+GGA+L  E +  I    LK
Sbjct:   67 HVAYGAQSVSVTTQGAFTGDVSADMIAHLGCSYVIVGHSERRKYHPEDDANIVDQVRAVLAAGMQPILCVGESFEERRQGIELDFAVGQVRDVTRDLNEEQAAKLIVAYEPVWAIGTGMVATPQSAQDAANAIRNDLKTTFGTKVSDSVRILYGGSVTSKNAAELISQPDVDGFLIGGAALDVEELAKIARLALK 261          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_STRPG (Triosephosphate isomerase OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=tpiA PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.753e-35
Identity = 82/179 (45.81%), Postives = 112/179 (62.57%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSW--SNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 632
            VAAQNC+ +  GAFTGE S ++L  +   +V++GHSERR   +E++E +  K     + GL  I C GE+LE  EAG  ++ V AQ  A    +S+   +++VLAYEP+WAIGTGK AT   AQ +   +R  + A+   E+A   R+ YGGSV   N K+  A PDVDG LVGGASL+
Sbjct:   62 VAAQNCYFENTGAFTGETSPKVLAEMGADYVVIGHSERRDYFHETDEDINKKAKAIFANGLTPIVCCGESLETYEAGKAVEFVGAQVSAALAGLSAEQVASLVLAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQEVADKVRVQYGGSVKPENVKDYMACPDVDGALVGGASLE 240          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_STRP6 (Triosephosphate isomerase OS=Streptococcus pyogenes serotype M6 GN=tpiA PE=1 SV=3)

HSP 1 Score: 149.443 bits (376), Expect = 1.753e-35
Identity = 82/179 (45.81%), Postives = 112/179 (62.57%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSW--SNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 632
            VAAQNC+ +  GAFTGE S ++L  +   +V++GHSERR   +E++E +  K     + GL  I C GE+LE  EAG  ++ V AQ  A    +S+   +++VLAYEP+WAIGTGK AT   AQ +   +R  + A+   E+A   R+ YGGSV   N K+  A PDVDG LVGGASL+
Sbjct:   62 VAAQNCYFENTGAFTGETSPKVLAEMGADYVVIGHSERRDYFHETDEDINKKAKAIFANGLTPIVCCGESLETYEAGKAVEFVGAQVSAALAGLSAEQVASLVLAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQEVADKVRVQYGGSVKPENVKDYMACPDVDGALVGGASLE 240          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_DECAR (Triosephosphate isomerase OS=Dechloromonas aromatica (strain RCB) GN=tpiA PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.753e-35
Identity = 90/205 (43.90%), Postives = 124/205 (60.49%), Query Frame = 3
Query:   60 FLGLVKSSLRPDFHV-AAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDIIKSA 662
            +LG V+S L        AQ+    + GAFTGE++A ML+     +V++GHSERR +  E++  V  K       GL  + CVGETL +RE+G T  VVA Q  A+  R  V++ ++ V+AYEPVWAIGTG  A+P QAQEVH  +R  + A     +A   RI+YGGSV   N  EL  Q D+DG L+GGA+L   +F+ I ++A
Sbjct:   45 YLGQVQSILSGSALAWGAQSVSEHQSGAFTGEVAASMLLEFGCRYVLVGHSERRALYGETDTVVSAKFEAVQRAGLVPVLCVGETLAERESGMTSVVVARQLSAVLGRVGVAAMASAVVAYEPVWAIGTGVTASPAQAQEVHAAIRAKV-AELDLGVANGLRILYGGSVKPQNAMELFGQDDIDGGLIGGAALVADDFLAICRAA 248          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_ACIBT (Triosephosphate isomerase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=tpiA PE=3 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.753e-35
Identity = 90/200 (45.00%), Postives = 125/200 (62.50%), Query Frame = 3
Query:   72 VKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSN-IVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKS 659
            ++ + R  + VA     V   GA+TGE+SAE+L +  I +V++GHSERR I  ++ E +  K+  AL+ G+ VI CVGE+LEQRE G    VV  Q   IA  V++  W N +V+AYEP+WAIGTGK A+P  AQ +H ++R+ L   T     +   I+YGGSV   N  ELAA PD++G LVGGASL    F  I+++
Sbjct:   62 LQDAARTVYTVAQDVSRVAGTGAYTGEVSAELLKDSQINFVLVGHSERRDIFGDNVEILKAKLQNALNAGMTVIYCVGESLEQREQGQAEQVVLQQICDIAPVVTAEQWQNQVVIAYEPIWAIGTGKTASPQDAQAMHAKIREGLCQLT--PAGSNIAILYGGSVKAENAVELAACPDINGALVGGASLNAASFYQIVQA 259          
The following BLAST results are available for this feature:
BLAST of CX295728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_STRP31.342e-3545.30Triosephosphate isomerase OS=Streptococcus pyogene... [more]
TPIS_STRP11.342e-3545.30Triosephosphate isomerase OS=Streptococcus pyogene... [more]
TPIS_MOOTA1.342e-3547.87Triosephosphate isomerase OS=Moorella thermoacetic... [more]
TPIS_GEOTN1.342e-3545.00Triosephosphate isomerase OS=Geobacillus thermoden... [more]
TPIS_BIFLO1.342e-3542.56Triosephosphate isomerase OS=Bifidobacterium longu... [more]
TPIS_BIFLD1.342e-3542.56Triosephosphate isomerase OS=Bifidobacterium longu... [more]
TPIS_STRPG1.753e-3545.81Triosephosphate isomerase OS=Streptococcus pyogene... [more]
TPIS_STRP61.753e-3545.81Triosephosphate isomerase OS=Streptococcus pyogene... [more]
TPIS_DECAR1.753e-3543.90Triosephosphate isomerase OS=Dechloromonas aromati... [more]
TPIS_ACIBT1.753e-3545.00Triosephosphate isomerase OS=Acinetobacter baumann... [more]

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Properties
Property NameValue
Genbank descriptionC05075C06SK DroRLeaf1 Citrus clementina cDNA clone C05075C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295728 ID=CX295728; Name=CX295728; organism=Citrus clementina; type=EST; length=720bp
CTGAAGGTCAAGTTCCATCTTCTGATGTCGTTGAGGTCGTTGTTAGCCCT
CCGTTTGTGTTTCTTGGACTGGTGAAGAGTTCGTTGAGGCCTGATTTTCA
TGTTGCGGCACAGAATTGCTGGGTCAAGAAGGGAGGTGCTTTCACCGGTG
AGATTAGTGCGGAAATGCTCGTCAATTTGGATATTCCTTGGGTCATTCTT
GGTCATTCTGAAAGGAGACTCATTTTGAATGAATCAAATGAGTTTGTTGG
GGATAAGGTTGCATATGCACTTTCTCAAGGTTTGAAGGTGATTGCTTGTG
TTGGTGAGACACTTGAGCAGCGTGAAGCAGGATCTACTATGGATGTTGTT
GCTGCACAAACTAAAGCAATCGCAGATCGAGTCTCAAGCTGGTCAAACAT
TGTTTTGGCCTATGAACCTGTGTGGGCTATTGGAACTGGGAAGGTTGCCA
CTCCAGTGCAGGCTCAAGAAGTACATTTTGAACTGAGGAAATGGCTTTTT
GCAAACACCAGTCCTGAAATTGCTGCAGCAACACGGATCATCTACGGAGG
ATCCGTAAATGGTGCAAACTGCAAGGAATTGGCTGCACAGCCTGATGTTG
ACGGATTTTTGGTTGGTGGTGCTTCGTTGAAGCCGGAGTTCATTGACATC
ATCAAATCTGCTGAGCTGAAGTAAATTCTTGAGCTTTATTTCAGGGCAGT
TTGCTGATGAGTATTACTGT
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