CX295728

Overview
NameCX295728
Unique NameCX295728
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_ACIBS (Triosephosphate isomerase OS=Acinetobacter baumannii (strain SDF) GN=tpiA PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.753e-35
Identity = 90/200 (45.00%), Postives = 125/200 (62.50%), Query Frame = 3
Query:   72 VKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSN-IVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKS 659
            ++ + R  + VA     V   GA+TGE+SAE+L +  I +V++GHSERR I  ++ E +  K+  AL+ G+ VI CVGE+LEQRE G    VV  Q   IA  V++  W N +V+AYEP+WAIGTGK A+P  AQ +H ++R+ L   T     +   I+YGGSV   N  ELAA PD++G LVGGASL    F  I+++
Sbjct:   62 LQDAARTVYTVAQDVSRVAGTGAYTGEVSAELLKDSQINFVLVGHSERRDIFGDNVEILKAKLQNALNAGMTVIYCVGESLEQREQGQAEQVVLQQICDIAPVVTAEQWQNQVVIAYEPIWAIGTGKTASPQDAQAMHAKIREGLCQLT--PAGSNIAILYGGSVKAENAVELAACPDINGALVGGASLNAASFYQIVQA 259          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_ACIBC (Triosephosphate isomerase OS=Acinetobacter baumannii (strain ACICU) GN=tpiA PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.753e-35
Identity = 90/200 (45.00%), Postives = 125/200 (62.50%), Query Frame = 3
Query:   72 VKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSN-IVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKS 659
            ++ + R  + VA     V   GA+TGE+SAE+L +  I +V++GHSERR I  ++ E +  K+  AL+ G+ VI CVGE+LEQRE G    VV  Q   IA  V++  W N +V+AYEP+WAIGTGK A+P  AQ +H ++R+ L   T     +   I+YGGSV   N  ELAA PD++G LVGGASL    F  I+++
Sbjct:   62 LQDAARTVYTVAQDVSRVAGTGAYTGEVSAELLKDSQINFVLVGHSERRDIFGDNVEILKAKLQNALNAGMTVIYCVGESLEQREQGQAEQVVLQQICDIAPVVTAEQWQNQVVIAYEPIWAIGTGKTASPQDAQAMHAKIREGLCQLT--PAGSNIAILYGGSVKAENAVELAACPDINGALVGGASLNAASFYQIVQA 259          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_DICTD (Triosephosphate isomerase OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=tpiA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.290e-35
Identity = 87/189 (46.03%), Postives = 115/189 (60.85%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWS--NIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKS 659
            + AQN + +K GA+TGEIS  ML +L+  +VI+GHSERR   +E+N+ +  K+  A    L  I CVGE  E+RE G T +V+  Q K     +       IV+AYEPVWAIGTG  A    A EV   +R+ +      E++   RI YGGSVN  N KE  AQ ++DG LVGGASLKP+ F DI++S
Sbjct:   61 LGAQNMFWEKEGAYTGEISPIMLKDLNCSYVIIGHSERRQYFSETNDMINKKLKSAFEYELIPIFCVGEKWEEREKGKTEEVITEQVKKGLQGLEKEKVEKIVIAYEPVWAIGTGHSAKGEDANEVAKLIRRIISEIYDEEVSQKVRIQYGGSVNPQNIKEFLAQSEIDGALVGGASLKPQSFWDIVRS 249          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_CUPTR (Triosephosphate isomerase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=tpiA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.290e-35
Identity = 86/179 (48.04%), Postives = 109/179 (60.89%), Query Frame = 3
Query:  108 AQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAD--RVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 638
            AQ+   +  GAFTGE++A ML      +V++GHSERR    E+++ V  K   AL  G+  + CVGETL QREAG T  VV  Q +A+ +   V     +VLAYEPVWAIGTGK AT  QAQ VH  LR  + A  +  +A    I+YGGSV   N  EL +  D+DG L+GGASLK E
Sbjct:   62 AQDVSAEARGAFTGEVAASMLGEFGCTYVLVGHSERRTYHGETDQAVAAKALRALEFGIVPVVCVGETLAQREAGETEAVVGRQLQAVLEALTVEQLGRVVLAYEPVWAIGTGKTATSEQAQAVHAFLRGQVAARDA-GVAGRMAILYGGSVKPDNAAELFSMTDIDGGLIGGASLKSE 239          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_CLOAB (Triosephosphate isomerase OS=Clostridium acetobutylicum GN=tpiA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.290e-35
Identity = 86/190 (45.26%), Postives = 114/190 (60.00%), Query Frame = 3
Query:   69 LVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 632
            +V ++   +  VAAQN   ++ GAFTGEIS + L  L + +VILGHSERR   NE++  +  KV  A +  +  I C GETLE+REA  T +V   Q K     +S+   + +V+AYEP+WAIGTGK AT  QA E    +RK +      E+A   RI YGGSV     K   A+P++DG LVGGASLK
Sbjct:   49 VVNATKGSNIKVAAQNAHFEESGAFTGEISLKALEELGVSYVILGHSERRQYFNETDCALNKKVKAAFAHNITPILCCGETLEEREANVTNEVTGKQIKLDLAGLSAEQAAKVVIAYEPIWAIGTGKTATDEQANETIGAIRKTVEVMFGKEVAEKVRIQYGGSVKPNTIKAQMAKPEIDGALVGGASLK 238          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_VIBPA (Triosephosphate isomerase OS=Vibrio parahaemolyticus GN=tpiA PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.990e-35
Identity = 85/190 (44.74%), Postives = 112/190 (58.95%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 662
            + AQN  +   GAFTG++S EML +     +I+GHSERR   NES+EF+  K  +    GL  + C+GE+  Q EAG T  V A Q  A+ D   V + +  ++AYEP+WAIGTGK AT   AQ +H  +R  L A     +AA   I YGGSV   N +   +QPD+DG LVGGASL  + F  I K+A
Sbjct:   63 LGAQNTDLNNSGAFTGDMSPEMLKDFGATHIIIGHSERREYHNESDEFIAKKFNFLKENGLTPVFCIGESEAQNEAGETEAVCARQINAVIDTYGVEALNGAIIAYEPIWAIGTGKAATAEDAQRIHASIRA-LIAAKDEAVAAQVIIQYGGSVKPENAEAYFSQPDIDGALVGGASLDAKSFAAIAKAA 251          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_VIBFM (Triosephosphate isomerase OS=Vibrio fischeri (strain MJ11) GN=tpiA PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.990e-35
Identity = 85/190 (44.74%), Postives = 113/190 (59.47%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 662
            + AQN  +   GAFTG++S  ML       +I+GHSERR   NES+EFV  K A+    GL  + C+GE+  Q EAG T+ V A Q  A+ +   V + +  ++AYEP+WAIGTGK AT   AQ +H ++R  + A  S E+A    I YGGSV   N     AQPD+DG LVGGA+L  + F  I K+A
Sbjct:   63 LGAQNTDLNNSGAFTGDMSPAMLKEFGATHIIIGHSERREYHNESDEFVAKKFAFLKENGLTPVLCIGESEAQNEAGETVAVCARQIDAVINTQGVDALNGAIIAYEPIWAIGTGKAATAEDAQRIHAQIRAHI-AEKSEEVAKNVVIQYGGSVKPENAAAYFAQPDIDGALVGGAALDAKSFAAIAKAA 251          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_VIBF1 (Triosephosphate isomerase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=tpiA PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.990e-35
Identity = 85/190 (44.74%), Postives = 113/190 (59.47%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 662
            + AQN  +   GAFTG++S  ML       +I+GHSERR   NES+EFV  K A+    GL  + C+GE+  Q EAG T+ V A Q  A+ +   V + +  ++AYEP+WAIGTGK AT   AQ +H ++R  + A  S E+A    I YGGSV   N     AQPD+DG LVGGA+L  + F  I K+A
Sbjct:   63 LGAQNTDLNNSGAFTGDMSPAMLKEFGATHIIIGHSERREYHNESDEFVAKKFAFLKENGLTPVLCIGESEAQNEAGETVAVCARQIDAVINTQGVDALNGAIIAYEPIWAIGTGKAATAEDAQRIHAQIRAHI-AEKSEEVAKNVVIQYGGSVKPENAAAYFAQPDIDGALVGGAALDAKSFAAIAKAA 251          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_STRP8 (Triosephosphate isomerase OS=Streptococcus pyogenes serotype M18 GN=tpiA PE=3 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.990e-35
Identity = 82/181 (45.30%), Postives = 112/181 (61.88%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSW--SNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 638
            VAAQNC+ +  GAFTGE S ++L  +   +V++GHSERR   +E++E +  K     + GL  I C GE+LE  EAG   + V AQ  A    +S+   +++VLAYEP+WAIGTGK AT   AQ +   +R  + A+   E+A   R+ YGGSV   N K+  A PDVDG LVGGASL+ +
Sbjct:   62 VAAQNCYFENTGAFTGETSPKVLAEMGADYVVIGHSERRDYFHETDEDINKKAKAIFANGLTPIICCGESLETYEAGKAAEFVGAQVSAALAGLSAEQVASLVLAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQEVADKVRVQYGGSVKPENVKDYMACPDVDGALVGGASLEAD 242          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_PARUW (Triosephosphate isomerase OS=Protochlamydia amoebophila (strain UWE25) GN=tpiA PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.990e-35
Identity = 82/187 (43.85%), Postives = 113/187 (60.43%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDII 653
            + AQN      GAFTGEI+ +M+      +V+LGHSERR +  E N F+  KV  AL  GL  + CVGET E+R++G T  ++  Q +     +++     +++AYEPVWAIG G+ A P  AQE+H   RK +    S E+A    I YGGSVN +N   L  QPD+DG L+GGASL  E F++I+
Sbjct:   64 IGAQNMNDASEGAFTGEIAGKMVKEAGASFVLLGHSERRHLYKEDNAFINRKVKKALEIGLTPVLCVGETFEERKSGETQQIIRTQIQECLAGLTAEDLKTLIIAYEPVWAIGNGQNAKPEGAQEIHQFCRKIIKEIFSEELAEQIVIQYGGSVNPSNAISLLKQPDIDGLLIGGASLSLETFVEIV 250          
The following BLAST results are available for this feature:
BLAST of CX295728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_ACIBS1.753e-3545.00Triosephosphate isomerase OS=Acinetobacter baumann... [more]
TPIS_ACIBC1.753e-3545.00Triosephosphate isomerase OS=Acinetobacter baumann... [more]
TPIS_DICTD2.290e-3546.03Triosephosphate isomerase OS=Dictyoglomus turgidum... [more]
TPIS_CUPTR2.290e-3548.04Triosephosphate isomerase OS=Cupriavidus taiwanens... [more]
TPIS_CLOAB2.290e-3545.26Triosephosphate isomerase OS=Clostridium acetobuty... [more]
TPIS_VIBPA2.990e-3544.74Triosephosphate isomerase OS=Vibrio parahaemolytic... [more]
TPIS_VIBFM2.990e-3544.74Triosephosphate isomerase OS=Vibrio fischeri (stra... [more]
TPIS_VIBF12.990e-3544.74Triosephosphate isomerase OS=Vibrio fischeri (stra... [more]
TPIS_STRP82.990e-3545.30Triosephosphate isomerase OS=Streptococcus pyogene... [more]
TPIS_PARUW2.990e-3543.85Triosephosphate isomerase OS=Protochlamydia amoebo... [more]

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Properties
Property NameValue
Genbank descriptionC05075C06SK DroRLeaf1 Citrus clementina cDNA clone C05075C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295728 ID=CX295728; Name=CX295728; organism=Citrus clementina; type=EST; length=720bp
CTGAAGGTCAAGTTCCATCTTCTGATGTCGTTGAGGTCGTTGTTAGCCCT
CCGTTTGTGTTTCTTGGACTGGTGAAGAGTTCGTTGAGGCCTGATTTTCA
TGTTGCGGCACAGAATTGCTGGGTCAAGAAGGGAGGTGCTTTCACCGGTG
AGATTAGTGCGGAAATGCTCGTCAATTTGGATATTCCTTGGGTCATTCTT
GGTCATTCTGAAAGGAGACTCATTTTGAATGAATCAAATGAGTTTGTTGG
GGATAAGGTTGCATATGCACTTTCTCAAGGTTTGAAGGTGATTGCTTGTG
TTGGTGAGACACTTGAGCAGCGTGAAGCAGGATCTACTATGGATGTTGTT
GCTGCACAAACTAAAGCAATCGCAGATCGAGTCTCAAGCTGGTCAAACAT
TGTTTTGGCCTATGAACCTGTGTGGGCTATTGGAACTGGGAAGGTTGCCA
CTCCAGTGCAGGCTCAAGAAGTACATTTTGAACTGAGGAAATGGCTTTTT
GCAAACACCAGTCCTGAAATTGCTGCAGCAACACGGATCATCTACGGAGG
ATCCGTAAATGGTGCAAACTGCAAGGAATTGGCTGCACAGCCTGATGTTG
ACGGATTTTTGGTTGGTGGTGCTTCGTTGAAGCCGGAGTTCATTGACATC
ATCAAATCTGCTGAGCTGAAGTAAATTCTTGAGCTTTATTTCAGGGCAGT
TTGCTGATGAGTATTACTGT
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