CX295728

Overview
NameCX295728
Unique NameCX295728
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_STRCO (Triosephosphate isomerase OS=Streptomyces coelicolor GN=tpiA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.484e-34
Identity = 88/186 (47.31%), Postives = 113/186 (60.75%), Query Frame = 3
Query:  108 AQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKA-IADRVSSWS-NIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDIIK 656
            AQ+     GGA+TGEIS  ML  L   +V +GHSERR    E++E V  KV  A   GL  I CVGE L+ REAG+ ++   AQ +  + D  +  + ++V+AYEPVWAIGTGKV     AQEV   +R  L    S E+A   RI YGGSV   N  E+ A+PD+DG LVGGASL   EF+ I++
Sbjct:   69 AQDISAHDGGAYTGEISGPMLAKLKCTYVAVGHSERRQYHAETDEIVNAKVKAAYKHGLTPILCVGEELDVREAGNHVEHTLAQVEGGLKDLAAEQAESVVIAYEPVWAIGTGKVCGADDAQEVCAAIRGKLAELYSQELADKVRIQYGGSVKSGNVAEIMAKPDIDGALVGGASLDSDEFVKIVR 254          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_RUBXD (Triosephosphate isomerase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=tpiA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.484e-34
Identity = 80/188 (42.55%), Postives = 117/188 (62.23%), Query Frame = 3
Query:  108 AQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 662
            AQN + +  GA+TGE+SA ML+++     I+GHSERR +  E++E V  K   A+  GL  + CVGET E+R+AG   + V+ Q +A+ + +  +S   +V AYEP+WAIGTGK A+P  AQ+    +R  L        A   R++YGGS+   N  E+ AQ DVDG LVGGASL+   F+ ++++A
Sbjct:   67 AQNFFYEDSGAYTGEVSAPMLLDVGARASIVGHSERRELFCETDESVARKARRAVEAGLLPVVCVGETEEERDAGRMWEKVSGQVRAVVEGLGDASGGRVVFAYEPIWAIGTGKTASPEDAQDAIGRIRGLLRELRGEGFAEEARLLYGGSIKPENISEIMAQKDVDGGLVGGASLEVGSFLQLVEAA 254          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_FRATT (Triosephosphate isomerase OS=Francisella tularensis subsp. tularensis GN=tpiA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.484e-34
Identity = 84/200 (42.00%), Postives = 119/200 (59.50%), Query Frame = 3
Query:   72 VKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 662
            V S L     V  QN      GA+TGEISA ML ++   ++++GHSERR +  ES+E V  K+   +   +  + C+GE+L+ R++G    V+A Q   I + +S    + +V+AYEPVWAIGTG VA+  Q QE H  +R  L A     +A   +I+YGGS+   N K++ + PDVDG L+GGASLK  EF +II  A
Sbjct:   49 VISQLPEKVGVGLQNITFYDDGAYTGEISARMLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIGESLDDRQSGKLKQVLATQLSLILENLSVEQLAKVVIAYEPVWAIGTGVVASLEQIQETHQFIRS-LLAKVDERLAKNIKIVYGGSLKAENAKDILSLPDVDGGLIGGASLKAAEFNEIINQA 247          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_FRAT1 (Triosephosphate isomerase OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=tpiA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.484e-34
Identity = 84/200 (42.00%), Postives = 119/200 (59.50%), Query Frame = 3
Query:   72 VKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 662
            V S L     V  QN      GA+TGEISA ML ++   ++++GHSERR +  ES+E V  K+   +   +  + C+GE+L+ R++G    V+A Q   I + +S    + +V+AYEPVWAIGTG VA+  Q QE H  +R  L A     +A   +I+YGGS+   N K++ + PDVDG L+GGASLK  EF +II  A
Sbjct:   49 VISQLPEKVGVGLQNITFYDDGAYTGEISARMLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIGESLDDRQSGKLKQVLATQLSLILENLSVEQLAKVVIAYEPVWAIGTGVVASLEQIQETHQFIRS-LLAKVDERLAKNIKIVYGGSLKAENAKDILSLPDVDGGLIGGASLKAAEFNEIINQA 247          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_CLONN (Triosephosphate isomerase OS=Clostridium novyi (strain NT) GN=tpiA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.484e-34
Identity = 85/190 (44.74%), Postives = 114/190 (60.00%), Query Frame = 3
Query:   69 LVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSW--SNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 632
            +VK++   +  V AQN   ++ GAFTGE +  ML  L + +VILGHSERR    E++  +  K+  A    L  I C+GETLE+REA  T +V+A Q K     ++    +  V+AYEP+WAIGTGK AT  QA+E    +RK +      E A   RI YGGSV  A  KE  A+P++DG L+GGASLK
Sbjct:   49 VVKATEGTNIKVGAQNMHFEESGAFTGETAPAMLEELGVKYVILGHSERRQYFGENDADLNKKMKKAFEHNLTPILCIGETLEEREADVTEEVLAKQIKLDLAGLTEAQIAETVIAYEPIWAIGTGKTATSDQAEETIAFVRKTVAGMFGAEAAEKMRIQYGGSVKPATIKEQMAKPNIDGGLIGGASLK 238          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_BRAJA (Triosephosphate isomerase OS=Bradyrhizobium japonicum GN=tpiA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.484e-34
Identity = 83/186 (44.62%), Postives = 113/186 (60.75%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIK 656
            V AQ+C  K  GA TG+I+AEML N     +I+GHSERR    E +  V  K   A   G+  I C+GET  QR+AG T+D++  Q        S+ +N+V+AYEPVWAIGTG   T    +++H  +R++L +  S +  A  RI+YGGSV  +N  EL A  +V+G LVGGASLK  +F+ I K
Sbjct:   64 VGAQDCHPKASGAHTGDIAAEMLANAGATAIIVGHSERRADHGEGDALVRQKAEAAWRAGVTAIVCIGETQAQRDAGQTLDILRGQLDGSLPDGSTAANLVVAYEPVWAIGTGLTPTVQDVEQIHGFIREFLTSRFSVD-GAKMRILYGGSVKPSNAAELMAVKNVNGALVGGASLKAADFLAIAK 248          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_FRATO (Triosephosphate isomerase OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.938e-34
Identity = 84/200 (42.00%), Postives = 119/200 (59.50%), Query Frame = 3
Query:   72 VKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 662
            V S L     V  QN      GA+TGEISA ML ++   ++++GHSERR +  ES+E V  K+   +   +  + C+GE+L+ R++G    V+A Q   I + +S    + +V+AYEPVWAIGTG VA+  Q QE H  +R  L A     +A   +I+YGGS+   N K++ + PDVDG L+GGASLK  EF +II  A
Sbjct:   49 VISQLPEKVGVGLQNITFYDDGAYTGEISARMLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIGESLDDRKSGKLKQVLATQLSLILENLSVEQLAKVVIAYEPVWAIGTGVVASLEQIQETHQFIRS-LLAKVDERLAKNIKIVYGGSLKAENAKDILSLPDVDGGLIGGASLKAAEFNEIINQA 247          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_FRATN (Triosephosphate isomerase OS=Francisella tularensis subsp. novicida (strain U112) GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.938e-34
Identity = 84/200 (42.00%), Postives = 119/200 (59.50%), Query Frame = 3
Query:   72 VKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 662
            V S L     V  QN      GA+TGEISA ML ++   ++++GHSERR +  ES+E V  K+   +   +  + C+GE+L+ R++G    V+A Q   I + +S    + +V+AYEPVWAIGTG VA+  Q QE H  +R  L A     +A   +I+YGGS+   N K++ + PDVDG L+GGASLK  EF +II  A
Sbjct:   49 VISQLPEKVGVGLQNITFYDDGAYTGEISARMLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIGESLDDRQSGKLKQVLATQLSLILENLSVEQLAKVVIAYEPVWAIGTGVVASLDQIQETHQFIRS-LLAKVDERLAKNIKIVYGGSLKAENAKDILSLPDVDGGLIGGASLKAAEFNEIINQA 247          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_FRATH (Triosephosphate isomerase OS=Francisella tularensis subsp. holarctica (strain LVS) GN=tpiA PE=3 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.938e-34
Identity = 84/200 (42.00%), Postives = 119/200 (59.50%), Query Frame = 3
Query:   72 VKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 662
            V S L     V  QN      GA+TGEISA ML ++   ++++GHSERR +  ES+E V  K+   +   +  + C+GE+L+ R++G    V+A Q   I + +S    + +V+AYEPVWAIGTG VA+  Q QE H  +R  L A     +A   +I+YGGS+   N K++ + PDVDG L+GGASLK  EF +II  A
Sbjct:   49 VISQLPEKVGVGLQNITFYDDGAYTGEISARMLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIGESLDDRKSGKLKQVLATQLSLILENLSVEQLAKVVIAYEPVWAIGTGVVASLEQIQETHQFIRS-LLAKVDERLAKNIKIVYGGSLKAENAKDILSLPDVDGGLIGGASLKAAEFNEIINQA 247          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_FRATF (Triosephosphate isomerase OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=tpiA PE=3 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.938e-34
Identity = 84/200 (42.00%), Postives = 119/200 (59.50%), Query Frame = 3
Query:   72 VKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 662
            V S L     V  QN      GA+TGEISA ML ++   ++++GHSERR +  ES+E V  K+   +   +  + C+GE+L+ R++G    V+A Q   I + +S    + +V+AYEPVWAIGTG VA+  Q QE H  +R  L A     +A   +I+YGGS+   N K++ + PDVDG L+GGASLK  EF +II  A
Sbjct:   49 VISQLPEKVGVGLQNITFYDDGAYTGEISARMLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIGESLDDRKSGKLKQVLATQLSLILENLSVEQLAKVVIAYEPVWAIGTGVVASLEQIQETHQFIRS-LLAKVDERLAKNIKIVYGGSLKAENAKDILSLPDVDGGLIGGASLKAAEFNEIINQA 247          
The following BLAST results are available for this feature:
BLAST of CX295728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_STRCO1.484e-3447.31Triosephosphate isomerase OS=Streptomyces coelicol... [more]
TPIS_RUBXD1.484e-3442.55Triosephosphate isomerase OS=Rubrobacter xylanophi... [more]
TPIS_FRATT1.484e-3442.00Triosephosphate isomerase OS=Francisella tularensi... [more]
TPIS_FRAT11.484e-3442.00Triosephosphate isomerase OS=Francisella tularensi... [more]
TPIS_CLONN1.484e-3444.74Triosephosphate isomerase OS=Clostridium novyi (st... [more]
TPIS_BRAJA1.484e-3444.62Triosephosphate isomerase OS=Bradyrhizobium japoni... [more]
TPIS_FRATO1.938e-3442.00Triosephosphate isomerase OS=Francisella tularensi... [more]
TPIS_FRATN1.938e-3442.00Triosephosphate isomerase OS=Francisella tularensi... [more]
TPIS_FRATH1.938e-3442.00Triosephosphate isomerase OS=Francisella tularensi... [more]
TPIS_FRATF1.938e-3442.00Triosephosphate isomerase OS=Francisella tularensi... [more]

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Properties
Property NameValue
Genbank descriptionC05075C06SK DroRLeaf1 Citrus clementina cDNA clone C05075C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295728 ID=CX295728; Name=CX295728; organism=Citrus clementina; type=EST; length=720bp
CTGAAGGTCAAGTTCCATCTTCTGATGTCGTTGAGGTCGTTGTTAGCCCT
CCGTTTGTGTTTCTTGGACTGGTGAAGAGTTCGTTGAGGCCTGATTTTCA
TGTTGCGGCACAGAATTGCTGGGTCAAGAAGGGAGGTGCTTTCACCGGTG
AGATTAGTGCGGAAATGCTCGTCAATTTGGATATTCCTTGGGTCATTCTT
GGTCATTCTGAAAGGAGACTCATTTTGAATGAATCAAATGAGTTTGTTGG
GGATAAGGTTGCATATGCACTTTCTCAAGGTTTGAAGGTGATTGCTTGTG
TTGGTGAGACACTTGAGCAGCGTGAAGCAGGATCTACTATGGATGTTGTT
GCTGCACAAACTAAAGCAATCGCAGATCGAGTCTCAAGCTGGTCAAACAT
TGTTTTGGCCTATGAACCTGTGTGGGCTATTGGAACTGGGAAGGTTGCCA
CTCCAGTGCAGGCTCAAGAAGTACATTTTGAACTGAGGAAATGGCTTTTT
GCAAACACCAGTCCTGAAATTGCTGCAGCAACACGGATCATCTACGGAGG
ATCCGTAAATGGTGCAAACTGCAAGGAATTGGCTGCACAGCCTGATGTTG
ACGGATTTTTGGTTGGTGGTGCTTCGTTGAAGCCGGAGTTCATTGACATC
ATCAAATCTGCTGAGCTGAAGTAAATTCTTGAGCTTTATTTCAGGGCAGT
TTGCTGATGAGTATTACTGT
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