CX295728

Overview
NameCX295728
Unique NameCX295728
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_CLOK5 (Triosephosphate isomerase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.938e-34
Identity = 86/192 (44.79%), Postives = 111/192 (57.81%), Query Frame = 3
Query:   69 LVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTK-AIAD-RVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 638
            +VKS    +  V AQN   ++ GA+TGEIS  ML +L + +VI+GHSERR   NE +E +  K+  A    +  I C GE+L +RE G T +V+  Q K A+ D R      IV+AYEP+WAIGTGK AT  QA +    +R  +        A   RI YGGSV  A  K    QP +DG LVGGASLKP+
Sbjct:   49 VVKSVGGTNIKVGAQNMHYEESGAYTGEISPGMLKSLKVDYVIIGHSERRQYFNEKDETINKKIKKAFEHDIIPIVCCGESLLERENGITEEVLGRQIKLALKDLRKEQVEKIVIAYEPIWAIGTGKTATDKQANDTIAHIRGVVSKMYGENAAEVVRIQYGGSVKPATIKAQMEQPHIDGALVGGASLKPQ 240          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_ANOFW (Triosephosphate isomerase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.938e-34
Identity = 84/202 (41.58%), Postives = 121/202 (59.90%), Query Frame = 3
Query:   69 LVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 665
            LV+++   +  + AQN   +  GAFTGEIS   L +L + +VI+GHSERR +  E++E V  KV  A   GL  I C GETLE+RE+  T +VV  Q +   + ++      +V+AYEP+WAIGTGK +T   A  V   +R+ +    S E A A RI YGGSV   N     A+  +DG LVGGASL+P+ F+ ++++ +
Sbjct:   50 LVEATKGTNVKIGAQNMHFEDQGAFTGEISPVALKDLGVEYVIIGHSERREMFAETDETVNKKVLAAFKHGLVPIVCCGETLEERESNRTNEVVRVQVEKALEGLTEEQVKQVVIAYEPIWAIGTGKSSTAEDANNVCGYIRQVIANKFSQEAANAVRIQYGGSVKPENIAAFLAEEHIDGALVGGASLQPQSFLQLVEAGK 251          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_XANP2 (Triosephosphate isomerase OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.532e-34
Identity = 88/187 (47.06%), Postives = 109/187 (58.29%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKS 659
            +  QNC     GA TG ISAEML +  +  VI+GHSERR  L+ES+  V  KV  A   GL  I CVGET E+R+AG  + VV  Q         + SN+V+AYEPVWAIGTG+  TP     +H  +R  L +    E A   RI+YGGSV   N   L A  DVDG LVGGASLK  +F+ I ++
Sbjct:   65 LGGQNCHPAPAGAHTGGISAEMLKDAGVTSVIVGHSERRTNLSESDAVVMAKVKAAWCFGLLPIVCVGETAEERDAGEAVGVVTRQVHQSLPEGCTASNLVIAYEPVWAIGTGRTPTPEDVANIHGTIRSVLRSQFGAE-ADGIRILYGGSVKPDNAATLMAVADVDGALVGGASLKAADFLAIARA 250          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_RHOSR (Triosephosphate isomerase OS=Rhodococcus sp. (strain RHA1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.532e-34
Identity = 81/179 (45.25%), Postives = 107/179 (59.78%), Query Frame = 3
Query:  108 AQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSW--SNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 638
            AQ+      GA+TGEIS  ML  L   +V++GHSERR +  E N+ V  K   AL  G+  I C+GE L+ REAG  +     Q +     +S    + +V+AYEPVWAIGTG+VA+   AQEV   +R  L    S ++A+  R++YGGSVN  N  E+  Q DVDG LVGGASLK +
Sbjct:   68 AQDVSAHDSGAYTGEISGSMLAKLGCTFVVVGHSERRTLHCEDNDTVLAKTKAALKNGITPIVCIGEGLDVREAGEHVSYNVEQLRGSLAGLSGEDIAKVVIAYEPVWAIGTGRVASAANAQEVCAAIRATLGELASQDVASGVRVLYGGSVNAKNVGEIVGQTDVDGALVGGASLKAD 246          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_CLOB8 (Triosephosphate isomerase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.532e-34
Identity = 86/180 (47.78%), Postives = 107/180 (59.44%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKA-IADRVSSW-SNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP 635
            VAAQN   ++ GAFTGE++  ML  + I +V+LGHSERR   NE++E +  KV  A    +  I C GE+LEQRE G+T  V+ AQ KA IA   +     +V+AYEP+WAIGTGK AT  QA E    +R  +      E A  TRI YGGSV     K      D+DG LVGGASL P
Sbjct:   60 VAAQNMHFEESGAFTGEVAPGMLEAMGIDYVVLGHSERREYFNETDEALNKKVKKAFEHNITPILCCGESLEQRENGTTNKVIEAQIKADIAGLTNEQVEKLVIAYEPIWAIGTGKTATDEQANETIKAIRAMVAEMYGSESAEKTRIQYGGSVKPNTIKAQMEMSDIDGALVGGASLVP 239          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_BRASB (Triosephosphate isomerase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.532e-34
Identity = 83/186 (44.62%), Postives = 111/186 (59.68%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIK 656
            V AQ+C  K  GA TG++SAEML +     +I+GHSERR    ES+  V  K       GL  I CVGET +QR+AG T+D++  Q      + S+ +N+ +AYEPVWAIGTG   T    +++H  +R  L    + E  A  RI+YGGSV  +N  EL A  +V+G LVGGASLK  +F+ I K
Sbjct:   65 VGAQDCHAKASGAHTGDLSAEMLADAGASAIIVGHSERRADHGESDVVVHQKTEAVWRAGLVAIVCVGETQQQRDAGQTLDILRGQLNLSLPQGSTAANLTVAYEPVWAIGTGLTPTAKDVEQIHAFIRTLLIERFNGE-GARMRILYGGSVKPSNAAELMAVANVNGALVGGASLKAADFLAIAK 249          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_BORDL (Triosephosphate isomerase OS=Borrelia duttonii (strain Ly) GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.532e-34
Identity = 89/188 (47.34%), Postives = 113/188 (60.11%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLK-VIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDII 653
            + AQN   +  GA T EI+  ML+   + +VILGHSE R  L E++E +  KV   L    K +I CVGETLE+RE G T+DVV  Q +     V  S    I+LAYEPVWAIGTGK AT  +AQEVH  +R  + +  S   A    I YGGSVN  N + L  + D+DG L+GGASLK + F+ II
Sbjct:   62 LGAQNMSYENSGARTSEIAPSMLLEFGVDYVILGHSECRTYLGENDEIINKKVLTGLKHPFKYLILCVGETLEEREKGKTLDVVLNQVRNGLASVYESDLQRIILAYEPVWAIGTGKTATKEEAQEVHKAIRLEIQSLYSKSAADNIIIQYGGSVNVDNVEGLMGENDIDGALIGGASLKADSFLKII 249          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS1_RHILO (Triosephosphate isomerase 1 OS=Rhizobium loti GN=tpiA1 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.532e-34
Identity = 86/192 (44.79%), Postives = 112/192 (58.33%), Query Frame = 3
Query:   87 RPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKS 659
            R   H   ++C  K+ GA+TG ISAEML +     VI+GHSE R    E +  V  K A A   GL  I C+GET +QREAG+T++V++ Q        ++ SN V+AYEPVWAIGTG   T     E H  +R+ L        AA TRI+YGGSV  +N  EL    +VDG LVGGASLK  +F+ I ++
Sbjct:   60 RTPVHAGGEDCHTKESGAYTGCISAEMLKDAGASHVIVGHSECREQRGEDDATVQAKAAAAWRAGLVAIICIGETQQQREAGATLEVLSRQVAGSVPPSATPSNTVIAYEPVWAIGTGLTPTAADVAEAHAHIRERLSEKLGAS-AAKTRILYGGSVKPSNAVELLGVRNVDGALVGGASLKAADFLGIAEA 250          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_POLSQ (Triosephosphate isomerase OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.306e-34
Identity = 80/191 (41.88%), Postives = 115/191 (60.21%), Query Frame = 3
Query:   69 LVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQ-TKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 638
            L+K        + AQ+      GA+TGE+ A ML  +   +VI+GHSERR +  E++E V  K   AL  G+  + CVGET ++R +G   ++V +Q  K ++      ++ ++AYEPVWAIGTGKVA+   AQ++H  +R  L A    ++A+   I+YGGSV   N  EL A PD+DG LVGGASL P+
Sbjct:   55 LIKEHSLAFLSLGAQDVSAHGAGAYTGEVGASMLKEMGCEYVIVGHSERRQMHQEADESVAAKALQALDSGMTPVICVGETADERNSGRAEEIVCSQVAKQVSVLQDRLADCLIAYEPVWAIGTGKVASAQVAQDMHRAIRMQL-AEFDEDVASHVGILYGGSVKPDNAVELFAMPDIDGGLVGGASLNPQ 244          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_MYCVP (Triosephosphate isomerase OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.306e-34
Identity = 83/186 (44.62%), Postives = 108/186 (58.06%), Query Frame = 3
Query:  108 AQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWS--NIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 659
            AQ+      GA+TGEIS   L  L   + ++GHSERR   NE +  V  K A A   GL  I C+GE L+ REAG+ ++    Q +     +S+      V+AYEPVWAIGTG+VA+   AQEV   +R  L    SPE+AA  R++YGGSVN  N  E+  Q DVDG LVGGASL  E   ++ +
Sbjct:   68 AQDVSQHDSGAYTGEISGAFLAKLGCTFAVVGHSERRTYHNEDDALVAAKAAAAFKHGLTPIICIGEHLDVREAGNHVEYNVNQLRGSLAGLSAEQIGQAVIAYEPVWAIGTGRVASAADAQEVCKAIRDELGNLASPELAAGVRVLYGGSVNAKNVGEIVGQADVDGALVGGASLDGEQFSMLSA 253          
The following BLAST results are available for this feature:
BLAST of CX295728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_CLOK51.938e-3444.79Triosephosphate isomerase OS=Clostridium kluyveri ... [more]
TPIS_ANOFW1.938e-3441.58Triosephosphate isomerase OS=Anoxybacillus flavith... [more]
TPIS_XANP22.532e-3447.06Triosephosphate isomerase OS=Xanthobacter autotrop... [more]
TPIS_RHOSR2.532e-3445.25Triosephosphate isomerase OS=Rhodococcus sp. (stra... [more]
TPIS_CLOB82.532e-3447.78Triosephosphate isomerase OS=Clostridium beijerinc... [more]
TPIS_BRASB2.532e-3444.62Triosephosphate isomerase OS=Bradyrhizobium sp. (s... [more]
TPIS_BORDL2.532e-3447.34Triosephosphate isomerase OS=Borrelia duttonii (st... [more]
TPIS1_RHILO2.532e-3444.79Triosephosphate isomerase 1 OS=Rhizobium loti GN=t... [more]
TPIS_POLSQ3.306e-3441.88Triosephosphate isomerase OS=Polynucleobacter sp. ... [more]
TPIS_MYCVP3.306e-3444.62Triosephosphate isomerase OS=Mycobacterium vanbaal... [more]

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Properties
Property NameValue
Genbank descriptionC05075C06SK DroRLeaf1 Citrus clementina cDNA clone C05075C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295728 ID=CX295728; Name=CX295728; organism=Citrus clementina; type=EST; length=720bp
CTGAAGGTCAAGTTCCATCTTCTGATGTCGTTGAGGTCGTTGTTAGCCCT
CCGTTTGTGTTTCTTGGACTGGTGAAGAGTTCGTTGAGGCCTGATTTTCA
TGTTGCGGCACAGAATTGCTGGGTCAAGAAGGGAGGTGCTTTCACCGGTG
AGATTAGTGCGGAAATGCTCGTCAATTTGGATATTCCTTGGGTCATTCTT
GGTCATTCTGAAAGGAGACTCATTTTGAATGAATCAAATGAGTTTGTTGG
GGATAAGGTTGCATATGCACTTTCTCAAGGTTTGAAGGTGATTGCTTGTG
TTGGTGAGACACTTGAGCAGCGTGAAGCAGGATCTACTATGGATGTTGTT
GCTGCACAAACTAAAGCAATCGCAGATCGAGTCTCAAGCTGGTCAAACAT
TGTTTTGGCCTATGAACCTGTGTGGGCTATTGGAACTGGGAAGGTTGCCA
CTCCAGTGCAGGCTCAAGAAGTACATTTTGAACTGAGGAAATGGCTTTTT
GCAAACACCAGTCCTGAAATTGCTGCAGCAACACGGATCATCTACGGAGG
ATCCGTAAATGGTGCAAACTGCAAGGAATTGGCTGCACAGCCTGATGTTG
ACGGATTTTTGGTTGGTGGTGCTTCGTTGAAGCCGGAGTTCATTGACATC
ATCAAATCTGCTGAGCTGAAGTAAATTCTTGAGCTTTATTTCAGGGCAGT
TTGCTGATGAGTATTACTGT
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