CX295728

Overview
NameCX295728
Unique NameCX295728
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_HYPNA (Triosephosphate isomerase OS=Hyphomonas neptunium (strain ATCC 15444) GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.306e-34
Identity = 80/188 (42.55%), Postives = 113/188 (60.11%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 662
            +  + C   + GA TG+++AEML +    +VI+GHSERR    E++  V  + + AL  G+  I CVGETL+QR+AG  + V+  Q        +  + IV+AYEPVWAIGTG+VAT  Q  EVH  +R  L      +    TRI+YGGS+N  N  E+ A  +V+G L+GGASLK  +F+ I + A
Sbjct:   61 IGGETCHANEKGAHTGDLAAEMLKDAGASYVIVGHSERRADHGETDAVVAAQASAALRAGITPIICVGETLDQRDAGEVLTVITTQMAESIPEGAEAAAIVIAYEPVWAIGTGRVATSEQIAEVHTSIRN-LLVRRFGDAGRTTRILYGGSMNPGNAAEILAVAEVNGGLIGGASLKAADFLAIYRLA 247          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_BRASO (Triosephosphate isomerase OS=Bradyrhizobium sp. (strain ORS278) GN=tpiA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.306e-34
Identity = 85/186 (45.70%), Postives = 110/186 (59.14%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIK 656
            V AQ+C  K  GA TG+ISAEML +     VI+GHSERR    ES+  V  K   A   GL  I CVGET +QR+AG T++++  Q        S   N+++AYEPVWAIGTG   T    +++H  +R+ L      E  A  RI+YGGSV  +N  EL A  +V+G LVGGASLK  +F+ I K
Sbjct:   65 VGAQDCHAKASGAHTGDISAEMLADAGASAVIVGHSERRADHGESDVVVHQKAEAAWRAGLVAIVCVGETQQQRDAGLTLEILRGQLTLSLPEGSRADNLIVAYEPVWAIGTGLTPTAGDVEQIHSFIRQLLIVRFK-EQGARMRILYGGSVKPSNAAELMAVANVNGALVGGASLKAADFLAIAK 249          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_TREPS (Triosephosphate isomerase OS=Treponema pallidum subsp. pallidum (strain SS14) GN=tpiA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.318e-34
Identity = 85/189 (44.97%), Postives = 115/189 (60.85%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKA-IADRVSS-WSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKS 659
            + AQ+   ++ GA TGE+S   L +L +  VI+GHSERR    E+++ +  KV   L  GL+VI CVGE L++ EAG T +VV  Q +A +AD   S   N+ +AYEPVWAIGTGK ATP QA  VH  +R  +       IA A  I YGGS+   N + L A+  +DG L+GGASL+   F+ I +S
Sbjct:   60 LGAQDVSSEEWGAHTGEVSVLQLEDLGVQVVIVGHSERRHGRGENDKLINQKVRRVLESGLRVILCVGERLQEYEAGCTNEVVGTQVRAGMADVCGSLMHNVTVAYEPVWAIGTGKTATPAQANAVHAHIRSVVREMYGAAIAEALCIQYGGSMKAENARALLAEEHIDGGLIGGASLEAASFVPIARS 248          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_TREPA (Triosephosphate isomerase OS=Treponema pallidum GN=tpiA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.318e-34
Identity = 85/189 (44.97%), Postives = 115/189 (60.85%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKA-IADRVSS-WSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKS 659
            + AQ+   ++ GA TGE+S   L +L +  VI+GHSERR    E+++ +  KV   L  GL+VI CVGE L++ EAG T +VV  Q +A +AD   S   N+ +AYEPVWAIGTGK ATP QA  VH  +R  +       IA A  I YGGS+   N + L A+  +DG L+GGASL+   F+ I +S
Sbjct:   60 LGAQDVSSEEWGAHTGEVSVLQLEDLGVQVVIVGHSERRHGRGENDKLINQKVRRVLESGLRVILCVGERLQEYEAGCTNEVVGTQVRAGMADVCGSLMHNVTVAYEPVWAIGTGKTATPAQANAVHAHIRSVVREMYGAAIAEALCIQYGGSMKAENARALLAEEHIDGGLIGGASLEAASFVPIARS 248          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_SYNJA (Triosephosphate isomerase OS=Synechococcus sp. (strain JA-3-3Ab) GN=tpiA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.318e-34
Identity = 86/185 (46.49%), Postives = 109/185 (58.92%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDII 653
            V AQN   +  GAFTGEIS  ML  L + +VI+GHSERR    E++E V  ++A A   GL  I CVGE+L+QRE G T   +  Q       +    N+V+AYEP+WAIGTGK     +A  V   +R+ L A+  P       I+YGGSV  +N  EL AQP +DG LVGGASL P EF  I+
Sbjct:   66 VGAQNLHWEDQGAFTGEISGPMLAELGVRYVIVGHSERRQYFGETDETVNRRLAAAQRHGLTPILCVGESLQQREQGLTESWIVGQLDRALPGI-DLRNLVIAYEPIWAIGTGKTCAAAEANRVIGLIRQHLGADHLP-------ILYGGSVKASNIDELMAQPQIDGVLVGGASLDPQEFARIV 242          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_FRATM (Triosephosphate isomerase OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=tpiA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.318e-34
Identity = 83/200 (41.50%), Postives = 120/200 (60.00%), Query Frame = 3
Query:   72 VKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDIIKSA 662
            V S L     V  QN      GA+TGEISA ML ++   ++++GHSERR +  ES+E V  K+   +   +  + C+GE+L+ R++G    V+A Q   I + +S    + +V+AYEPVWAIGTG VA+  Q QE H  +R  L A    ++A   +I+YGGS+   N K++ + P+VDG L+GGASLK  EF +II  A
Sbjct:   49 VISQLPEKVGVGLQNITFYDDGAYTGEISARMLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIGESLDDRQSGKLKQVLATQLSLILENLSVEQLAKVVIAYEPVWAIGTGVVASLEQIQETHQFIRS-LLAKVDEKLAKNIKIVYGGSLKAENAKDILSLPNVDGGLIGGASLKAVEFNEIINQA 247          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_CLOTE (Triosephosphate isomerase OS=Clostridium tetani GN=tpiA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.318e-34
Identity = 81/179 (45.25%), Postives = 111/179 (62.01%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTK--AIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 632
            V AQN + ++ GAFTGE+S  ML  L+I +VI+GHSERR    E+++ V  K+  A    L  I CVGETL+++E G T +VV+ Q K      +      +V+AYEP+WAIGTGK AT  +A EV   +R  + +    ++A + RI YGGSV  +  KE  +  D+DG LVGGASLK
Sbjct:   66 VGAQNMYFEEKGAFTGEVSPLMLEKLNIDYVIIGHSERRQYFKETDQTVNKKLKAAFEHNLIPILCVGETLDEKENGVTEEVVSKQVKLGLFELKEEQVEKLVIAYEPIWAIGTGKTATSEEANEVIALIRSTVKSLYGDKVAESLRIQYGGSVKPSTIKEQMSMSDIDGALVGGASLK 244          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_CLOBM (Triosephosphate isomerase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=tpiA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.318e-34
Identity = 83/181 (45.86%), Postives = 107/181 (59.12%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 638
            V AQN   ++ GA+TGEIS +ML  L + +VI+GHSERR   NE++E V  KV  A    L  I C GE+LEQRE   T  V+  Q K     +S      +V+AYEP+WAIGTGK AT  QA E    +R  + +    ++A+  RI YGGSV     K   A+ ++DG LVGGASLK E
Sbjct:   60 VGAQNMHFEESGAYTGEISPKMLEELGVHYVIIGHSERRQYFNETDETVNKKVKKAFEHNLIPIVCCGESLEQREGNVTEKVLEGQIKVDLKELSKEQVEKLVIAYEPIWAIGTGKTATDEQANETIGYIRTVVKSMYGEDVASKVRIQYGGSVKPGTIKAQMAKEEIDGALVGGASLKAE 240          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_VIBCH (Triosephosphate isomerase OS=Vibrio cholerae GN=tpiA PE=3 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 5.640e-34
Identity = 85/190 (44.74%), Postives = 108/190 (56.84%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 662
            + AQN      GA+TG++S  ML +     +I+GHSERR    ES+EFV  K A+    GL  + C+GET  Q EAG T  V A Q  A+ D   V + +  ++AYEP+WAIGTGK AT   AQ +H  +R  L A     +A    I YGGSV   N     AQPD+DG LVGGASL  + F  I K+A
Sbjct:   63 LGAQNTDTHNSGAYTGDMSPAMLKDFGASHIIIGHSERRDYHKESDEFVAKKFAFLKENGLTPVFCIGETEAQNEAGETEAVCARQINAVIDAYGVEALNGAIIAYEPIWAIGTGKAATADDAQRIHASIRA-LIAAKDAAVAEQVIIQYGGSVKPENAASYFAQPDIDGALVGGASLDAKGFAAIAKAA 251          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_BORRA (Triosephosphate isomerase OS=Borrelia recurrentis (strain A1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.640e-34
Identity = 88/188 (46.81%), Postives = 113/188 (60.11%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLK-VIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDII 653
            + AQN   +  GA T EI+  ML+   + +VILGHSE R  L E++E +  KV   L    K +I CVGETLE+RE G T+DVV  Q +     V  S    I+LAYEPVWAIGTGK AT  +AQEVH  +R  + +  S   A    I YGGSVN  N + L  + D+DG L+GG+SLK + F+ II
Sbjct:   62 LGAQNMSYENSGARTSEIAPSMLLEFGVDYVILGHSECRTYLGENDEIINKKVLTGLKHPFKYLILCVGETLEEREKGKTLDVVLNQVRNGLASVYESDLQRIILAYEPVWAIGTGKTATKEEAQEVHKAIRLEIQSLYSKSAADNIIIQYGGSVNVDNVEGLMGENDIDGALIGGSSLKADSFLKII 249          
The following BLAST results are available for this feature:
BLAST of CX295728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_HYPNA3.306e-3442.55Triosephosphate isomerase OS=Hyphomonas neptunium ... [more]
TPIS_BRASO3.306e-3445.70Triosephosphate isomerase OS=Bradyrhizobium sp. (s... [more]
TPIS_TREPS4.318e-3444.97Triosephosphate isomerase OS=Treponema pallidum su... [more]
TPIS_TREPA4.318e-3444.97Triosephosphate isomerase OS=Treponema pallidum GN... [more]
TPIS_SYNJA4.318e-3446.49Triosephosphate isomerase OS=Synechococcus sp. (st... [more]
TPIS_FRATM4.318e-3441.50Triosephosphate isomerase OS=Francisella tularensi... [more]
TPIS_CLOTE4.318e-3445.25Triosephosphate isomerase OS=Clostridium tetani GN... [more]
TPIS_CLOBM4.318e-3445.86Triosephosphate isomerase OS=Clostridium botulinum... [more]
TPIS_VIBCH5.640e-3444.74Triosephosphate isomerase OS=Vibrio cholerae GN=tp... [more]
TPIS_BORRA5.640e-3446.81Triosephosphate isomerase OS=Borrelia recurrentis ... [more]

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Properties
Property NameValue
Genbank descriptionC05075C06SK DroRLeaf1 Citrus clementina cDNA clone C05075C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295728 ID=CX295728; Name=CX295728; organism=Citrus clementina; type=EST; length=720bp
CTGAAGGTCAAGTTCCATCTTCTGATGTCGTTGAGGTCGTTGTTAGCCCT
CCGTTTGTGTTTCTTGGACTGGTGAAGAGTTCGTTGAGGCCTGATTTTCA
TGTTGCGGCACAGAATTGCTGGGTCAAGAAGGGAGGTGCTTTCACCGGTG
AGATTAGTGCGGAAATGCTCGTCAATTTGGATATTCCTTGGGTCATTCTT
GGTCATTCTGAAAGGAGACTCATTTTGAATGAATCAAATGAGTTTGTTGG
GGATAAGGTTGCATATGCACTTTCTCAAGGTTTGAAGGTGATTGCTTGTG
TTGGTGAGACACTTGAGCAGCGTGAAGCAGGATCTACTATGGATGTTGTT
GCTGCACAAACTAAAGCAATCGCAGATCGAGTCTCAAGCTGGTCAAACAT
TGTTTTGGCCTATGAACCTGTGTGGGCTATTGGAACTGGGAAGGTTGCCA
CTCCAGTGCAGGCTCAAGAAGTACATTTTGAACTGAGGAAATGGCTTTTT
GCAAACACCAGTCCTGAAATTGCTGCAGCAACACGGATCATCTACGGAGG
ATCCGTAAATGGTGCAAACTGCAAGGAATTGGCTGCACAGCCTGATGTTG
ACGGATTTTTGGTTGGTGGTGCTTCGTTGAAGCCGGAGTTCATTGACATC
ATCAAATCTGCTGAGCTGAAGTAAATTCTTGAGCTTTATTTCAGGGCAGT
TTGCTGATGAGTATTACTGT
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